AMCG00018359 (mgrn1)


Basic Information

Item Value
gene id AMCG00018359
gene name mgrn1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 9259454 ~ 9285418 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018359
CGCGGACGCTGCTGGCTGCCCGCGTATGTGGCGCGACACCCTGTTGCTGGGACGGAACACAACAGCCACCgtctttcctgtttgtttatgttCTCGGCAGTTTTCGGGTTTTAAATCGTCACATCTTGCGGACTTTACCCCCATTTTTGTGGACATTATCAATGTAACGCAGAAGAGATTGCCGTCAACGCCTGAGAtctggagagagaaaaacatcgAGCATCAACAACATTAAGAAACCCAGAAATCCTCCATCATGTCTGACTGATTCTTTTGCCCATTTATTTTCGCAATCGTcgtcattgttattattgtattcctCAACCTGGAGGATCTCATTGAGTTTTCAAATAGAAAAGGCTGTCAGTAGTGgcattacagcattttttcgGGCACTCAACGTTTAGAGGTTAGCGAGAAAGATGGGGTCGATACTCAGCCGGAGGATCGCTGGGGTTGAAGACATTGATATTCAAGCCAATTCAGCCTACAGATATCCCCCCAAATCGGGGAACTACTTTGCCAGTCATTTTTTCATGGGAGGGGAGAAGTTTGACACTCCACACCCTGAAGGGTATCTGTTTGGGGAAAACATGGACCTCAACTTCCTAGGGAACAGGCCTGTACAGTTTCCATATGTGACCCCTGCACCTCACGAGGCTGTGAAGACCTTGAGGAGTCTGGTGAACATCAGGAAGGACTCGCTGCGCTTGGTCAGGTACAAGGATGACTCTGACAACACCACAGAGGAAGGGGGGAAGCCGCGGGTGCTGTACAGCGTGGAGTTCACCTTCGATGCTGACGCGCGTGTGGCTATAACTCTGTACTGCCAGGCGTACGAGGAGTTCTCCAATGGGATGGCCGTgtACAACCCCAAGAACCCTGGTATGGTGTCCGAAACGGTGCATTACAAGAGAGGGGTGAGCCAGCAGTTCTCCCTGCCGTCCTTCAAGATCGATTTCTCCGAgtggaaggaggaggagCTTAACTTTGACCTGGACAGGGGAGTGTTCCCCATTGTGATCCAGGCTGTGGTAGATGAAGGAGATGATGTCATGGGACATGCACATGTTCTTTTGGCAGCCTTTGAAAGAGTGGATCGCGTCAGCTATCTGCTACAGGAGATCTACgggattgaaaacaaaaataaccagGAGACAAAGCCCTCAGATGATGAGAACAGTGACAACAGTAACGAGTGTGTGGTGTGCCTGTCGGACCTGCGGGACACACTGATCCTGCCCTGCCGACACCTGTGTCTCTGCAACTCCTGCGCCGACACCCTGCGATACCAGGCAAACAACTGCCCCATCTGCAGACTGCCTTTCAGAGCTCTGCTTCAGATCCGCGCTGTCAGGAAGAAGCCCGGCGCGCTCTCCCCGGTGTCCTTCAGCCCAGTCCTAGCACAGACCATGGACCATGACGAGCACTCGAACTCGGACAACATCCCTCCCGGTTTCGAGCCCATCTCCCTGCTGGAGGCTCTGAATGGCCTGCGCTCAGTGTCCCCTGGGATCCCCTCTGCGCCCCTGTATGATGAAATCAATTTCTCAGGGGGCCTTGGTGACTCCCTGCCTCTGACAGGCCGCCAACTGGGCTCAGTGGAGCGCTCTGGAGACAGCGGCCTGCAGAAGAGCAAGGCCAGCAAGTCCCCAGACAGACCCCTGCGCTCCCCCTCGTCCCCCATCCAGGAGGAAGACGAGGAGAAGCTGTCCGAGGTGTCCGATGCCCAGCCCCACGCTCTCCTCTCTAGCAGCCCCACGTCCGCCGAGACCACTCCGGCTGGGGAGGCTCCAGAGTCCGTCACCCCTGATGAAGACGAGCGGCCGCGCTCCGTGGGGGAGATCCTGCAGGACTGCAGCAGCGAGCGCAGCAGCCTGACAAAGGCTGAGAGCGACTCCCCGCTGGAGCTGTCCCTGCCAGGCTCATCCGAGTCCACGGAGAGCCTCAAGAGCCAGAGCACCAACAGCTCGAGCCAGCCCCTCCTCTACCCCCCGAGCAGCCTGCACCTGGAGGACGAGCAGCTCACTCCGTAATgccagcccagcccagctcaGCCCAGCCACACCCAGCCCTGACCTGCTTCTTCGAAAACTGCCCGTCCCCTCCACCCTCTTCTCCTCTGACAAAGTATAACCCCCTCCCCTCTTCCAGCCCCTGACCTCCTCTCCATGGGCCAGCCAGTACATCAGGGATTGTGGTCAATTGGAGCTTTTCCTATAATTAGAAGGTGCTCAGTTCAGACAAGGTTGCAGAAAATAACCCTCGTTGGGAGACTGCTTCATCCTTCCCACAGCTGCTTTAAGCGGTGGTTTTGAAGAAGTCGAAAACCTGTTTTCACCTGGGGAATGGCATTACTTGGGTCGGTATGGCTCATCGTGACTGTAATTGACAACAAACCCTGCTTCCCAGATGGATGGCACCTTCCCCAAGTCTCAGCTCAGCCCCTGGAGTGGCCTGCTCATTGAGTAGCAGTACAGCTCCACGGGCTGGACTCTCTTCTCCTTTCCACTCCTCCCCTCCCTTTCCTAGACCTTCAACAGGTAGCGCTTGCTGAAACCCACCCCCTGTACAGCAGCCCATGTTTCTGACGGAGACTCAACACACAACGCCAGACAGTGGGGCGCGGTTCAGACCCCTCCCCACACTGCCATTGCCTTCATTACACAGCATCTCAACGCACCACTTCCTGCAGGTGTGTCTATGGAATGTCATAATCATTAGTGAGGTAATCCCCTTGTGTTGTTGATGATAAATGGAGATAGATAAATGCTGCACTCCCATATTTAGTGCTTTAATACTATCCAGGGGCAACTGTTCAGTAAAAGTCACAACAATGCCCTTAAAGTTAGTAATATGTGTGATACGATCTGTACGCACACACAGGAGGTGATTTTCTGGGAGAGAATACGGTGGCATATTCCTTGTCTGGAATAGGAGAGTGATATGGTTGCTTTAAGAATCGGAAAATGATTCCCAAGTCTCGCTTCTTGATCTACAGCTATTAATCTAAACATCACCAAAGTGGGAAATCTACATCTTCTGTATAGTCACCTCAAGCTGACCTCCTCAATGGTACAGGCAGAAAACTGTGAACACCTTTGTACTACATATCGCTAATAATTTCAGATGGTGAAACACAACATCCGTCGTCCTGATTAATTATATCTGTCATGTTTCATTTctccttcctttttttctttctaatatgAACTTTTTCATATCCTGTTTCTTGTTGTCATCGTCACCTTGATCCTCGGTCGATCAATACCCGTCTGTGAATAGAAAAGGGCGGCTTCTACAGCAAGGATACGTAAAAACCAGCATTCTTTATTTAACAGTCGAGAAGATGATCCAGCACTGTATTACAGCTGTGCAGAGAAGGCGCAGCGACTCATTTTACTGTTCGACCTGCTTCAGGATTTTGGAATACCATCTACACAGCTGATCATTttgtaaaccatttaaaaataaaaaaacataattctatTAACTTTTTACATGAGATAGTGGCTCTTGTAGCCTATGACCATACCTGTACAATACACGTGTGACTGTTTGTAGTGTGCTGCCTCTCGTACATTGATGTAAAGCATTTCGCTGAAAGTACTGTTCCAGCTCACTTTTCATAagcactgtatttgtgttttcctaCGCTCTGGAAGGATCGTCACATTTCAAAGACTTTATATTGGGTACCAGGTTGTGTGCTCAAATGTTTTTCACGCTCTCTGATGCAGAGATGAAATGCTCTCAATGAATAGTGCTTTAAGTGACCAGTGTACACTGCCCACCTGTCTGCTATTATCATGCCCCAGTCTCAGGATATCGGCCCACTACACCTAAGATTTCTTGTATTCCTGACAGCTTTGCTATACGTAAGGCTCTGCTGGGTGGTTGAGTGAGTACAACAAGCAGAAATTAATCTATATCACActtctaatgtattttaaaatgtaggccCCTGGTGAAGGGGACAAATCAGAAAGCAGTGTGTTCATCTTCACACTACACTACTATTTTCCTACCTTGACAATGGCTAGCTGGGCAGTCTTTGGTTCTGTTTCCATATCCTCTTGCATATAGGTACATGTGCCTTTTGAAGACAATGATATTACCTGGCTGCTAGTTGTTTTGTGCTTCTGTATTCTCAAGCTGCAAGAAGATACCACAAAGGAGGAATTCATATAGTTTTGAACTGTAGTAGACTTAGAAGACCTTGGCATTAAGACTTAACTCGGGGGGGCGTCACCTTAAACTGGTGCACAGTACCTgggctgtgtctgtctgcttcAGCCCTTCTCTGTACGACTGAAATGTAGAGGAAGAGTAGGTTAAATACTGAGAATAATACTGCATTAGGTTCTGCCTTCACTTATTCGCTGTTTGTCTGTATAAAGAGTATCTGCATCCTCTTTCTGCGTACATATTTACTCTCCCTTCAGTGCACACagggaaatgtaattatttttctgctaGAAATGGTGTGAGAGGTGTGAGTCTGTCTTTTTCTGCATGAAAAATGCAAGTAAGGTTGTCCTTTCTTTGCCAGCTGGTGGACCAGTATAGAAGTTTTGAAATCTATCCCAAAAACTTATGTTAATAgatgttttatatattcattagaTGACTGCCGTTTTAATGAAGTAGATCTCACCATTTCACCAGTGAGGACGGGCCAGATGGTACAGTTGTTATTGTACCTGGGATGGTGATGAGACATCCCTCAACGCCACAGGCTCACGGTCACGCTGGGATCAGTTCAGGTCTTTGGGATCCACTTTCCATAACCCTGACTGGGATCAGATACAGGGCTCATGACATTTACCAGATCACTTGTGTCTTTTTGAGTTGACATCCTTTAGCTACTCCAGGCTACGTGGGTGGTCATGTGGCCTTATGCTCGCCCTGCCCCTATTCCAAAGCATGTTGCCAGAAAATATTGCGTGTGAAGCTGGTTATTGTCCTTTGAGCCTTAGAAAACAAAAGTTTTCTCCCTGCTTCCCCCGTCTGTGTGCTGCTTTTGTAAAGATAAGTCAATGATTTACCTGGAGGTCTAGGCTAATTACTGCAagagcatgtttttaatgtagaaCTGTACACTCTGTAGATGTTCAGCGATGTGTTATTTATCAATCTATTATGACTATGTTATTTGCCTTTCGATGTTTTCTTTTGGTATTGCTTTTAATATGCCTTCTGTCGGTGCTGTGCTTAGAAAATGCTTCTTAACGGCATCGTATATCTGTAAATTAGATTTGGCATGTGCATCCTTAGAGCTGTAGATCTTTTATTTCTTGCtgctttgatttgcttttgGTAGCAGTTGGCTAGGGGCATAATTGCATActgaagtgagagagagagaaaccggcattgatttattattgGCTTCCCTAGCAGAGGGAGAACATCAGAcgtatatactttttaaaagtattttactgtTAAGGAGTACAGAACAGGATTTATGTTGTCCACCCCCAGTAACTTGGTGGTGTTTGAACTGTAGGATAGGAGGCACAGGGACTTTTTAACCTCTCTGCTGTGAAGAGCCCAGTGAAAAGCTTTCTCCAGATATATATACTGGCTCTCAGTGAGCTGATGGAAATGTCAGTGTCTGTTTCCACATCAAAAGGAGCTGCTAGGTGCTTTGATCAGTCCTGGAGTCGGACTGGCTGAGGATGTTCAGTGATGGAGCTCGATTGAGAGGCCGAGCTTGTTTGCTTGTTGTCTGGAAAACACAGCAAAGTTGCTTCCCTGTCATGGAGAGGGTCGTGCTTTTATCAACAAAGCCGAGCAGGCAAaatatttgattacaaagcAGGCCTAATTGAAGCCGCTGCAGCCGGCATCAGATATTCAACAGCAGGATTGTGTTACATACAACTTTTATAACCAGGCATGACGTTTtaaaagccccccccccacatgcTTTCATTCATGCTTcctgtgtacagtatataaagaCCTTTCTGCAGTTTCCGTCACAGTCAACTCCACAGCCTAAATCTCAACATTGTAGCTATGCCACAAGTACGTTTTTTTGAAAAGGGGATTTAAAAACCAGAAGCTACGATTTGCCACCAGTCCATACGTGCTTTGAAACAGGCTGTGAGATTTCCAACATGGCTGCTTTGTGTTTAGAAGTGCGTATGTGCTGATGCATTTTTTCTCTAccattgtctttttatttaacttCTATGAAGAGATGGGggagt

Function

symbol description
mgrn1 Enables ubiquitin-protein transferase activity. Involved in endosome to lysosome transport; negative regulation of signal transduction; and protein monoubiquitination. Located in several cellular components, including early endosome; endoplasmic reticulum; and nucleus.

NR:

description
PREDICTED: E3 ubiquitin-protein ligase MGRN1 isoform X2

GO: NA

KEGG:

id description
K10604 MGRN1; E3 ubiquitin-protein ligase MGRN1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018359 True 6221 mRNA 0.48 15 9259454 9285418

Neighbor

gene id symbol gene type direction distance location
AMCG00018355 NA coding upstream 71695 9162486 ~ 9187759 (+)
AMCG00018357 NA coding upstream 103001 9156181 ~ 9156453 (+)
AMCG00018356 NA coding upstream 129334 9124313 ~ 9130120 (+)
AMCG00018354 NA coding upstream 237556 9020003 ~ 9021898 (+)
AMCG00018351 NA coding upstream 317818 8937615 ~ 8941636 (+)
AMCG00018366 NA coding downstream 5914 9291332 ~ 9295905 (+)
AMCG00018365 aanat2,LOC107672440,LOC107670449,LOC107596820,LOC106934031 coding downstream 69285 9354703 ~ 9359686 (+)
AMCG00018373 NA coding downstream 234249 9519667 ~ 9520987 (+)
AMCG00018371 NA coding downstream 260123 9545541 ~ 9561135 (+)
AMCG00018383 NA coding downstream 390270 9675688 ~ 9685520 (+)
G115939 NA non-coding upstream 29313 9228010 ~ 9230141 (+)
G115931 NA non-coding upstream 60014 9198877 ~ 9199440 (+)
G115896 NA non-coding upstream 222871 9036330 ~ 9036583 (+)
G115875 NA non-coding upstream 389112 8868542 ~ 8870342 (+)
G115873 NA non-coding upstream 396943 8862081 ~ 8862511 (+)
G115990 NA non-coding downstream 151614 9437032 ~ 9437303 (+)
G116002 NA non-coding downstream 187079 9472497 ~ 9477108 (+)
G116011 NA non-coding downstream 242064 9527482 ~ 9527757 (+)
G116019 NA non-coding downstream 279308 9564726 ~ 9566691 (+)
G116020 NA non-coding downstream 283046 9568464 ~ 9569497 (+)
AMCG00018360 f100a other upstream 14220 9239811 ~ 9245234 (+)
AMCG00018358 polr3k,rpc11 other upstream 52678 9199657 ~ 9206776 (+)
G115789 NA other upstream 564735 8693364 ~ 8694719 (+)
G115648 NA other upstream 1137283 8119778 ~ 8122171 (+)
G115590 fbxl16,LOC107685932,LOC107568165,LOC107738613,LOC107568127,LOC107690242 other upstream 1365005 7893627 ~ 7894449 (+)
AMCG00018368 NA other downstream 154239 9439657 ~ 9447144 (+)
AMCG00018369 NA other downstream 195534 9480952 ~ 9486146 (+)
AMCG00018374 NA other downstream 226896 9512314 ~ 9513236 (+)
AMCG00018372 LOC106517353,LOC107388090,LOC103381742,LOC101078739,LOC103481046,LOC108270924,LOC108413555 other downstream 276643 9562061 ~ 9564564 (+)
AMCG00018380 NA other downstream 321243 9606661 ~ 9612918 (+)

Expression


Co-expression Network