AMCG00018333 (cp063,fopnl,LOC106564614)


Basic Information

Item Value
gene id AMCG00018333
gene name cp063,fopnl,LOC106564614
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 8541991 ~ 8543115 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018333
ATGGCGACAATAACAGAGCTGAAGTGCGCTCTGAAGGAGACCCTGGAGTCGCGGGGGGTCCTGGGGCAGCTGAAGGCCCGTATCCGAGCCGAGGTGTTCAGTGCCCTGGATGACCAGAGCCAGGCCCGGCCGCCGCTGTCCCATGAGAACCTGCTCATCAACGAGCTCATCCGGGAGTACCTGGAGTTCAACAAGTACCGCTACACCGCCTCCGTGCTCACCGCGGAGTCCGGCCAGCCAGAAGTGCCCCTGGATAGACAGTTCATGTCCAATGAGCTGAACGTGGTAGAAGACCCCAGTACCAGATCTGTACCTCTCCTCTATGGCCTGCTGTCCCATTTCCTGAACAGCGGACCGGGTGAGAAAGGGGGCAAGCTGTTCCTGAGGGGTGCTCCTCTAGCCAAGGACTCCATTGCC

Function

symbol description
fopnl lisH domain-containing protein FOPNL

NR:

description
LisH domain-containing protein C16orf63 homolog

GO:

id name namespace
GO:0034453 microtubule anchoring biological_process
GO:0005815 microtubule organizing center cellular_component

KEGG:

id description
K16535 FOPNL, FOR20; lisH domain-containing protein FOPNL

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018333 True 417 mRNA 0.60 4 8541991 8543115

Neighbor

gene id symbol gene type direction distance location
AMCG00018332 LOC106588920,LOC100691027,LOC101464353,LOC102776973,LOC102312408 coding upstream 27099 8486566 ~ 8514892 (+)
AMCG00018327 LOC107674142,LOC107732858 coding upstream 137538 8399833 ~ 8404453 (+)
AMCG00018324 NA coding upstream 190620 8350111 ~ 8351371 (+)
AMCG00018325 xylt1,LOC107567884,LOC107729195,LOC107690267,LOC107733871,LOC107590574,LOC107686990,LOC106588898 coding upstream 226450 8290001 ~ 8315541 (+)
AMCG00018320 LOC104942092 coding upstream 374241 8154810 ~ 8167750 (+)
AMCG00018336 myh11,LOC103025732 coding downstream 10473 8553588 ~ 8592721 (+)
AMCG00018335 NA coding downstream 61606 8604721 ~ 8623654 (+)
AMCG00018337 NA coding downstream 100740 8643855 ~ 8646108 (+)
AMCG00018338 NA coding downstream 107296 8650411 ~ 8666659 (+)
AMCG00018345 snx29,LOC107554010 coding downstream 175625 8718740 ~ 8731928 (+)
G115678 NA non-coding upstream 169164 8352077 ~ 8372827 (+)
G115679 NA non-coding upstream 194155 8294416 ~ 8347836 (+)
G115640 NA non-coding upstream 447542 8094200 ~ 8094449 (+)
G115591 NA non-coding upstream 643811 7897940 ~ 7898180 (+)
G115585 NA non-coding upstream 651090 7883205 ~ 7890901 (+)
G115796 NA non-coding downstream 160042 8703157 ~ 8704903 (+)
G115873 NA non-coding downstream 318966 8862081 ~ 8862511 (+)
G115875 NA non-coding downstream 325427 8868542 ~ 8870342 (+)
G115896 NA non-coding downstream 493215 9036330 ~ 9036583 (+)
G115931 NA non-coding downstream 655762 9198877 ~ 9199440 (+)
G115648 NA other upstream 419820 8119778 ~ 8122171 (+)
G115590 fbxl16,LOC107685932,LOC107568165,LOC107738613,LOC107568127,LOC107690242 other upstream 647542 7893627 ~ 7894449 (+)
AMCG00018280 NA other upstream 1794553 6710482 ~ 6747438 (+)
AMCG00018272 NA other upstream 2381375 6155488 ~ 6160616 (+)
G115299 NA other upstream 2590974 5949463 ~ 5951017 (+)
G115789 NA other downstream 150249 8693364 ~ 8694719 (+)
AMCG00018358 polr3k,rpc11 other downstream 656542 9199657 ~ 9206776 (+)
AMCG00018360 f100a other downstream 696696 9239811 ~ 9245234 (+)
AMCG00018368 NA other downstream 896542 9439657 ~ 9447144 (+)
AMCG00018369 NA other downstream 937837 9480952 ~ 9486146 (+)

Expression


Co-expression Network