AMCG00018360 (f100a)


Basic Information

Item Value
gene id AMCG00018360
gene name f100a
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 9239811 ~ 9245234 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018360
aTGGCAACGCTGGCCTTCTGTTCCGAGGATGCTTGGTGGGTGACGGTGGCCGGCCAGCCTGGAGGGGGTGCCTGTGAAGGGGGCTGCCCTGGAGTCCACAGTCCTTGctggctggggggggggggggtcatggCCCAGCTGAcctgtggtgggggggaggttgCCATGGAGGCGATGGGACTACTGCTGTTGAAGCTCTCCGAGGCCTTGAGGCGCGAGAACATGGTCAGAGCATCAGGGAAGTTGGGGGGCGTCGCCGGTGTGTTGGCTGGAGTGCACATCTGCAAgtggagacggagagagagggGTCTGCAGTCTAAGCCTTTACAGTTTctctataaaaggaagcaaaaaGGATGTAAAGATACCCCGTCCTCCTCATTCCCTCAAGACACTGCCGACATTCCTGCGCTGGCCCCCGTGctcccttttatttatttggatttttctCATCGGCTCCCCTTCCTGTGGCTGCTCAGTGACCCTCTGCTGCCCCCCTACCAGCCACACCGCGACCCCTCGCAACCCCTATTGTCCTCCTTCTGCAGGAGCTCCCAACCAATCCCGCTTTCCCCATTCGTCATCGATCAAGGTTGGAGGCTGGCAAAGGGCTCGGTTTTCAGGTTAAAGCAGCCTCAAGCACTCAGTGATGCCTATAAGGAGATCGGTTGA
>TU145192
GAAGgacatacaatatttatttagaaacacacaaaaaaatgataaGTTAATTAGGTAGTCCACAAATATTGTGGGAACGGTATCAATACAGTCatagagggagaaaaaaaatacatacatgaaaaccGATCTAGGAACAGGCAATCCTAAGATAATTCAATAAGAAAAGGGTGCAAAACTGgggagaaacaaaaactaaagaaacaaaaatcaaatgaaattagGGTTACTGGATTACCTATCTCACTGAAAATGTCTTGttctagttttcttttcttgtttggttttttaAGACATAACAGAAACCGACATTGAACAGACAATTTTGCTTAGTTTTTTTCGTTTCAAATAAATGGACAGCcaaaaatgataatgaaaatacaaaatcagatTTGCAGGGATAAAGGCGACCCTgaaattgcatatttttttaaattcataaatatcTTCCCCTGGCCCTTCCAACCTTTAGGGAAATTAAACCCAGTCATtatttggaatacattttagaagaaTGCTAAATCATGACagattttttcttcattttgacttaaaaaaaaaatgttatacatttggACACATCATGCAAGTGGCAAGTCTGTTTACACACATTTCTAGTAGTCTCATTTCGTTTCACCTCAGCAATTGCTCGatacccccaacccccaccccaccccaccccacaaaaaataatcacaacCCTCCCaaatatcataaaaataataaaccatgatttaaaaatgcctaaatctgcatgtgtttgcagaaaacaaaatctgtcttttttaaatgtccatATACATAACCCTTTACCCTGCTTAGGGATAAAAAGAAAGATCCTTAGTGAGTGTATTGTCCATGGTGGAGACGGCCAGAGCCCAGTGTAAAAAATACTAGAACTCAGTGGGATTCTGAACAGTGCTGTCAACAGAGAATATTCCCAGATTGGCAGGAATAAGTCAGGTGACTGTGGAGGCAAGCAGTGTCCCATCATGCCACAGGAGAAAAATGTCTCCACGTTTCTCGtttatcatttcagtttttgaaaATTCAGTGATGCAGTGCATACACTGGTACCACAGGCCTCAATAACAGCAAAGATTTgaggaaaaagaaataaaaagtgttaagaaaggtgatgagaggtgtttcCATTCATGTTCACTTCTTTGAAGATCCTTGAACAAAATCCTGGGGTTACTTGCAGCAtgatccttatttattttttatagacagattttgtacttttttttttttatgtattaaaaaaaaaaaaaaaaaacactttataaaacTTCCCGTTGCGGACTTATTATTTATAacggtgtgtgtgcgtgttcattggtggtggtggtgtgagTTTAGTTTTTCCCCTCCATAATAGTCCACATTGCTTGGTTCCTTGGTTACATACCCCTTCCCCTAGTCCCCAGCCTACTGGCTGAcagtaaaagagaaaatgtgaccccccctcccccctctctatTAGTGTGTGGCCCTTCAGTCCAGgccctcatctctctgcctccaTGGCAACGCTGGCCTTCTGTTCCGAGGATGCTTGGTGGGTGACGGTGGCCGGCCAGCCTGGAGGGGGTGCCTGTGAAGGGGGCTGCCCTGGAGTCCACAGTCCTTGctggctggggggggggggggtcatggCCCAGCTGAcctgtggtgggggggaggttgCCATGGAGGCGATGGGACTACTGCTGTTGAAGCTCTCCGAGGCCTTGAGGCGCGAGAACATGGTCAGAGCATCAGGGAAGTTGGGGGGCGTCGCCGGTGTGTTGGCTGGAGTGCACATCTGCAAgtggagacggagagagaggggtgggtaAGAGATGCGTATTGGACAGTGAACTTACACACAGCACCTTTCATCACCAGCAGGAGGCCAGAGCGTTTCACCAGGGAATCAGTGTGGAGAGCAgctatgtacagtgagggaaaaaagtatttgatcccctgctgattttg

Function

NR:

description
FAM100A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018360 False 672 mRNA 0.59 3 9241362 9245234
TU145192 True 1983 TUCP 0.42 2 9239811 9241815

Neighbor

gene id symbol gene type direction distance location
AMCG00018355 NA coding upstream 52052 9162486 ~ 9187759 (+)
AMCG00018357 NA coding upstream 83358 9156181 ~ 9156453 (+)
AMCG00018356 NA coding upstream 109691 9124313 ~ 9130120 (+)
AMCG00018354 NA coding upstream 217913 9020003 ~ 9021898 (+)
AMCG00018351 NA coding upstream 298175 8937615 ~ 8941636 (+)
AMCG00018359 mgrn1 coding downstream 14220 9259454 ~ 9285418 (+)
AMCG00018366 NA coding downstream 46098 9291332 ~ 9295905 (+)
AMCG00018365 aanat2,LOC107672440,LOC107670449,LOC107596820,LOC106934031 coding downstream 109469 9354703 ~ 9359686 (+)
AMCG00018373 NA coding downstream 274433 9519667 ~ 9520987 (+)
AMCG00018371 NA coding downstream 300307 9545541 ~ 9561135 (+)
G115939 NA non-coding upstream 9670 9228010 ~ 9230141 (+)
G115931 NA non-coding upstream 40371 9198877 ~ 9199440 (+)
G115896 NA non-coding upstream 203228 9036330 ~ 9036583 (+)
G115875 NA non-coding upstream 369469 8868542 ~ 8870342 (+)
G115873 NA non-coding upstream 377300 8862081 ~ 8862511 (+)
G115990 NA non-coding downstream 191798 9437032 ~ 9437303 (+)
G116002 NA non-coding downstream 227263 9472497 ~ 9477108 (+)
G116011 NA non-coding downstream 282248 9527482 ~ 9527757 (+)
G116019 NA non-coding downstream 319492 9564726 ~ 9566691 (+)
G116020 NA non-coding downstream 323230 9568464 ~ 9569497 (+)
AMCG00018358 polr3k,rpc11 other upstream 33035 9199657 ~ 9206776 (+)
G115789 NA other upstream 545092 8693364 ~ 8694719 (+)
G115648 NA other upstream 1117640 8119778 ~ 8122171 (+)
G115590 fbxl16,LOC107685932,LOC107568165,LOC107738613,LOC107568127,LOC107690242 other upstream 1345362 7893627 ~ 7894449 (+)
AMCG00018280 NA other upstream 2492373 6710482 ~ 6747438 (+)
AMCG00018368 NA other downstream 194423 9439657 ~ 9447144 (+)
AMCG00018369 NA other downstream 235718 9480952 ~ 9486146 (+)
AMCG00018374 NA other downstream 267080 9512314 ~ 9513236 (+)
AMCG00018372 LOC106517353,LOC107388090,LOC103381742,LOC101078739,LOC103481046,LOC108270924,LOC108413555 other downstream 316827 9562061 ~ 9564564 (+)
AMCG00018380 NA other downstream 361427 9606661 ~ 9612918 (+)

Expression


Co-expression Network