AMCG00018345 (snx29,LOC107554010)


Basic Information

Item Value
gene id AMCG00018345
gene name snx29,LOC107554010
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 8718740 ~ 8731928 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018345
CAGAGTTTCACACACAGTAACTACAACCTGATAAAGGAGTCTGCTGCaaccttataataataataactattattagcCTATTCATGGCCAATATTAAATGCTCCCAGAATTCCTATTACGATAAGCTTGTGGAATCTTGTCAACCCTGTCATCTGCGTTGCTATAAAAGAGCCCCCTCTGACTGCACGAGCTATTGCAAAACATTGGCGGACAGGTCTGTGTCGGAGAGCCACATTGTGTGGATCATCCTGGGCGTGCTCTTGTTCCTGAGTGCCTTGACTTTCACCCTTACCCTGGCCCTCAGGACGCTGCGGAAAAATAAATCGAAGCATTTGCCCAAGAACACAGATGTTTCCACAGGGCCTGAGCAGGAGAACAAGAGAGATGCTCATTGTAAGGACACCAGGGTCTCAGAGCTCCTGGATGAAGTAATTGTAAACAACTGGGAAGAAGAGCGAAACAATTCTGGCCCCCAGTACACCTCATGTTTCCCTGTCCCAGCTACAGAGGAAGGTGCCACTATTCTGGTAACTGCAAAAACAGCCCAGCTGTGGAACTATGCACTGGACAGCAATGGGGACCCTGTGCTGGGCTTGTGGCAGTCTGTCTTTACAGCCTGAGCAGGGTAGCAAAGTGGATTTGCACTTCTTCTACGGTCAGGATACTGCACCCCCTCTGTTCAAATGTTTGTCATGAGCCatgagttttgtgtttttgtttggcaCCAATCTTGATCTAACCATGTGTATCTTGCAGTTCAGGACAATCTGTGTGATTTGCAATAGGAATCACAAACTGTGCCGCATATTGAACTGTGTAGATTTGCATGAGTCATTactatttgcttgtttgtgtgtgtgtttagttcaGCGTGttatagcaatcaataatttgaAGTAGAAAGAGAAAGTTGTTTGTGAAACACTTAGGGTCCTTGTATATATCAgggctttgttttgatttgtcttACATGTATGATCCCATATGTAGCCTATTTTGCACCATGTTTGCCAACATGAAATAAACTATCAATAATAAGGAACAGGAGGACCACTTGGGTTAGGCAACTTTAATGGTGTAATAAACGTTATAAGACTGATATACATAATGATAatcctcctcctcatcatcatcatcaactgACCGAGGGTACCTGTCCTGGGACAAGCTGACAGTCGCGCTGTCCACCCACACATGACACTGTTGGTCTCCCTCTGCGGGAACACACTCCCCGTCAGGTGACTGAGTTTGGACGGTGTCATGTGATCAGAAGAGGCTGTGTTGCCTTGCCTGGTCGCAATGCCGTAGCAAATCCCATATCCTTACCTTTTGTCCACCTCCCTGGTCCCGGACATTCACCGACCACCGTACCCCCGCCACACCGTGACTATCCGCTCCCCGCCTTTCGGTGTCGACCACGCACCCCGTCCTGCCCGGAGACCCGCAAAGCGCGCAGGCCCTGCCGGGGCCCCGAGCTGGCGTGATCAGTTGCCGGCTGTGGAAGGAGCCCGTCAGAGGATCATGACATTTCAGCTGTTCACTTGTTCGtgtacacaataaaaacaacaacaacaacagagcaATATTTCTTGACAGCGGACCTGTGTTGAAtatctttcaaaatgaaataaacgaAGTCTTTGCGGGCGTCTTGGTGGGGTTAAGATTAACTGGAACCGAAAGCATAAGATTCATGTTGGTTGTAACATtaactgacattttgaaataaactgCACTGGCACGATGAGCGTTGCCAATCAAAATGATACTAAGAGGCAAAACCTGCAGGAGAGGCTGCTGGATGCTGTCAAACAGtgcCAAATCCGTTTCGGGGGAAGAAAAGAGATCGCTTCTGACACAGACAGCAGGGTGATCTGTCTGTGTGCCCAGTTCGAGGCAGTGCTGCAGCACGGGCTAAGGAGGAGCCGGGGCCTGGCACTCACTGCGGCCGCCCTCAAACAAGCAGCCGGCTTCACCAGCAAAGCAGAAGCAGAGCTGTCGTTCTGGTTCTACGTGAAGGAGCACCTGAATAGGCATGAGCTACAGCGCTTTTACTCCCTGCGTCACATCAGCTCGGAGGTGGGCCGCGGGCGGGCCTGGCTGCGATGCGCCCTGAACGAACACTCTCTGGAACGCTACTTCCACACCCTGCTGGCCGAACGGCCGCGCCTCAGTGTCTTCTATGAAGACTGGGCCTTCCTGATGGACGAGGAGCGAGCGAGCATGTTACCGACCATGGCAGCAGGCCTGAACTCCATCCTGTTTGCCATCAACATTGACAACACAGACCTAAACGGGCAGAACCGAGGACCGCCCTCGGTCTCACACTTGCTGCGGGAGTCCACACAGGGCGTGAGCAGCCTGTGGAAGGAGTCGGCCCAGGGGGTCAGCACCCTGCTGCGCGAGATCAGTACCGCCACGGTCGCAGTGCCAGGGTTCAGCTCCCGGCCTGACAGCCACAGCGACCCCCTGCCCGTCTTGCCCCGCAGCACCTCTGCAGGTAAGGAGCATGAGTGA

Function

symbol description
snx29 Predicted to enable phosphatidylinositol binding activity. Is expressed in brain; gut; and liver. Orthologous to human SNX29 (sorting nexin 29).

NR:

description
PREDICTED: sorting nexin-29-like

GO: NA

KEGG:

id description
K17935 SNX29; sorting nexin-29

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018345 True 2517 mRNA 0.51 9 8718740 8731928

Neighbor

gene id symbol gene type direction distance location
AMCG00018338 NA coding upstream 52081 8650411 ~ 8666659 (+)
AMCG00018337 NA coding upstream 72632 8643855 ~ 8646108 (+)
AMCG00018335 NA coding upstream 95086 8604721 ~ 8623654 (+)
AMCG00018336 myh11,LOC103025732 coding upstream 126019 8553588 ~ 8592721 (+)
AMCG00018333 cp063,fopnl,LOC106564614 coding upstream 175625 8541991 ~ 8543115 (+)
AMCG00018349 NA coding downstream 51701 8783629 ~ 8810474 (+)
AMCG00018348 snx29,LOC107554039 coding downstream 81091 8813019 ~ 8847184 (+)
AMCG00018350 NA coding downstream 200162 8932090 ~ 8937602 (+)
AMCG00018351 NA coding downstream 205687 8937615 ~ 8941636 (+)
AMCG00018354 NA coding downstream 288075 9020003 ~ 9021898 (+)
G115796 NA non-coding upstream 13837 8703157 ~ 8704903 (+)
G115678 NA non-coding upstream 345913 8352077 ~ 8372827 (+)
G115679 NA non-coding upstream 370904 8294416 ~ 8347836 (+)
G115640 NA non-coding upstream 624291 8094200 ~ 8094449 (+)
G115591 NA non-coding upstream 820560 7897940 ~ 7898180 (+)
G115873 NA non-coding downstream 130153 8862081 ~ 8862511 (+)
G115875 NA non-coding downstream 136614 8868542 ~ 8870342 (+)
G115896 NA non-coding downstream 304402 9036330 ~ 9036583 (+)
G115931 NA non-coding downstream 466949 9198877 ~ 9199440 (+)
G115939 NA non-coding downstream 496082 9228010 ~ 9230141 (+)
G115789 NA other upstream 24021 8693364 ~ 8694719 (+)
G115648 NA other upstream 596569 8119778 ~ 8122171 (+)
G115590 fbxl16,LOC107685932,LOC107568165,LOC107738613,LOC107568127,LOC107690242 other upstream 824291 7893627 ~ 7894449 (+)
AMCG00018280 NA other upstream 1971302 6710482 ~ 6747438 (+)
AMCG00018272 NA other upstream 2558124 6155488 ~ 6160616 (+)
AMCG00018358 polr3k,rpc11 other downstream 467729 9199657 ~ 9206776 (+)
AMCG00018360 f100a other downstream 507883 9239811 ~ 9245234 (+)
AMCG00018368 NA other downstream 707729 9439657 ~ 9447144 (+)
AMCG00018369 NA other downstream 749024 9480952 ~ 9486146 (+)
AMCG00018374 NA other downstream 780386 9512314 ~ 9513236 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000063_02041246_02172429 SNX29 coding CI01000063 null 2041246 ~ 2172429 (-)