AMCG00018348 (snx29,LOC107554039)


Basic Information

Item Value
gene id AMCG00018348
gene name snx29,LOC107554039
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 8813019 ~ 8847184 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018348
ATGAGCCAGAGTTCACCAGGGTTCCCAAAGCGCAGCTCAGGGTCCTCAGTGCCTCGGATGAGCACTGACGAATTGGACACCCCTTCTGACTACTGCTCTGCCCCCTTACCTCCAAAGCACACTGTTTTTGTGTACATCCGGATCCTCGATAACGAGTGGAACGTGTACCGCCGCTACACGGATTTCCGAGCCCTGCATCAGCGACTGAGGGCTCGCTTCCCACAGGTGGACGCTTTCCACTTCCCGCCGAAGAAAGCCATCGGAAACAAGGATGCCAAGTTTGTGGAGGAGCGCCGGAAGCAGCTGCAGAGTTACCTGCGCAGCGTGATGAACAAGCTGATCCAGAGCCTGCCGGAGTTCACGGCCTGTCCCACCAAGGAGACCCTGCTGAAGCTGCTTCCCTTCTGCCTTGCCTTCCCGTTGCATGACTTTGAAATGAGGCTCTGCGACGACAAGAAAATCAAACCCAAATTGAAGGACACCCCCCAGGCCTCGGATACCGGAAACAAGCCGACCCGCACCCGAGTGGGCTCCAGGTTCCCAAAACTCAGTCGCAATCAGAACAGAGAAGCAAGAAACCCGGAGCCCCAGAGtggtgacctctga

Function

symbol description
snx29 Predicted to enable phosphatidylinositol binding activity. Is expressed in brain; gut; and liver. Orthologous to human SNX29 (sorting nexin 29).

NR:

description
PREDICTED: sorting nexin-29 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018348 True 606 mRNA 0.57 6 8813019 8847184

Neighbor

gene id symbol gene type direction distance location
AMCG00018349 NA coding upstream 2545 8783629 ~ 8810474 (+)
AMCG00018345 snx29,LOC107554010 coding upstream 81091 8718740 ~ 8731928 (+)
AMCG00018338 NA coding upstream 146360 8650411 ~ 8666659 (+)
AMCG00018337 NA coding upstream 166911 8643855 ~ 8646108 (+)
AMCG00018335 NA coding upstream 189365 8604721 ~ 8623654 (+)
AMCG00018350 NA coding downstream 84906 8932090 ~ 8937602 (+)
AMCG00018351 NA coding downstream 90431 8937615 ~ 8941636 (+)
AMCG00018354 NA coding downstream 172819 9020003 ~ 9021898 (+)
AMCG00018356 NA coding downstream 277129 9124313 ~ 9130120 (+)
AMCG00018357 NA coding downstream 308997 9156181 ~ 9156453 (+)
G115796 NA non-coding upstream 108116 8703157 ~ 8704903 (+)
G115678 NA non-coding upstream 440192 8352077 ~ 8372827 (+)
G115679 NA non-coding upstream 465183 8294416 ~ 8347836 (+)
G115640 NA non-coding upstream 718570 8094200 ~ 8094449 (+)
G115591 NA non-coding upstream 914839 7897940 ~ 7898180 (+)
G115873 NA non-coding downstream 14897 8862081 ~ 8862511 (+)
G115875 NA non-coding downstream 21358 8868542 ~ 8870342 (+)
G115896 NA non-coding downstream 189146 9036330 ~ 9036583 (+)
G115931 NA non-coding downstream 351693 9198877 ~ 9199440 (+)
G115939 NA non-coding downstream 380826 9228010 ~ 9230141 (+)
G115789 NA other upstream 118300 8693364 ~ 8694719 (+)
G115648 NA other upstream 690848 8119778 ~ 8122171 (+)
G115590 fbxl16,LOC107685932,LOC107568165,LOC107738613,LOC107568127,LOC107690242 other upstream 918570 7893627 ~ 7894449 (+)
AMCG00018280 NA other upstream 2065581 6710482 ~ 6747438 (+)
AMCG00018272 NA other upstream 2652403 6155488 ~ 6160616 (+)
AMCG00018358 polr3k,rpc11 other downstream 352473 9199657 ~ 9206776 (+)
AMCG00018360 f100a other downstream 392627 9239811 ~ 9245234 (+)
AMCG00018368 NA other downstream 592473 9439657 ~ 9447144 (+)
AMCG00018369 NA other downstream 633768 9480952 ~ 9486146 (+)
AMCG00018374 NA other downstream 665130 9512314 ~ 9513236 (+)

Expression


Co-expression Network