AMCG00018373


Basic Information

Item Value
gene id AMCG00018373
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 9519667 ~ 9520987 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018373
ATGGTGCAGTGGACCGACGACGAGCGCAAAGCCATCGCCTCCGTCTGGAGCAAGGTTGATGTGGAAAGCACCGGGCACCAGGCCTTGGTCAGGCTCCTGATCGTGTACCCCTGGACTCAGCGCTACTTCAGCAGCTTTGGAAACCTGTCCAGTAGCTCCGCTATCATGGGAAACCCCAAAGTCAAGAGCCATGGCAAGACCGTGCTGACCGCGCTGGGAGACGCCGTGAACAACCTGGACAACATCAAAGAGACCTACAGCAAACTGAGCGAGCTGCACTCCGAGAAGCTGCATGTGGACCCCGAGAACTTCAGGCTCCTTGGTGAGACTCTGATCATCGTCCTCGCAGGGAAGTTGGGGGCAGAATTCACCCCCGCAGTCCAGGCTGCCTGGCAGAAGCTGTTGGGCGTTGTCATCTCCGCCCTGGGCAGACAGTACCACTAA

Function

GO:

id name namespace
GO:0015671 oxygen transport biological_process
GO:0005833 hemoglobin complex cellular_component
GO:0005506 iron ion binding molecular_function
GO:0019825 oxygen binding molecular_function
GO:0005344 oxygen carrier activity molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K13825 HBE; hemoglobin subunit epsilon

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018373 True 444 mRNA 0.59 3 9519667 9520987

Neighbor

gene id symbol gene type direction distance location
AMCG00018365 aanat2,LOC107672440,LOC107670449,LOC107596820,LOC106934031 coding upstream 159981 9354703 ~ 9359686 (+)
AMCG00018366 NA coding upstream 223762 9291332 ~ 9295905 (+)
AMCG00018359 mgrn1 coding upstream 234249 9259454 ~ 9285418 (+)
AMCG00018355 NA coding upstream 331908 9162486 ~ 9187759 (+)
AMCG00018357 NA coding upstream 363214 9156181 ~ 9156453 (+)
AMCG00018371 NA coding downstream 24554 9545541 ~ 9561135 (+)
AMCG00018383 NA coding downstream 154701 9675688 ~ 9685520 (+)
AMCG00018395 NA coding downstream 169839 9690826 ~ 9691578 (+)
AMCG00018385 NA coding downstream 187992 9708979 ~ 9711300 (+)
AMCG00018384 NA coding downstream 204795 9725782 ~ 9729487 (+)
G116002 NA non-coding upstream 42559 9472497 ~ 9477108 (+)
G115990 NA non-coding upstream 82364 9437032 ~ 9437303 (+)
G115939 NA non-coding upstream 289526 9228010 ~ 9230141 (+)
G115931 NA non-coding upstream 320227 9198877 ~ 9199440 (+)
G115896 NA non-coding upstream 483084 9036330 ~ 9036583 (+)
G116011 NA non-coding downstream 6495 9527482 ~ 9527757 (+)
G116019 NA non-coding downstream 43739 9564726 ~ 9566691 (+)
G116020 NA non-coding downstream 47477 9568464 ~ 9569497 (+)
G116021 NA non-coding downstream 49240 9570227 ~ 9570461 (+)
G116022 NA non-coding downstream 50263 9571250 ~ 9571501 (+)
AMCG00018374 NA other upstream 6431 9512314 ~ 9513236 (+)
AMCG00018369 NA other upstream 33521 9480952 ~ 9486146 (+)
AMCG00018368 NA other upstream 72523 9439657 ~ 9447144 (+)
AMCG00018360 f100a other upstream 274433 9239811 ~ 9245234 (+)
AMCG00018358 polr3k,rpc11 other upstream 312891 9199657 ~ 9206776 (+)
AMCG00018372 LOC106517353,LOC107388090,LOC103381742,LOC101078739,LOC103481046,LOC108270924,LOC108413555 other downstream 41074 9562061 ~ 9564564 (+)
AMCG00018380 NA other downstream 85674 9606661 ~ 9612918 (+)
AMCG00018405 NA other downstream 483286 10004273 ~ 10012673 (+)
AMCG00018406 NA other downstream 523465 10044452 ~ 10046523 (+)
AMCG00018422 NA other downstream 736818 10257805 ~ 10292261 (+)

Expression


Co-expression Network