AMCG00018356


Basic Information

Item Value
gene id AMCG00018356
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 9124313 ~ 9130120 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018356
ATGGCGGGTCCTCTGCTGGAGTTCGAGACGGAAATGTTTTTGGGCCTGTTCGGTTCCGACGGGCTGTTGGTGACGGCCGAGGGTCTGGGCATTGACCGTGTCCTGCTGCAGTTCCTGCGGGTGTATTCAGAGGAGGGTAGCCTGGAGTATTTAACGGAGCAGCTGCGGTCGGAGGGCGTCAGTCACCTGCCCAGGACGGTGACCAGCGACGTGCAGAGCCACGACCGCTATGACGTGTACACGCAGGGCGGCGTGCTCTTCGTCACCAGCCGCATCCTTGTGGTGGACTTCCTCACCGACAGGATCCCCGCTCACCTCATCACAGGTATCCTGGTCTACCGGGCTCACAAGATCATCGATTCCTGTCaggaggccttcatcctgcGCCTGTACCGCCAGAAGAATAAGACCGGCTTCATCAAGGCCTTCACAGACAAAGCCACTTCCTTCAGCTCTGGGTTCTGCCAGGTGGAGCGCGTCATGAGGAACCTCTTTGTCAAGAAGCTCTTCCTCTGGCCCAGgttcCACGCAGGTGTGAACTCCGTGCTGGACAGACACAAGCCGGATGTGGTGGAGCTGCACGTCTCGTTGACCCCAACCATGAGTGCCATCCAGAGCTCGGTGCTGGACATCATGAACGCCTGCCTGAAGGAGCTGAAACGCTACAACCCCACACTGGAGGTGGAAGACCTCTCCCTGGAGAACGCACTGGGCCGCGGCTTTGAGAAGACAATCCGCCACTACCTGGACCCGTTGTGGCATCAGCTGGGATCCAAGACCAAGTCTCTGGTTCAGGACCTGAAGATCTTGCGCACTCTGCTGCTGTACCTCACCCAGTATGACTGCGTTACCTTCCTCAACCTGCTGGAGACCCTGCGCACCAGCCAGAAGGCTTTCGGGAGCAACGCGGGCTGGCTCTTTCTGGACTGCAGCACATCCATGTTTGTGAACGCTCGAAACCGAGTTTACCAGGTGCCAGAGGCGAAGATTGTCAAGAAGGCAAAGGCGGGAGCCACGGCGAAACCAGAGCAGATCAGAGAAATGGGAGCAAAGCGGGAGCTGGTGCTGGAGAGGAACCCCAAGTGGGAAGCTCTGACAGAGGTGTTGCAGGAGATTGAGAAggagaacagcagctctgagcTCGGCCCTGGGCGAGTTCTGATCTGTGCCAGTGATGACCGGACCTGTGCCCAGCTGCGGGAGTATGTGACACGGGGGGCAGAAGCTCTTCTGACCCGCCTCTATAGTCGCACCTTAGGCAAAAACGAGGCTCTGCCTGAGTTAGGCATAGACAAGAGAGCGCTGGGCAAGGGTAGAGGCAAGAGAGACCAGGAGAAGGGGCCCAAGGCTAAGAAACCCAAAGGCCCAGCCAGGGAGAAGAAAAATGCTAGGAAGCAATCGCTCACTCTCACCCAGATGGTGGGGAAGGCAACCAGGAAGGACGGAGGGCTGGAGGAAGAGCAGGGGGATGAGGAGCCGCTGGGCAGTAGTATAGATGACGacgacgaggaggaggaagagggaaagGAGGAGGAAGGATTTCTCCTCAATCTGCCCTCGGATGCCTATTATGGTATAATGAAAGAGCCACTGACTGTCATCCACCCACTGATGGGCTGCAGCGACCCCTACAGCCTGACACGGGTACTGCACGAGGTGGAGCCACGCTACGTGGTGCTGTACGATGCCGAGGTCTCCTTCGTCCGCCAGCTGGAGATCTACAAGGCCAGCCGGCCGGGCAAGCCACTCAGGGTTTATTTTCTGATATATGGCGGCTCAACCGAAGAGCAGAGATACCTGACAGCCTTACGCAAAGAGAAGCAAGCGTTTGAGCACCTGATCAGGGAGAAGGCTAGCATGGTGGTcccagaggagagggagggaagagaggaCACCAACATGGACCTGGTCCGAAATGTAGAGCCAGCCAACGCCACCACCAACACTCGCAAAGCAGGCATGTATCGATTAGTGGGTGGGCAGGAGATGGCGACCACGCCGGCGCGGGTCATCGTGGACATGCGGGAGTTCCGGAGCGAGCTGCCCTCCCTGCTGCACCGGCGCGGTCTGGACATCGAGCCTGTCACCCTGGAAGTGGGCGACTACATCCTGTCTCTGGACACCTGCGTGGAGCGCAAGAGCATCAGCGACCTGATCGGCTCCCTCAACAGTGGGCGGCTATACACCCAGTGCCTGGCCATGTGCCGCTTCTACCGCCGGCCTGTGCTGCTCATCGAGTTCGACCCCGCCAAGCCCTTCTCCCTGGTGGCCCGCAGCGACCTGCGCCAGGAGATCTCGGCCAACGACGTCATCTCCAAGCTCACGCTGCTCACCCTGCACTTCCCCCGGCTGCGCCTGCTCTGGTGCCCCTCCCCCTACGTCACCGCCGAGCTCTTCCAGGACCTGAAGCAGGGCCGCGCAGAGCCCGACGCCAGCGCCGCCCTGGCCATCACCACCGACTCTGACACGGTGCCCGAGTCCTCTGACCTCTACAACCCCGGCCCCTACGACTTCCTGCTCAGGATGCCTGGGGTCAATGTCAAAAACTGCCGGGCACTCATTAGTCATGCGGACAGCTTGGCAGATCTGGCCTCCCTGAGCCAGGAGAGACTGTCAGAGATACTAGGCAATGCCACCAATGCCAGGCTGCTGCACCAGTTCCTTcacaaaaccatggatacttcTCAGCCTGCACCCAAGGGCAAGGGGGAGTACCGGGGCCGGAGGTGACCACATGGGGCCgtttcatttttctcttttgatACTTGTTGTTGGGCCAACTTGGAGCTACTTGCAGGCTACCTAAGGTGACCAGGGTGGAGAGGATGCTTCACTTCATAAAATGTTGTGTGCTGTGCGCAGTTTCCATCAGGGGTGTCTAGTGTGACTCATTGAAATATGTTTCAGCTGCAGCACTAGTGAGTGCATTACGGTGCGGGGTTTGGCCTTCTTGTATGCTGGTGAAACTGTCGGAGCTCAGCCATGTGGGATGAAATTACGATGGCGCTATACGCACTTTTGTACGTTTAGAAATCGTAAAGCATATCTCAAGACTGTACCCTTTCCCATTCCCTTCAATACTCAGGTGTGAAATGTGCTTTTGATGAAGATATTataattgaaatgtgtgtatatttttttgtgtacccgtttatatatattttatgaaaggGCATAAAAGCTGTATgtcttgtttctgtgtgtctcaagcaagcaagcaagcatttatactattaaaacaaatagtgGAGTGGAGTGAAAGTAAAACCTCAACTGTTGCCttacttttttt

Function

GO:

id name namespace
GO:0000710 meiotic mismatch repair biological_process
GO:0000712 resolution of meiotic recombination intermediates biological_process
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0006296 nucleotide-excision repair, DNA incision, 5'-to lesion biological_process
GO:0000110 nucleotide-excision repair factor 1 complex cellular_component
GO:0000014 single-stranded DNA endodeoxyribonuclease activity molecular_function
GO:0003697 single-stranded DNA binding molecular_function

KEGG:

id description
K10848 ERCC4, XPF; DNA excision repair protein ERCC-4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018356 True 3292 mRNA 0.57 11 9124313 9130120

Neighbor

gene id symbol gene type direction distance location
AMCG00018354 NA coding upstream 102415 9020003 ~ 9021898 (+)
AMCG00018351 NA coding upstream 182677 8937615 ~ 8941636 (+)
AMCG00018350 NA coding upstream 186711 8932090 ~ 8937602 (+)
AMCG00018348 snx29,LOC107554039 coding upstream 277129 8813019 ~ 8847184 (+)
AMCG00018349 NA coding upstream 313839 8783629 ~ 8810474 (+)
AMCG00018357 NA coding downstream 26061 9156181 ~ 9156453 (+)
AMCG00018355 NA coding downstream 32366 9162486 ~ 9187759 (+)
AMCG00018359 mgrn1 coding downstream 129334 9259454 ~ 9285418 (+)
AMCG00018366 NA coding downstream 161212 9291332 ~ 9295905 (+)
AMCG00018365 aanat2,LOC107672440,LOC107670449,LOC107596820,LOC106934031 coding downstream 224583 9354703 ~ 9359686 (+)
G115896 NA non-coding upstream 87730 9036330 ~ 9036583 (+)
G115875 NA non-coding upstream 253971 8868542 ~ 8870342 (+)
G115873 NA non-coding upstream 261802 8862081 ~ 8862511 (+)
G115796 NA non-coding upstream 419410 8703157 ~ 8704903 (+)
G115678 NA non-coding upstream 751486 8352077 ~ 8372827 (+)
G115931 NA non-coding downstream 68757 9198877 ~ 9199440 (+)
G115939 NA non-coding downstream 97890 9228010 ~ 9230141 (+)
G115990 NA non-coding downstream 306912 9437032 ~ 9437303 (+)
G116002 NA non-coding downstream 342377 9472497 ~ 9477108 (+)
G116011 NA non-coding downstream 397362 9527482 ~ 9527757 (+)
G115789 NA other upstream 429594 8693364 ~ 8694719 (+)
G115648 NA other upstream 1002142 8119778 ~ 8122171 (+)
G115590 fbxl16,LOC107685932,LOC107568165,LOC107738613,LOC107568127,LOC107690242 other upstream 1229864 7893627 ~ 7894449 (+)
AMCG00018280 NA other upstream 2376875 6710482 ~ 6747438 (+)
AMCG00018272 NA other upstream 2963697 6155488 ~ 6160616 (+)
AMCG00018358 polr3k,rpc11 other downstream 69537 9199657 ~ 9206776 (+)
AMCG00018360 f100a other downstream 109691 9239811 ~ 9245234 (+)
AMCG00018368 NA other downstream 309537 9439657 ~ 9447144 (+)
AMCG00018369 NA other downstream 350832 9480952 ~ 9486146 (+)
AMCG00018374 NA other downstream 382194 9512314 ~ 9513236 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000063_01890725_01899483 ERCC4 coding CI01000063 null 1890392 ~ 1899546 (-)