AMCG00018386 (si:ch211-256e16.3,LOC106601741,LOC105026145,LOC107674048,LOC107552129,LOC108412900,LOC107717492)


Basic Information

Item Value
gene id AMCG00018386
gene name si:ch211-256e16.3,LOC106601741,LOC105026145,LOC107674048,LOC107552129,LOC108412900,LOC107717492
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 9768768 ~ 9774480 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018386
ATGGAAGGAGGCCGCTACTTTAGATGGGAGTGCTATGGGAAGATGGATGTCATGGCAGCCGCCAACGCCGCCCCTGTGtccatgtctgtgtctgtccccTCCCCCCCCGACGCCCCTCTGACAGTgcccacctccccctcctccgAGGACCCCGGCTTCCCACTAGCGCCCCTGGACAGTGAGGATTACGTGTTCGTGGAGGCCCGGCACTCCAACAAGGTGCTGGAGGGCCTGAACAGCCTGCGACTCAACAACGCCTTCTGTGATGTCATCTTGTGCTGTGGGGGCCAGGAGTTCCCCTGCCACCGCATCGTGCTGGCCTCCTTCAGCTCCTATTTCCAGGCCATGTTCTCCACAGACCTGATGGAGTCCCGGCAGGAGCGGGTGGCCATCAACGGGGTGGAGCCACAGATGATCGGCGTGCTGGTGAACTACGCCTACACGGCCGAGGTGGTCATCACCAAGGCCAACGTGCAGGCCCTTCTGGCCGCTGCCAACCTGCTGGACATCATGGCCGTGCGTGAGGCCTGCTGCAAGTTCATGGAGCGCCAGATGGATGAGATGAACTGCGTGGGCATCCACTGCTTCGCCGAGGCGCACTCGTGCCGCGAACTGGAGTGCCGCAGCATGGACTACATCCTGCAGCACTTCAGCACTGTTTGTCGCCAGGAGGAGTTCCTGTCCCTGTGTGCTGACAAGCTGACGGAGATCATCGCCAGCGACCACCTCAACGTACCCAAGGAAGAGACCGTGTTCGAGGCTGCCATGCTGTGGCTGGAGAAGAGTGCCCCCCGCAAGCAGAGCTTCGAAAAGGTGCTGGAGCACATCCGGCTGCCCCTCATCAGCCCCTACTACATCCACGATGTCATCGAGTCCCTGGAGGTGGTGCGGGAGTCCCTGCAATGCCAGCGGCTCATCTCCGAGGCCAAGGACTACCTGCTGCTGCAGGACCGGCGCGGGGAACTCTTTGGACCGCGCACCCGGCCCCGCCGCTCCACTGGCACAGCGGAGGTGATCGTGACGGTTGGGGGGGAGGATGACAAAGTGGTCCTGCGCAGCGTGGAGAGCTTTGACCCCGTGACCTGCCAGTGGAAGTCACTGGCCTGCCTGCCCTTCGCTGTCAGCAAACACGGCCTGGTGGTGTCAGGCAACACACTGTACTTGGCCGGGGGGGAGTTCCCCGATGGCTCGGCGAGTCGAGAGATGTGGCGCTATGACCCCTGCTTCGACTCCTGGTTGGAGATGGCCCCCATGAATGTTGCACGCTCCGAGCTGGGCCTGGCCATGCTGGACGGCTTCGTGTTTGCAGTGGGTGGCTGGGAGGGCCACTCCCGACTGGACTCGGTGGAATGCTACAACCCTCACACCAACACCTGGCACTTTGTGGAATCTATGAAGATGGCGGTGACCAGCCCTGCGGTGGTGGCTCTGGATGGGCTGCTGTACGTCACGGGGGGAGCTGTTCTGGAGGATGGCGATGGCATGGACCTGGCTCAGGTGTACAACCCCAAAGCCTGCTTGTGGACGGAGGTGGCACCCATGCAGATCGCCCGCTCTGGCTCGGCAGCCTGCATCCTGAGGGGCAAGATCTACGTCATCGGTGGCTGGCATGCCTCCACGGAGAACACGGACAAGGTTGAGTGCTACGAACCCAAGACCAACCAATGGACCATGTGTGCACCAATGAAGGAGCGGCGATACCGGCCTGGTGTGGCCGTGGTGGATGGAAAGATCTATGTgctgggaggagaggagggctgggacagGTACCACGACACCATCGAGCGGTACTGCGAGGAGACGGACAGCTGGGAGATCGTGGGTGAGATGCCAACTAGTCGTAGCTGGCTGAGCTGCGTGTCTCTGCAGGTGAGGAAAGATGCCCGCAGCGCCAGCCGCCCAGAAACCGCCTCCGAAAGGGAGTTTCCCGTGGACTGA

Function

NR:

description
PREDICTED: kelch-like protein 20

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018386 True 1938 mRNA 0.62 11 9768768 9774480

Neighbor

gene id symbol gene type direction distance location
AMCG00018389 NA coding upstream 8141 9755746 ~ 9760627 (+)
AMCG00018387 NA coding upstream 24100 9741599 ~ 9744668 (+)
AMCG00018388 NA coding upstream 28270 9734211 ~ 9740498 (+)
AMCG00018384 NA coding upstream 39281 9725782 ~ 9729487 (+)
AMCG00018385 NA coding upstream 57468 9708979 ~ 9711300 (+)
AMCG00018402 NA coding downstream 7120 9781600 ~ 9788774 (+)
AMCG00018399 c16orf52.L,c17h16orf52,C20H16orf52,LOC108258941,LOC106518731,LOC107675623 coding downstream 51006 9825486 ~ 9833544 (+)
AMCG00018398 NA coding downstream 72421 9846901 ~ 9880691 (+)
AMCG00018400 NA coding downstream 107878 9882358 ~ 9895427 (+)
AMCG00018401 NA coding downstream 125482 9899962 ~ 9925946 (+)
G116088 NA non-coding upstream 21381 9689765 ~ 9747387 (+)
G116035 dnah3,LOC107561106 non-coding upstream 149863 9618670 ~ 9618905 (+)
G116034 dnah3,LOC108263105 non-coding upstream 154987 9612982 ~ 9613781 (+)
G116028 NA non-coding upstream 189671 9578837 ~ 9579097 (+)
G116027 NA non-coding upstream 191168 9577396 ~ 9577600 (+)
G116199 NA non-coding downstream 258073 10032553 ~ 10041833 (+)
G116214 NA non-coding downstream 345697 10120177 ~ 10121558 (+)
G116264 NA non-coding downstream 440907 10215387 ~ 10216789 (+)
G116300 NA non-coding downstream 570255 10344735 ~ 10345082 (+)
G116301 NA non-coding downstream 576484 10350964 ~ 10351562 (+)
AMCG00018380 NA other upstream 155850 9606661 ~ 9612918 (+)
AMCG00018372 LOC106517353,LOC107388090,LOC103381742,LOC101078739,LOC103481046,LOC108270924,LOC108413555 other upstream 204204 9562061 ~ 9564564 (+)
AMCG00018374 NA other upstream 255532 9512314 ~ 9513236 (+)
AMCG00018369 NA other upstream 282622 9480952 ~ 9486146 (+)
AMCG00018368 NA other upstream 321624 9439657 ~ 9447144 (+)
AMCG00018405 NA other downstream 229793 10004273 ~ 10012673 (+)
AMCG00018406 NA other downstream 269972 10044452 ~ 10046523 (+)
AMCG00018422 NA other downstream 483325 10257805 ~ 10292261 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other downstream 1477879 11252359 ~ 11256165 (+)
G116585 rbbp6,LOC107689611 other downstream 2191767 11966247 ~ 11970778 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000112_02213671_02227376 NA coding CI01000112 null 2213300 ~ 2227643 (-)