Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00018354 |
| gene name | NA |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030135.1 |
| NCBI id | CM030135.1 |
| chromosome length | 28454832 |
| location | 9020003 ~ 9021898 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0048172 | regulation of short-term neuronal synaptic plasticity | biological_process |
| GO:0032591 | dendritic spine membrane | cellular_component |
| GO:0045202 | synapse | cellular_component |
| GO:0008328 | ionotropic glutamate receptor complex | cellular_component |
| GO:0030054 | cell junction | cellular_component |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00018354 | True | 489 | mRNA | 0.58 | 3 | 9020003 | 9021898 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00018351 | NA | coding | upstream | 78367 | 8937615 ~ 8941636 (+) |
| AMCG00018350 | NA | coding | upstream | 82401 | 8932090 ~ 8937602 (+) |
| AMCG00018348 | snx29,LOC107554039 | coding | upstream | 172819 | 8813019 ~ 8847184 (+) |
| AMCG00018349 | NA | coding | upstream | 209529 | 8783629 ~ 8810474 (+) |
| AMCG00018345 | snx29,LOC107554010 | coding | upstream | 288075 | 8718740 ~ 8731928 (+) |
| AMCG00018356 | NA | coding | downstream | 102415 | 9124313 ~ 9130120 (+) |
| AMCG00018357 | NA | coding | downstream | 134283 | 9156181 ~ 9156453 (+) |
| AMCG00018355 | NA | coding | downstream | 140588 | 9162486 ~ 9187759 (+) |
| AMCG00018359 | mgrn1 | coding | downstream | 237556 | 9259454 ~ 9285418 (+) |
| AMCG00018366 | NA | coding | downstream | 269434 | 9291332 ~ 9295905 (+) |
| G115875 | NA | non-coding | upstream | 149661 | 8868542 ~ 8870342 (+) |
| G115873 | NA | non-coding | upstream | 157492 | 8862081 ~ 8862511 (+) |
| G115796 | NA | non-coding | upstream | 315100 | 8703157 ~ 8704903 (+) |
| G115678 | NA | non-coding | upstream | 647176 | 8352077 ~ 8372827 (+) |
| G115679 | NA | non-coding | upstream | 672167 | 8294416 ~ 8347836 (+) |
| G115896 | NA | non-coding | downstream | 14432 | 9036330 ~ 9036583 (+) |
| G115931 | NA | non-coding | downstream | 176979 | 9198877 ~ 9199440 (+) |
| G115939 | NA | non-coding | downstream | 206112 | 9228010 ~ 9230141 (+) |
| G115990 | NA | non-coding | downstream | 415134 | 9437032 ~ 9437303 (+) |
| G116002 | NA | non-coding | downstream | 450599 | 9472497 ~ 9477108 (+) |
| G115789 | NA | other | upstream | 325284 | 8693364 ~ 8694719 (+) |
| G115648 | NA | other | upstream | 897832 | 8119778 ~ 8122171 (+) |
| G115590 | fbxl16,LOC107685932,LOC107568165,LOC107738613,LOC107568127,LOC107690242 | other | upstream | 1125554 | 7893627 ~ 7894449 (+) |
| AMCG00018280 | NA | other | upstream | 2272565 | 6710482 ~ 6747438 (+) |
| AMCG00018272 | NA | other | upstream | 2859387 | 6155488 ~ 6160616 (+) |
| AMCG00018358 | polr3k,rpc11 | other | downstream | 177759 | 9199657 ~ 9206776 (+) |
| AMCG00018360 | f100a | other | downstream | 217913 | 9239811 ~ 9245234 (+) |
| AMCG00018368 | NA | other | downstream | 417759 | 9439657 ~ 9447144 (+) |
| AMCG00018369 | NA | other | downstream | 459054 | 9480952 ~ 9486146 (+) |
| AMCG00018374 | NA | other | downstream | 490416 | 9512314 ~ 9513236 (+) |
