AMCG00018327 (LOC107674142,LOC107732858)


Basic Information

Item Value
gene id AMCG00018327
gene name LOC107674142,LOC107732858
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 8399833 ~ 8404453 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018327
CAGACACACGCTGGACAAAGTCTAGAGATAACTCAGAAAGCCTCATCCTGTTTGAAGGGGGTTTTGTCATATGCCTGTGTCAGCCTGTAgcctaaacaacaacaacaaaaaagctacCTTTCTCTTTTTGTTCAACTCCCTTCCTCCCTACATCCCCTCTTCAGTCTTTCCACACTGACCAATGTGAGctccagAGATCGCACTCCACGCTTTGGCCAAGAGGGACAAACCTATCACGGGTGCTGGCTGCAGAGGAGCAAGGGGAAGGCAGTAGGAGAGACTTACACACGTTgcacacactccctcacacacacactccctctcggCAGCCCTGCAACCTAGCTCTCCTCACACCCTCCCACACGCTGCCTCAACACAATGCTCTGCTGGGACCTGTGTGCAGCCCTGATCTTCACTACGATCCTGGTCAGGGCTTTCCCTTCAACCAACATCAAGATCACGCAAGctCTGCCCCTGCAGCTGTCTGACCCAAGCCAGCCCGTCTCCTGCCCGCTTTTCTGGACAGAGTTCGAAGGCCACTGCTACCGCTTCTTCCCACTCAATCGCACCTGGGCGGAGGCCGACCTGTACTGCGCTGAGTTCTCCAACGGGCACAAGTCAGCCAAACTCACCTCCATACACAGACAGGAGGGCACCCTGGAATGGACCGACGGCTCTTCCTATCAGTACAACTACTGGGATGGAAATCAGCCCGACGATGGAATCCACCGAATCCCAGTGGAGGAGGACTGTGTGGAGATCTGGTACAGGCAGAACAGTGCGTTGAGATCCTGGAACGACAACAGCTGTGACAAGGCCTTTCCCTTCGTCTGCAAAATCCCCACGCTGGAGAATTAACCCACGGACACTCCCTCCTGACGCAACTCGTCACCTGGCCTGCTGTGAGCACACGGACCGAGCATTGTACAGCCCTCCGGTGTGTCCTCTCTGTGACCGGGATACAGACAGTCCCAGCCCTGCTGTCCTCCAGCACCATATGACTCAAGAGACGGCTTCCACCTGTCTCGGCCAGGTCCCTAGATCCTCCGTTTTCATTCGGACCTCACTGTAAAGGAGACACATCACTGTTATTGTTACTACGTTATTGTTAAAGTTTTAGTCTCCTAGTTGTTATGCTGATAGGAAAGATTTATGATGTTTTTCTAAGAAAAGCATGCACGCTTCCTCCCTCACTCCCATTCCCTCTGCGGGCTGCAGGCGTACATCTGCAGTCGTGTTACAAGAACTTGGACTGATGCTGGAACTTCGCAAAGCCACAGGTTTTCTGCCTCTTGGGAACTTGCCTTAGAAATGGCAGTGACATCAGATCATCCCAACAGCTGAACCTACTGCTTGTTTGTCTCTTCCCTCATAGTGCGGTGCTTGTTGTGTTAGCACAGAATGGAGGAACTGGAACTTTTTTTCAATTgtgaaatacagttttaaatctA

Function

NR:

description
PREDICTED: C-type lectin domain family 19 member A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018327 True 1451 mRNA 0.52 6 8399833 8404453

Neighbor

gene id symbol gene type direction distance location
AMCG00018324 NA coding upstream 48462 8350111 ~ 8351371 (+)
AMCG00018325 xylt1,LOC107567884,LOC107729195,LOC107690267,LOC107733871,LOC107590574,LOC107686990,LOC106588898 coding upstream 84292 8290001 ~ 8315541 (+)
AMCG00018320 LOC104942092 coding upstream 232083 8154810 ~ 8167750 (+)
AMCG00018321 NA coding upstream 249283 8140007 ~ 8150550 (+)
AMCG00018318 NA coding upstream 281401 8116069 ~ 8118432 (+)
AMCG00018332 LOC106588920,LOC100691027,LOC101464353,LOC102776973,LOC102312408 coding downstream 82113 8486566 ~ 8514892 (+)
AMCG00018333 cp063,fopnl,LOC106564614 coding downstream 137538 8541991 ~ 8543115 (+)
AMCG00018336 myh11,LOC103025732 coding downstream 149135 8553588 ~ 8592721 (+)
AMCG00018335 NA coding downstream 200268 8604721 ~ 8623654 (+)
AMCG00018337 NA coding downstream 239402 8643855 ~ 8646108 (+)
G115678 NA non-coding upstream 27006 8352077 ~ 8372827 (+)
G115679 NA non-coding upstream 51997 8294416 ~ 8347836 (+)
G115640 NA non-coding upstream 305384 8094200 ~ 8094449 (+)
G115591 NA non-coding upstream 501653 7897940 ~ 7898180 (+)
G115585 NA non-coding upstream 508932 7883205 ~ 7890901 (+)
G115796 NA non-coding downstream 298704 8703157 ~ 8704903 (+)
G115873 NA non-coding downstream 457628 8862081 ~ 8862511 (+)
G115875 NA non-coding downstream 464089 8868542 ~ 8870342 (+)
G115896 NA non-coding downstream 631877 9036330 ~ 9036583 (+)
G115931 NA non-coding downstream 794424 9198877 ~ 9199440 (+)
G115648 NA other upstream 277662 8119778 ~ 8122171 (+)
G115590 fbxl16,LOC107685932,LOC107568165,LOC107738613,LOC107568127,LOC107690242 other upstream 505384 7893627 ~ 7894449 (+)
AMCG00018280 NA other upstream 1652395 6710482 ~ 6747438 (+)
AMCG00018272 NA other upstream 2239217 6155488 ~ 6160616 (+)
G115299 NA other upstream 2448816 5949463 ~ 5951017 (+)
G115789 NA other downstream 288911 8693364 ~ 8694719 (+)
AMCG00018358 polr3k,rpc11 other downstream 795204 9199657 ~ 9206776 (+)
AMCG00018360 f100a other downstream 835358 9239811 ~ 9245234 (+)
AMCG00018368 NA other downstream 1035204 9439657 ~ 9447144 (+)
AMCG00018369 NA other downstream 1076499 9480952 ~ 9486146 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000069_02982693_02987269 CLEC19A coding CI01000069 null 2982563 ~ 2987527 (+)