AMCG00018397 (polr3e,LOC106589521)


Basic Information

Item Value
gene id AMCG00018397
gene name polr3e,LOC106589521
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 9926956 ~ 9943301 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018397
GCCTCGGAGCGGCTCCTCCCCACGTGTCTGGGAAACAGCAGCAACATGGCAGCGGCCTGAGTCTCCAGCCACCGCACAGAAACCCGCACGACCGACCGACAGGAGCCAACGGGCGAGCCGGCGGAGGGACAACCCTACCGTCATTCCGCATTTAGTGAAGGTGTGCACACTGAGCCTAGAGGCCGAGCGCCCCTGAACATAGCTGCCAGTGTGTCCCCTCAGTATGGCCAGTGAGGAGGATGACCCCATTATACAGGAGATTGACGTGTACCTGGCCAAAAGCCTTGCTGACAAGCTCTACCTGTTCCAGTATCCAGTGCGTCCTGCATCAATGACTTATGATGACGTGGCCCATTTATCGGCCAAAATCAAGCCCAAGCAGCAGAAGGTGGAGTTGGAGATGACCCTGGACACCATGAGCCCCAACTACTGCCGCAGTAAAGGGGAGCAGATTGCCCTCAACGTGGACGGCACCACCTCCGAGGACAGCAACACCTACTCCACgaAGCTGATGGACAAGCAGACGTTCACGTCAATCCAGGCCACCACCAACACTTCCCGCTACGCTGCTGCCGTCTTCCGCAAGGGTGAGCTACACCTGACCCCCCTGCAGGGCATCCTCCAGATGCGCCCCAGCTTCTCCTACCTGGACAAGGCCGACAGCAAGCACCGCGAGAGGGAGGCAGCCAACGAGGGTGGAGACTCCTCCCAGGACGAGGCCGAGGAGGACATCAAGCAGATCACGGTGCGCTTCTCCCGGCCCGAAAGTGAACAGGCCCGGCAACGGCGCTACCAGTCCTATGAGTTCCTGCAGAAGAAACAGAACGAGGAGCCCTGGGTCCACTTGCACTACTATGGACTGAAGGACGGGCGCTCTGAGCACGAGAGGCAATACCTTTTCTGCCAGTGCATGGGCGTGACAGAGAACACGGAGCTGGTGAAGACACCGAGcgAGTACCTGGCGATGCTCATGCCTCCTGCAGTGAAAGAGGAAGTTGCCAAGCCCGTCACTCCCAGCAATGTCCTGTCCATGGCCCAGCTGAGGACCCTGCCACTGGGGGACCAGGTGAAGACTTTAATGAAGAACGTGAAGGTTATGCCTTTTGCCAACCTTATGGGGCTGCTGACTCCTGGCACAGACTCCACTGCAGTTCTGCGTTGTGTCCAGCAGGTGGCGATGTTGGTGCAGGGGAACTGGGTAGTGAAGAGTGACGTGCTCTATCCCAAGGACACCTGCAGTCCGCACAGTGGCGTCCCGGCAGAGGTGCTGTGCCGAGGGCGGGACTTCctgATGTGGAAGTTCACTCGGGAGCGCTGTGTGGTGCGGAAGGAGGTGGCAGCCATCGTGAAGCTGCCGGCGGAGGACGTGAAGGACTTCCTGGAGCAGATGGCAGTGCCCCGTGTGAACCGCGGCTGGGAGTTCTTGCTGCCCAGCGACACCGACTTCGTCAGGAAGCACCCCGATGTGGCGCAGCGGCAGCACATGCTCTGGCTGGGCATGCAAGCCAAGCTGGAGAAAGTGTTCCATCTCTCCAAAGAAGACATGATGCCAAAGAAGAAGGATTCTGCGCCAGGTGAGTGCCATGTCGGGCAGTCCCGTCACTGGGTAGGGCCTATGGAGGTGAAAGGTCCGCAGCGCAGGCTGAGGGTGAATGTGAGTGCAGGCCAGCACGCTCCACTGGACTCTCTGAACGAATGCAATCATACAGTAGAGATTATAACCCAGAGCTCAGTGGGCCACTCACAGGTGCTGTGCAGAGGCATGCAGTGGTGTCTGacagatgtgtgtgttgcaggtgtgGTGCTGGTGAGCGGGGAGAAACGGTTGCGGATGGCCAAGGACCGGGCAAGGGAGGGCAGACCAGCGCTGGAGAAGGACCTGGAGCGGCAGCGTGCGGTGGGCAGGGATTCCTCGGGGGCAGCAGTGCAGGTCAAAGAGGAGCCGCTGAGCGACGGCGAGGAGCCCATGGACATCTCCCTCACCGAGACGCTGAAGAACGGGGCCGTGAACGGGCTGCCCCACTCAGACGACAGCTCGCGTGACTCCCTCAATGGCCACAGCCCCTCCTGCAGGCCTGCCTCCCCCTCCCAGGAGCTCAGGGACTTTGTGAGCGCCACCTTCAGGAAGCACTATGTCCTGACACTCAGCGAGCTCAAGCGCCTCTTCAACCTGCACCTGGCCAGCCTGCCACCCGGGCACAGCCTCTTCGGGGGCATCTCAGACCGCCTGCTGCAAGATGCCATTCTCCACAGCCGGTGCCGCCAGATTATGGTGCCTTTCCCCCCTCAGAGCTCGGCTGCGGCGGACGAACAGAAGGTGTTTGCGGTGTGGGAGACGGGGGACTCCTTTGACAAGCACCGCCAGCTGCTGTTCGAGCTGTTCATGAAGAACTATCGCGTGAGGAGGAATGTGGTCCAGAGCCGCCTCAACCAGGAGTTCGGGGAAAGTGTAACCAAGGCTGACCTGGACAAGCTGCTCAAGGAGTGCTGTATAAGCTATGCAGGGATGTGGTACCTGAAGGGTACAGTGCAGTCCTGACAGCAGAGCCTGGAGGTGGGGGTCCATCCGCTAATCATCTCCTCCACCGCCCAGTGGGACGGGCTCTACAGAACACATGGACCAATCACTGCCCTTCCGCCCACAGACTGCGGGGCAGGGGTTGGAGCATAGAGGTGCCATTCATTCACTCGGACCATTTccatttgttaatttactgaGGTCACCAAGTTTGGGATGGAATGAGATAACAAGCAGGGTGGAGGGTTTGGGGGGGTATAGACTTTTTGACGGCTCGAGATGTCTTTAGGCAGAACAGAGACAGGACAGATTGACAAGGAATTTTACAATTTAGAAATGCCTGGGGATGGCAGAATACTGCAAGTGGTGCttgatttttctcttttggAGGGGCGGGGGTGGGGAAGTTGTATCACTCTGTCCTTTTAAATTAGACTTTTGTTAgatcttcattttctttcttttttattttaaagaaaaggaaggggaaataaaagcacattaaagACAAGTCCATTACAGGGAAGGGTTCTGCAGACTGTTGAGACGTAGGGGAGTGTTTTATGGGCGGTAGTGGAAAGGGCCAGGTTATCAGTGGCTACTTTGTGTTACAGACTAAATGAGATCCTGTGTGCAGTAGaaattagggctctggacttgtaAGCGGCTGGTGGATTCAAATCCCAGTAGACACGGCTGTCAAAGTGAACTTCCAGTGAAGACACGACTGTCAGTGGAAAACCATAGAAGTAATCTTTGATAGACGTCTAtccaatttaaaagtaattgaatCAATGGAAATGAGAACAAGCCTTGTCCACCCCTACCCcccattttaaaattgcaccTTCCACTTTCAGAGAAGTCGATGTGAAAGGGAAGTCCTGATTGGAATGGgtgtttttgtggtgtttttttttccttcaacatGATTTTGACTCAGCTTGAAAGTGAGTGAGGATGTCTGTTATCAGGAATCACTTTGTCATGAGTTTGACTGAATCCTGCGGTCTGGGTATCATAATCACTACTGCATGgaatatgcaaaaaaatataaatatcaatacaaatgaACCAATAGACTTGGATGCTGGATGACTTAATGAGAAACCATGACTGACAATCCTATGCACAAATGCTGGAAAAATAGgcaaggatttattttaaattgcattctttatgatttaattttcctGGTCatagacatttcagtttttttatggAACTTTATTTAAAGCTGCTAGTGTTAAAAGATCAATATGGATCCCAAGGGAAGATCAATTCAGGAGGCCAGTTTGTGACATGACCCGCAGAGCAGTGTTTGGGATAGTGGCAGAGCAGTGAGACCCAGGCCTATGCTAAGAAGGGAAGGGAAGAAATTAGATGCAACTGAGGATATAATTTTCTGAGCCAGAACATGAAACCTTCCCCCCGACCCACTCCACCTGTAATCTGAACTGGGAGTGAGCAGGGGAAGGGGCTCAGAGTGAAGTGCATTATCACAATCTAGTGACCCcagtgcaatgaaaataaaaaatggatgaGCTGAGAAGCCAGAAAACAGCATTCTTACTGTTCAGATCTGTCCCCCATTCTTTCTGCAGCAGGGGTCGCAAACTCAAGATCTGAAGGTCCCCCTAGTTTACTTATTTTCCCCCTCCTTTAGCTTGTCGTTTCTCAGCCCCTCTAATGGTCACTTGATTAATGCGATGCTCTCGACATTCTCGTCCATGGTCCAGTCCGCTGAAGGTTGCAGGACTGCACATGATCTACACTCTATacaggaggagggagggagaggtgtGGCGGGGGCATGTGTCCATGTCATCAACCGGAGCAAGGATTAAACCAGGGGTGTGCAATACTGGTCCAGGAGGGCCGCTGTGTCGTCAGATTATAACTCTGACGAGCTTATTTGACTCCTCAGTGATTTGGGTAAATTGGTGTCAGCTTCTCTCTGTAGTTAAAGGTGTTCCTGCTGGGCCAGGTTCATGCCCCCATGGATTCAGTGTTTGAGACTTCAGATTGAGCATTAGCCCCTGTTCTCAGAGGTGCTCAGTGATGCAGATCCACAGTTCAGTGCCTCTGCTATCACCTAGGGGTCAGATTCTGAAACCTATGCTAGGCTGCTAAAAATAATGGAACTGAAGAAATGAAAACGAAGTAGAAGGCTAGCAAGTTGCTGGTTTGAGTCTGGCCTCTGCCACTGACCCACTGTGAACATCCTCTTGTTTTGGGCTTGATTTGAGTCCTGATGCAACTTGCTGCAGTTGCTGATGGATAATTCTCTTTGGATAAAAGCGGCTGCAGTTTTACACATAGCATATCTAAATATAATTGCACCACATTTTTTCCACCATTTCAATAACCGAGATGGATTCTACAATTAACATCCTGCCTTGCTTTTGAATTATGGCTCTATGAAAGGAGTAGGGGGGAGCCATTGGGCTTCTGCTAAGTGGTGGACAGGCTTTGTGAAACTGACCTCTTGGTAatggttatttttaaatcaggaGATACTGGACAGGAAGCAGTACctgttatgtgtatttatttatttatttagtttttattcagACATCAGCGCAGGGGCTCTCCTCAAACAACCCAGAGCTCCCTTCTGCTAGGGGGGATATTTCACACCAGGCTGGAAATGACTCGGCCATATGCTTGGCCTGATCCCTAAAACAATCGGTAGCCTGGTTGGTGTGGCTTCCCATACACAATGCAATGGGCAGGGAGCCATGCTGGAGCCCCTGGGTCTCAGCTCTGTGTTCCCTGAGGGCCCTGATGTGGAAGTACCTCTGCATCTCACTCGGACAGTTAGTTAGCTTTTCACAATGATCGCAGGCTGTTCCGTTGGAACTCTGACCTCTGAAGAATGTTTTTACTTGGAAAAGTTTTTTTGgttctgatttttttaaattttgttttcgttctatttttgttgtggttttgttactttttgtaTGCATCTGTTTTCCTTAACCTGCTATGgacttatttataataaaaaataataatttggaacaTGATACAAAAGTATATGAACCTGCTCTAAATAAAGACATTCTTTGAAGCTTTACTGATACCTTCAATTACACATACGAGGTGATGTTTGTGAACGGGGCCTACAAACAGTCCTGTATCTCAGTTCTCTATTTCCCTTCACTTGTCAACTTGTTACAGCAGGGCCTCACACAGTTGCTGTTTCTAACACAGATGTCTTCAAATAAAAC

Function

symbol description
polr3e Predicted to act upstream of or within transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of RNA polymerase III complex. Orthologous to human POLR3E (RNA polymerase III subunit E).

NR:

description
PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like

GO: NA

KEGG:

id description
K14721 RPC5, POLR3E; DNA-directed RNA polymerase III subunit RPC5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018397 True 5757 mRNA 0.51 20 9926956 9943301

Neighbor

gene id symbol gene type direction distance location
AMCG00018401 NA coding upstream 1010 9899962 ~ 9925946 (+)
AMCG00018400 NA coding upstream 31529 9882358 ~ 9895427 (+)
AMCG00018398 NA coding upstream 46265 9846901 ~ 9880691 (+)
AMCG00018399 c16orf52.L,c17h16orf52,C20H16orf52,LOC108258941,LOC106518731,LOC107675623 coding upstream 93412 9825486 ~ 9833544 (+)
AMCG00018402 NA coding upstream 138182 9781600 ~ 9788774 (+)
AMCG00018396 NA coding downstream 16920 9960221 ~ 9968405 (+)
AMCG00018407 NA coding downstream 72645 10015946 ~ 10025490 (+)
AMCG00018415 NA coding downstream 146121 10089422 ~ 10094644 (+)
AMCG00018412 LOC108437157,LOC107710695,LOC102303741,LOC101486233 coding downstream 157623 10100924 ~ 10120054 (+)
AMCG00018413 NA coding downstream 194679 10137980 ~ 10150773 (+)
G116088 NA non-coding upstream 179569 9689765 ~ 9747387 (+)
G116035 dnah3,LOC107561106 non-coding upstream 308051 9618670 ~ 9618905 (+)
G116034 dnah3,LOC108263105 non-coding upstream 313175 9612982 ~ 9613781 (+)
G116028 NA non-coding upstream 347859 9578837 ~ 9579097 (+)
G116027 NA non-coding upstream 349356 9577396 ~ 9577600 (+)
G116199 NA non-coding downstream 89252 10032553 ~ 10041833 (+)
G116214 NA non-coding downstream 176876 10120177 ~ 10121558 (+)
G116264 NA non-coding downstream 272086 10215387 ~ 10216789 (+)
G116300 NA non-coding downstream 401434 10344735 ~ 10345082 (+)
G116301 NA non-coding downstream 407663 10350964 ~ 10351562 (+)
AMCG00018380 NA other upstream 314038 9606661 ~ 9612918 (+)
AMCG00018372 LOC106517353,LOC107388090,LOC103381742,LOC101078739,LOC103481046,LOC108270924,LOC108413555 other upstream 362392 9562061 ~ 9564564 (+)
AMCG00018374 NA other upstream 413720 9512314 ~ 9513236 (+)
AMCG00018369 NA other upstream 440810 9480952 ~ 9486146 (+)
AMCG00018368 NA other upstream 479812 9439657 ~ 9447144 (+)
AMCG00018405 NA other downstream 60972 10004273 ~ 10012673 (+)
AMCG00018406 NA other downstream 101151 10044452 ~ 10046523 (+)
AMCG00018422 NA other downstream 314504 10257805 ~ 10292261 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other downstream 1309058 11252359 ~ 11256165 (+)
G116585 rbbp6,LOC107689611 other downstream 2022946 11966247 ~ 11970778 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000047_06993737_07007548 POLR3E coding CI01000047 null 6993722 ~ 7007548 (-)