AMCG00018371


Basic Information

Item Value
gene id AMCG00018371
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 9545541 ~ 9561135 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018371
CTTGGACCTGTTGAAATCAGGCTGTGTTGTTGATTCGGCTGAATTTGACTTGGGATATCTGGAGACAGCGACCGGGACAACAGCTCAAAAGCAACAGCTGCTAGGGTCAGTGAGGATGGATAACTCTACGGACCCTGCACCCGAGGCTCAGCCCTTGAAGGGAGGTGAGGGGGAGGCCGAGGTGGAAGCTCCTCCCAAGAAGGGCCAGGGCTGCCTGAGCCGCACAGGATTCTCCAGCCTGTCCCGGTGGCGCACGGCCGCCTTCTTCCTGTCACTCTTCCTCTGCCTCACCATCGTCTTCGCATTCTCCTTCATCATTCCGTGCCCTGTCCGGCCCGTCTCACTTCGCACTTGGGAGAAGACTGTGCCCAGCTTTGcacaatatgACTTTCTGGATATCTTGGACACCAACAAAGACAAAGTCAAGGACATTCTCTTTGCTTTCAAGAACTCCATGGGCAATCTGAACACCACGTGCGCCAACCAAAGCCTGCCCTCGCCCTGCGTGTTCCTGACTGCTGTGACGGGGACGAACGGCGACCCGCTGTGGGAACGCCCACTGGCGGCAGAGCTGGACTGGGCACAGTGCGGCCTCGAGGAGCAGCAAATGCCGGTCTGCCTGGTGTCCCACTCTAACCTGCTGACGGCCCTGTACTTCCAAAACGGAACAGTTCGCTGGCAGGTGCCCCGCTCTCCGGAGCTGTCCTTCAAGCCCCCTGTCCTCAGTGTGCCAGACCTGGATGATGACGGCGTGAGCGACCTGGCGCTAGTCTCACCTGCCCAGGACGAGACGAAGGTGGTTCTTCTGTCTGGTAAGACGGGCAAACAGCTGGGCTCGGAGGCAGTGCTTGACCAGAGCCTGGTACTGGGATACCTCCTCCACAGGACCAAAGCCAGTGCTCACTACCTGCTATTCAGAAAAGAGTCGGGAGTTTATGGGCGTGCTCTGAAGACTATCGCCACTACAGCCAAGACTAAACTGACTGAAGACCCGGAGTGGAAGAAAAAGACCAATGCCAGCACGGGGAATGTGCCAGTCTATATATCCAGCTCAGTGCAGTATCTGGTGAAAGCCACCAAGGGGCGGAGTTTGGAGAACTTGTTGCTGGTGACAACTGAGGGGATGGAGATGATCGACGGACAGAGCCTGGAGACGGTCTGGAAGGTCGATACCAGCACCGTGCTCAGCGAGCCGTCTTTCGGACACTACAACAAAGATGGCGTCTATGATGTGGTGATCGAGCGCGACAGTGGGAACAATACTAAGAAGatCACAATCCTGGACGGCTTGTCGGGTGCAGTGCTGTGGGATGTGAAAATGGCATCCCAGTCCAGGAGTAGCCCCAGGCCCACCTCTGTCAACACTCTGGATCACAGATCAGTGTTCATTTTCTGGGGGAAGTTCCCCTCTGACACCAACAGCACAGATTCGCTGAGCGAGCGATTCTTGTACATGCTACACCCGTCCTACTCCAAGGTGCTCCTGGAGAAGAGCGGCACCGATGACCACATCATAGCTTTCAAAGCGGCGCTGTTCGAGAAAGGCCGTCACGCGTGTTACGTGATGCTGACCGGGCTGGGGCCGGCGGGGGACACCGGGGTGGAGGGGCAGGTGACCCTGAGCAAACACAGGCTGAAGGAGGACATGAAGAACAGCACGGTGCTGCGGCTGCCTGACGACACGGGCTCCGATAGCGATCAGGATATCAAGGAGGGCTTTGACAGGCTGCGTTTCGACAAGGATACTTAAAGGGGCCTGCAGCTACTCTGACCTCTCCACACTACTGTAGAAATGCAATGGCCCCAGCCCTGTCCCTGTCCAACAGGACTGTCCTCAAGAGGTTCTCCACCACTGACACTGACAACTGGCTTTCAGGGACTTTTCTTCTTGCATACGTGTTGGTTGGACTACACTAAACTGCAGAttcgtttttttatttaggcaacggtgtgtgtttttactgtCTGACAGCAAGCCTACCTGATCGGTTACACAGGAGCAGGGGGAAGACACCTTGGGATGCTAGTCAACACTAAGGGAccatgtggagaaaaaaaaaacaattgtccAAGAGAAAActggcaacaacaacaagaatgcCACCAATTTAAAAGCAGGAAACAAAAACCAGGACAAGCTTGCAAGTGTACACGCTGACATTTAAATACCCATTCTGTTCTGTAGAGCAGAGAATAAAAATTAACCGGCAAAAACGAAGTCATACGGTGAATGTTGAGCAGCACAGTGTTTGGAAACAGAGCTTTGAAGAAAAAGTGTGGAGGCACAGACGAGCTCTCTGGCAGCAGGAGCCGCAATCCCCAAGAGAAGCACAAACCCCAGCAGGACTGCAGACGAACAACAAACAGCATCCATTAGCTGCCTGTAAATCTTTTTAACAACACATCTACAAGTCCAAGCAGCTCCCTGAGACAGCAGGACCGCGGCCTCCTTCTGCTGGGCATGAACCTCTGTCTACAAACCAAAgatcagttaaaataaaaaaaataaatcctagaCTTTCTATACGTTTCTTCCAAACAGGAAGCCTTAATTTGGTTGTCTATGCAGTCTGGATGGGAAAGTCATTCTCCAGTATTGTCAgaggagacttttttttttttaaccacctTCTTCCTCAGGGGAATAAAATGACCTTTACCCTTTACGACCGCTCCCAGCTGCCAGGCACTTGTGACACGTCTGGGCCTACTGTATCAGTGTGGGTTTGCTTGGGCCGTAATcccaatgtatattttatttttcttatggtTAATCTCAACTATGTCTGCACACAGATTAACAATCAAACACAAACTAGACCACCCAGAAATCTGTTATGCATTACAGCCCGGTTTGGGAGTCCTGTAAAGGGTCGGGGGCTACTGGGAGACCAGCTCtattctgtccctctctgtctatATGCTTTGTGTCTAGGGAAGTGCAGGGACTGCATAGGACACACACATCGGGCTCTCAAACTGGATTCACCTGAACAGGGGAGAGCCCAGCAGGGCCTGTGGAATATGCACAAGAAAGCCACTAATGCTAAAATGCACACTGCGTTGGGATCGATACGCAGTAGCAAAGACTTACATTATAGCATGGCCGTGTGCTGAGGCAAGATCATCTTTGTGCAATATCAAAACACAGAGGAATCGAGAAAGATGCAGGCGAACATCAAGCCCAAAAGATGCTCATCTGATAATTGGTATCTTGGCAAGGGATGATGTTATATTAGGCTTTCTCAGGTACATTTTGATTTGCTTGGGATGTGTgcatgacatttgttttcaagataAAAATGGGTATATAGTTCTGCTATTAGAAATGTGTTGGCTGAAAGGTTGATTATACAGTTATGATGCAGAAACGGgttgatttattataaatatacagtctGGTATAAATGAATcctcatttcatttatttaaaagaaattggctatatttaaaaccttttagGTCTGTAAAAAGCAAAGCTTCAAATATGCTGCATGAGATGAGCTGTGTTCAGTTGAATATAACTACATGTATATTGCAAATCAACGTTGAAAAGAGGACGGGTTGTTAAATTGTTTGGTTTCCATGTGTCAGACTTCAGTACAGTTATTTTCATTCTGGAAGAATGATTTGTCACTAGTGtttttgaaaagcttttaaatatCTATTATTGTAAGAAGACTAAGACATGAATATTACAAATCATAACTGACCCGCTGTTGAATCGTAAATCATAAACTGGTACCCGGTTGTGTTGTCTTTTACTGTATTGTTAAAAGCCTCGTTCTCCTgcttaaaactgaaaaagcaatagggcacaagtttgtaatttgcaaagcGGGAGTAGGTCAGATTGTGATTCGGTCAAAGTCATATTGTTTAACATTGctaaaacacagcacatttctgGAGGCACTACTGAAATGCAAgagtttgaatacatttcttaaagcaTTAAAACTCTTTATCTGTAGTAAATGTaaactgttacattttaaatataaaatcctTATTCTTGGAACCTTCTGCCTGGGAAGATGGATACAAACACTTGGTTGCTGCTGTAGCTACCAATCTTCCTAGCAACATTGTATTGACCTGCAGCACCTGATCACACGGGCTGCTACACTGATCCTGCTGTGCCTCGTCTGCCTCTGGTATTACTACAGCAATATTCTGAGTTCAATATTGCACATGtaaattattactatttctTCTGGATAACGTAAAATACACCTACTTCAAGGGGAGCATcagagtatttaaaatatattgtcttaattctgaaataaaatgttataattgtaaatata

Function

GO: NA

KEGG:

id description
K17258 ITFG3; integrin alpha FG-GAP repeat containing protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018371 True 4313 mRNA 0.47 12 9545541 9561135

Neighbor

gene id symbol gene type direction distance location
AMCG00018373 NA coding upstream 24554 9519667 ~ 9520987 (+)
AMCG00018365 aanat2,LOC107672440,LOC107670449,LOC107596820,LOC106934031 coding upstream 185855 9354703 ~ 9359686 (+)
AMCG00018366 NA coding upstream 249636 9291332 ~ 9295905 (+)
AMCG00018359 mgrn1 coding upstream 260123 9259454 ~ 9285418 (+)
AMCG00018355 NA coding upstream 357782 9162486 ~ 9187759 (+)
AMCG00018383 NA coding downstream 114553 9675688 ~ 9685520 (+)
AMCG00018395 NA coding downstream 129691 9690826 ~ 9691578 (+)
AMCG00018385 NA coding downstream 147844 9708979 ~ 9711300 (+)
AMCG00018384 NA coding downstream 164647 9725782 ~ 9729487 (+)
AMCG00018388 NA coding downstream 173076 9734211 ~ 9740498 (+)
G116011 NA non-coding upstream 17784 9527482 ~ 9527757 (+)
G116002 NA non-coding upstream 68433 9472497 ~ 9477108 (+)
G115990 NA non-coding upstream 108238 9437032 ~ 9437303 (+)
G115939 NA non-coding upstream 315400 9228010 ~ 9230141 (+)
G115931 NA non-coding upstream 346101 9198877 ~ 9199440 (+)
G116019 NA non-coding downstream 3591 9564726 ~ 9566691 (+)
G116020 NA non-coding downstream 7329 9568464 ~ 9569497 (+)
G116021 NA non-coding downstream 9092 9570227 ~ 9570461 (+)
G116022 NA non-coding downstream 10115 9571250 ~ 9571501 (+)
G116024 NA non-coding downstream 12847 9573982 ~ 9575102 (+)
AMCG00018374 NA other upstream 32305 9512314 ~ 9513236 (+)
AMCG00018369 NA other upstream 59395 9480952 ~ 9486146 (+)
AMCG00018368 NA other upstream 98397 9439657 ~ 9447144 (+)
AMCG00018360 f100a other upstream 300307 9239811 ~ 9245234 (+)
AMCG00018358 polr3k,rpc11 other upstream 338765 9199657 ~ 9206776 (+)
AMCG00018372 LOC106517353,LOC107388090,LOC103381742,LOC101078739,LOC103481046,LOC108270924,LOC108413555 other downstream 926 9562061 ~ 9564564 (+)
AMCG00018380 NA other downstream 45526 9606661 ~ 9612918 (+)
AMCG00018405 NA other downstream 443138 10004273 ~ 10012673 (+)
AMCG00018406 NA other downstream 483317 10044452 ~ 10046523 (+)
AMCG00018422 NA other downstream 696670 10257805 ~ 10292261 (+)

Expression


Co-expression Network