AMCG00018368


Basic Information

Item Value
gene id AMCG00018368
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 9439657 ~ 9447144 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018368
ATGTCGAGGCGGAAGAGAAAATTGGCACCGGGGTTGGAGATGCCTGTCCTAGAGGTGCCCACTCGGAGCAAAGTGGGTCAAGGCGAGCGGCCTGGGCCTGGACCTGGACCCGGACCCAAGGAGACTGAGCAGAAAGCCTGTCCTGTCACGCTGACCAGTCAGTATTTCACAGTGGACAAGAGTGACTTCAGGTTAGGGGAGGATTTCTTCAATCAGTCCTGCGTTAACCTGGCCAAAGCTTTACTGGGAAAGgTGCTGGTGCGCTGGAGAGCAGATGGGATGGAGCTGAGGGGCCGGGTGGTGGAGACGGAGGCGTACCTGGGGGGGGAGGACCAGGCTTCTCATTCTGCTGGGGGGCGGCGGACTGAGAGGAACACGGCCATGTTCATGAAGCCAGGGACCATCTACGTGTACCAGATATACGGCATCTATCTCTGCATGAACATCTCCAGCCAGGGGGAGGGGGCCGCCGTGCTGCTGCGCTCCCTGGAGCCCGTGCAGGGTCAGGAGGTGATGAGGGAGCTGCGTGGCACCCGGCGCAAGGAGGGGGCACGGACGCTGAAGGACCGGGAGCTCTGCAACGGCCCATCCAAGCTGTGCCAGGCGCTGGACATCAAGAGGGGGTTCGACCGGCGGGACCTGGCCTGTGACAGCGAGGTGTGGCTGGAGTGGGACCCTCAGGCACCACCGGAGCCCCAGAAAGTGGTGAGCGCCCCCCGCGTGGGCATCGACTCTGCTGGGGAATGGGCGGTCAAGCCTTTGCGATTCTACATCCAGGGACACCCCTGTGTGAGCGTGCTGGACCGGGCGGCTGAGAGGAATGGACACTCAAGTCTAGACACCGACCGCTGACCACAATGATTGCACTCAGAGGAGGGGAGCAGGAGAGAGCAGCTGGGTGCTACGGAGGAGATcaaatggaacaaaatacaGTGGAAAATGATTTTCTTATATAGAcgacaaaaaaaaaggatttggtTATTTATTAGTTGCACTACTATAATGGACAAATTCATAATACTCATTTTAATACCATTTCCCCTACTATCGCCATTTATGTTgccatatttatgtttttgtcttttaagaATTGTGTAAGAGCAGGGCATTGTTGAATGATTGTACTTACTCTGTAGTCACACCATGTGTTTATGCAGAAGATATCATCCTGGATTGAATGATGAAGGGACCAGCTGAGGAAAACCACTTAAATACAGATCTGGTATCTTCCAAGTCTTGTAGCCAGGACTGGAGAACTGGGAAACTCGTGATATGTAATGATTTGAAAGGGTTTAACATGGGCTGGCCAGCAATTACGCTCCACCTTCCCAATCTGTCTCCATATAAACTATGAAGCCACTAATCTATTCATTTATTCTTGctctaataatatatatttcccagCTAACAAATTGGCACAAGTGTAGGTCTGCATATTCACCCAGGTTATAAACCACATGTGACTGTAGAACCAGGAAAGTATCTGTGTGGTCTGCCTCCCATGACACGGCATGATTCCAGTTAAACCACTTTCACCTCACTTCTATTCTTATTCAATTCACATCACTTCTCATACGCCTGGAAGAGAAGAGCATGGCGCACCAGCAGTTAACATTGCAAAGATCATACCTTCTCTAGCAGAGGAAACAGCTGTCAACCATTAGGGCTGATAAAACAATCtcattttttgggggttgtttACATTTACTGCACATCTGCCAAGATTTGTATAATCATGCTTGAGTTCCCACATGCATTTTTcaacatatatgttttttttttcttagttttttacattaacaagcaggtttttgtttatatttttaatgtagcctGTGATTGTTATTCCTCCAAATTTCGGTTCGTTCACCGAGACAGTTGTGAACATACAGCGGTAACATCTGTAAAGCTTCTTTCTAttcgtttttttctctctctcccagtgtcATTTTGACCTGTACTGTATCTCCCACCTGTGTAGCTCTACAGAGGTCCTCGGCTAGGAGATTTCTGTTGGCTTTGCTCAGCCTGCAGATGTTCGGTACATTCCCTCTCGTCGGACGGCAGCAGATGTGCATTGCCCTGAAGCTGGCGTCCCTTTTCTGTAGTCTGAAGTGAAGGGGATCATCTGGAATGGCCATTACACTGTTATTCTTTCGGTGTGTTGTTTAATTCTAGCCTTGGTTGTATTTCACATTGGGGAATTTCAGCAGCCGTAATTGGAAGACTCGACATGGGATCGTTTATCATGATCAGGAGACTtgccttttaaattaatatattttttgggggcctccgttttaaattatttgtttcttagagtaaaaataaaattaaataaaatctttccCTGCCAAACATCTCAATATGAGTCAGTGAAAAAGATGAG
>TU145252
ACAATGATTGCACTCAGAGGAGGGGAGCAGGAGAGAGCAGCTGGGTGCTACGGAGGAGATcaaatggaacaaaatacaGTGGAAAATGATTTTCTTATATAGAcgacaaaaaaaaaggatttggtTATTTATTAGTTGCACTACTATAATGGACAAATTCATAATACTCATTTTAATACCATTTCCCCTACTATCGCCATTTATGTTgccatatttatgtttttgtcttttaagaATTGTGTAAGAGCAGGGCATTGTTGAATGATTGTACTTACTCTGTAGTCACACCATGTGTTTATGCAGAAGATATCATCCTGGATTGAATGATGAAGGGACCAGCTGAGGAAAACCACTTAAATACAGATCTGGTATCTTCCAAGTCTTGTAGCCAGGACTGGAGAACTGGGAAACTCGTGATATGTAATGATTTGAAAGGGTTTAACATGGGCTGGCCAGCAATTACGCTCCACCTTCCCAATCTGTCTCCATATAAACTATGAAGCCACTAATCTATTCATTTATTCTTGctctaataatatatatttcccagCTAACAAATTGGCACAAGTGTAGGTCTGCATATTCACCCAGGTTATAAACCACATGTGACTGTAGAACCAGGAAAGTATCTGTGTGGTCTGCCTCCCATGACACGGCATGATTCCAGTTAAACCACTTTCACCTCACTTCTATTCTTATTCAATTCACATCACTTCTCATACGCCTGGAAGAGAAGAGCATGGCGCACCAGCAGTTAACATTGCAAAGATCATACCTTCTCTAGCAGAGGAAACAGCTGTCAACCATTAGGGCTGATAAAACAATCtcattttttgggggttgtttACATTTACTGCACATCTGCCAAGATTTGTATAATCATGCTTGAGTTCCCACATGCATTTTTcaacatatatgttttttttttcttagttttttacattaacaagcaggtttttgtttatatttttaatgtagcctGTGATTGTTATTCCTCCAAATTTCGGTTCGTTCACCGAGACAGTTGTGAACATACAGCGGTAACATCTGTAAAGCTTCTTTCTAttcgtttttttctctctctcccagtgtcATTTTGACCTGTACTGTATCTCCCACCTGTGTAGCTCTACAGAGGTCCTCGGCTAGGAGATTTCTGTTGGCTTTGCTCAGCCTGCAGATGTTCGGTACATTCCCTCTCGTCGGACGGCAGCAGATGTGCATTGCCCTGAAGCTGGCGTCCCTTTTCTGTAGTCTGAAGTGAAGGGGATCATCTGGAATGGCCATTACACTGTTATTCTTTCGGTGTGTTGTTTAATTCTAGCCTTGGTTGTATTTCACATTGGGGAATTTCAGCAGCCGTAATTGGAAGACTCGACATGGGATCGTTTATCATGATCAGGAGACTtgc

Function

GO:

id name namespace
GO:0006284 base-excision repair biological_process
GO:0003905 alkylbase DNA N-glycosylase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K03652 MPG; DNA-3-methyladenine glycosylase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018368 True 2389 mRNA 0.48 3 9439657 9447144
TU145252 False 1411 lncRNA 0.40 1 9445610 9447020

Neighbor

gene id symbol gene type direction distance location
AMCG00018365 aanat2,LOC107672440,LOC107670449,LOC107596820,LOC106934031 coding upstream 79971 9354703 ~ 9359686 (+)
AMCG00018366 NA coding upstream 143752 9291332 ~ 9295905 (+)
AMCG00018359 mgrn1 coding upstream 154239 9259454 ~ 9285418 (+)
AMCG00018355 NA coding upstream 251898 9162486 ~ 9187759 (+)
AMCG00018357 NA coding upstream 283204 9156181 ~ 9156453 (+)
AMCG00018373 NA coding downstream 72523 9519667 ~ 9520987 (+)
AMCG00018371 NA coding downstream 98397 9545541 ~ 9561135 (+)
AMCG00018383 NA coding downstream 228544 9675688 ~ 9685520 (+)
AMCG00018395 NA coding downstream 243682 9690826 ~ 9691578 (+)
AMCG00018385 NA coding downstream 261835 9708979 ~ 9711300 (+)
G115990 NA non-coding upstream 2354 9437032 ~ 9437303 (+)
G115939 NA non-coding upstream 209516 9228010 ~ 9230141 (+)
G115931 NA non-coding upstream 240217 9198877 ~ 9199440 (+)
G115896 NA non-coding upstream 403074 9036330 ~ 9036583 (+)
G115875 NA non-coding upstream 569315 8868542 ~ 8870342 (+)
G116002 NA non-coding downstream 25353 9472497 ~ 9477108 (+)
G116011 NA non-coding downstream 80338 9527482 ~ 9527757 (+)
G116019 NA non-coding downstream 117582 9564726 ~ 9566691 (+)
G116020 NA non-coding downstream 121320 9568464 ~ 9569497 (+)
G116021 NA non-coding downstream 123083 9570227 ~ 9570461 (+)
AMCG00018360 f100a other upstream 194423 9239811 ~ 9245234 (+)
AMCG00018358 polr3k,rpc11 other upstream 232881 9199657 ~ 9206776 (+)
G115789 NA other upstream 744938 8693364 ~ 8694719 (+)
G115648 NA other upstream 1317486 8119778 ~ 8122171 (+)
G115590 fbxl16,LOC107685932,LOC107568165,LOC107738613,LOC107568127,LOC107690242 other upstream 1545208 7893627 ~ 7894449 (+)
AMCG00018369 NA other downstream 33808 9480952 ~ 9486146 (+)
AMCG00018374 NA other downstream 65170 9512314 ~ 9513236 (+)
AMCG00018372 LOC106517353,LOC107388090,LOC103381742,LOC101078739,LOC103481046,LOC108270924,LOC108413555 other downstream 114917 9562061 ~ 9564564 (+)
AMCG00018380 NA other downstream 159517 9606661 ~ 9612918 (+)
AMCG00018405 NA other downstream 557129 10004273 ~ 10012673 (+)

Expression


Co-expression Network