AMCG00018365 (aanat2,LOC107672440,LOC107670449,LOC107596820,LOC106934031)


Basic Information

Item Value
gene id AMCG00018365
gene name aanat2,LOC107672440,LOC107670449,LOC107596820,LOC106934031
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 9354703 ~ 9359686 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018365
cCAGGTCATCGTAAGCTGGCTGTGACTCAAAGCATTCCCTCAGTATGCAGTTGAAACTGAAGATGTCTACAGGTTAGTTTTACGCCACTTACATTGTTTCCttgttgtcttttcttttctcttatCTCAGTGACAAAACCTAATCCAGACACATGACTGGGATCTTAAAGCAGGGCCTGTCCGTGCCGTGTGTTCTGAACAGCTGGATACTCCGAGACGGAACCCGAGAGCGAGCCCCACAAATCTGCCCTCTCCCTCCGCTGGGTTAATCCCAAAGCCCACATGTCCTTGACACCTGAGTGCCAGTGATGTCGGAGGCGGGGTACGATGACCTGGTCTGCTGCCCCTTACTCCCGCCAGACTGGGAGTACGCTGTGTTACGCTCTACTGGAAGACCGGGGGGGGCTCCTCTCACGACTGGCGTGTGCCCTGCAGGTGTGCGGCCAACATGACCCAGCCTCAGCTGTGCGGCTCACCCTTCCTCAAGCCCTTCTTCCTGAAGACCCCTGTGAGCCGGCCCTACACCAACCGCCAGCGCCGGCACACCCTGCCGGCCAGCGAGTTCCGCAACCTCACCCCACAGGACGCCGTCAGCGTCTTCGAGATCGAGAGGGAAGCGTTTGTGTCGGTGTCTGGGGAGTGCCCGCTCACACTGGACGAGGTCCTGCACTTCCTGGGACAGTGCCCCGAGCTGTCGCTGGGCTGGTTCGAGGAGGGCCAGCTCGTAGCCTTCATCATCGGCTCCGGCTGGGACAAGGAGAGACTGGCACAGGAGGCATTGACTAAACACGTGCCCGACACGCCCACCGTGCACATCCACGTGCTGTCAGTGCACCGGCAGTGTCGCCAGCAGGGCAAGGGCTCCATCCTGCTGTGGCGCTACCTGCAGTACTTGCGCTGTCTGCCCGGCCTGCGCAGGGCCCTGCTCGTCTGCGAGGAGTTCCTGGTGCCCTTCTACCTCAAGGCCGGCTTCAAGGAGAAGGGCCCCTCCGCCATCAGCGTGGGGGAGCTGCTCTTCATGGAGATGGAATACCCGCTGGGGGGGGCGGTGTTCGAGCGGCGGAACAGCGGCTGTTAGCAGCGCGGGTCCCAGCTTTAGACTGGTGAGAACTTTGTATCCTTAGGGGTAGCGCTGGCTCCCCAGGTCACACACCCCTTCCCTCCCACAGGGTACCCAGTGGGTGAGACACTGTAACACCATCCCCTGCGCAGACAAGGACACCCCTGCACTGCTTCATATTTCCACAAACTGCAAGATGAACacattgctgtacaccagcactGCACCTACGCTCCAGCGTTGCTCCCCTAGGGTTTGAAACgaaacactgcactgcatgaACTCGGCAAAATGTTTGTTCTGTATGTAGTTCTCCTGGGGGTTAGGGGAGAATGCCTGAAAATGAAAGGTAGCCCTGATTTCCCCACACAGTATGACAAAAACATTGGGGTTCAAACACACACTCCATCCTCAGAATTGCCCCGATTGCTTTCCTGTTCAGCACAGCATGTAGTGCATCAACAGTGGCACCAGACCGGTGTGTTTCTGGATGCCAATGCACATATTCAAACCCCCCTGCAGTCAGTGCCCTTTGACGCACGGTCACCTGATTAAAGGAGAAACCGCAGTACGGGTTTGCTGTTTATctcaaaagtaaaaacattttgtgggtAATTGTGGTAATTGTGAAACtcgagtccagtccagtccaaagACAGGTAGTCAAATGTATAGTGTACATACTTGACTTTGTATaacaaatgtttgcatttttgtatctgCTTACACATTTCAGTGCAAGGTATTTTCTAAAGTGCTTATGTTGCTGATCGAAGAGGTCAAATCAACATGAGCTGTTACGCAGGAAGCATATTGTCCTAGTCTGTTGTAAGAAGCTTGTTCATACTTGAGACTTgtacatctgttttttgttcctaattcttctgtattatatacatttgctttgataataaaaaaaaaaaaaa

Function

symbol description
aanat2 Enables acetyltransferase activity. Acts upstream of or within several processes, including neutrophil chemotaxis; photoperiodism; and positive regulation of circadian sleep/wake cycle, sleep. Predicted to be active in cytoplasm. Is expressed in brain; ovary; and retina. Human ortholog(s) of this gene implicated in advanced sleep phase syndrome. Orthologous to human AANAT (aralkylamine N-acetyltransferase).

NR:

description
PREDICTED: serotonin N-acetyltransferase-like

GO:

id name namespace
GO:0009648 photoperiodism biological_process
GO:0007623 circadian rhythm biological_process
GO:0004059 aralkylamine N-acetyltransferase activity molecular_function

KEGG:

id description
K00669 AANAT; arylalkylamine N-acetyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018365 True 1986 mRNA 0.53 6 9354703 9359686

Neighbor

gene id symbol gene type direction distance location
AMCG00018366 NA coding upstream 58798 9291332 ~ 9295905 (+)
AMCG00018359 mgrn1 coding upstream 69285 9259454 ~ 9285418 (+)
AMCG00018355 NA coding upstream 166944 9162486 ~ 9187759 (+)
AMCG00018357 NA coding upstream 198250 9156181 ~ 9156453 (+)
AMCG00018356 NA coding upstream 224583 9124313 ~ 9130120 (+)
AMCG00018373 NA coding downstream 159981 9519667 ~ 9520987 (+)
AMCG00018371 NA coding downstream 185855 9545541 ~ 9561135 (+)
AMCG00018383 NA coding downstream 316002 9675688 ~ 9685520 (+)
AMCG00018395 NA coding downstream 331140 9690826 ~ 9691578 (+)
AMCG00018385 NA coding downstream 349293 9708979 ~ 9711300 (+)
G115939 NA non-coding upstream 124562 9228010 ~ 9230141 (+)
G115931 NA non-coding upstream 155263 9198877 ~ 9199440 (+)
G115896 NA non-coding upstream 318120 9036330 ~ 9036583 (+)
G115875 NA non-coding upstream 484361 8868542 ~ 8870342 (+)
G115873 NA non-coding upstream 492192 8862081 ~ 8862511 (+)
G115990 NA non-coding downstream 77346 9437032 ~ 9437303 (+)
G116002 NA non-coding downstream 112811 9472497 ~ 9477108 (+)
G116011 NA non-coding downstream 167796 9527482 ~ 9527757 (+)
G116019 NA non-coding downstream 205040 9564726 ~ 9566691 (+)
G116020 NA non-coding downstream 208778 9568464 ~ 9569497 (+)
AMCG00018360 f100a other upstream 109469 9239811 ~ 9245234 (+)
AMCG00018358 polr3k,rpc11 other upstream 147927 9199657 ~ 9206776 (+)
G115789 NA other upstream 659984 8693364 ~ 8694719 (+)
G115648 NA other upstream 1232532 8119778 ~ 8122171 (+)
G115590 fbxl16,LOC107685932,LOC107568165,LOC107738613,LOC107568127,LOC107690242 other upstream 1460254 7893627 ~ 7894449 (+)
AMCG00018368 NA other downstream 79971 9439657 ~ 9447144 (+)
AMCG00018369 NA other downstream 121266 9480952 ~ 9486146 (+)
AMCG00018374 NA other downstream 152628 9512314 ~ 9513236 (+)
AMCG00018372 LOC106517353,LOC107388090,LOC103381742,LOC101078739,LOC103481046,LOC108270924,LOC108413555 other downstream 202375 9562061 ~ 9564564 (+)
AMCG00018380 NA other downstream 246975 9606661 ~ 9612918 (+)

Expression


Co-expression Network