AMCG00018399 (c16orf52.L,c17h16orf52,C20H16orf52,LOC108258941,LOC106518731,LOC107675623)


Basic Information

Item Value
gene id AMCG00018399
gene name c16orf52.L,c17h16orf52,C20H16orf52,LOC108258941,LOC106518731,LOC107675623
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 9825486 ~ 9833544 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018399
gcGCTCACAGTGGGCCTGGTGCGGCAGTGTCAGACAATCCACGGACGTGACAGGACCTGCATCCCGCCACGGCTCCCCCCAGAATGGGTCACCAcgctgttttttattattatgggcATCATATCCTTGACTGTCACATGTGGCTTGCTAGTGGCCTCACACTGGCGAAGGGAAGCCACAAAGTATGCACGCTGGATAGCATTCACTGGAAtGATCTTGTTCTGCATGGCAGCCCTGATATTTCCAATAGGATTTTACATCAGTGAAGTGGGAGGACAGCCATATAAGTTACCTAACAACACAGTGGTTGGGTCATCGTATGTACTATTTGTATTATCCATTTTTTTCACAATAGTGGGCCTGCTGTTTGCTGGAAAAGTCTGCTTGCCTGGC

Function

NR:

description
PREDICTED: uncharacterized protein C16orf52 homolog B

GO: NA

KEGG:

id description
K23663 MOSMO; modulator of smoothened protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018399 True 393 mRNA 0.49 2 9825486 9833544

Neighbor

gene id symbol gene type direction distance location
AMCG00018402 NA coding upstream 36712 9781600 ~ 9788774 (+)
AMCG00018386 si:ch211-256e16.3,LOC106601741,LOC105026145,LOC107674048,LOC107552129,LOC108412900,LOC107717492 coding upstream 51006 9768768 ~ 9774480 (+)
AMCG00018389 NA coding upstream 64859 9755746 ~ 9760627 (+)
AMCG00018387 NA coding upstream 80818 9741599 ~ 9744668 (+)
AMCG00018388 NA coding upstream 84988 9734211 ~ 9740498 (+)
AMCG00018398 NA coding downstream 13357 9846901 ~ 9880691 (+)
AMCG00018400 NA coding downstream 48814 9882358 ~ 9895427 (+)
AMCG00018401 NA coding downstream 66418 9899962 ~ 9925946 (+)
AMCG00018397 polr3e,LOC106589521 coding downstream 93412 9926956 ~ 9943301 (+)
AMCG00018396 NA coding downstream 126677 9960221 ~ 9968405 (+)
G116088 NA non-coding upstream 78099 9689765 ~ 9747387 (+)
G116035 dnah3,LOC107561106 non-coding upstream 206581 9618670 ~ 9618905 (+)
G116034 dnah3,LOC108263105 non-coding upstream 211705 9612982 ~ 9613781 (+)
G116028 NA non-coding upstream 246389 9578837 ~ 9579097 (+)
G116027 NA non-coding upstream 247886 9577396 ~ 9577600 (+)
G116199 NA non-coding downstream 199009 10032553 ~ 10041833 (+)
G116214 NA non-coding downstream 286633 10120177 ~ 10121558 (+)
G116264 NA non-coding downstream 381843 10215387 ~ 10216789 (+)
G116300 NA non-coding downstream 511191 10344735 ~ 10345082 (+)
G116301 NA non-coding downstream 517420 10350964 ~ 10351562 (+)
AMCG00018380 NA other upstream 212568 9606661 ~ 9612918 (+)
AMCG00018372 LOC106517353,LOC107388090,LOC103381742,LOC101078739,LOC103481046,LOC108270924,LOC108413555 other upstream 260922 9562061 ~ 9564564 (+)
AMCG00018374 NA other upstream 312250 9512314 ~ 9513236 (+)
AMCG00018369 NA other upstream 339340 9480952 ~ 9486146 (+)
AMCG00018368 NA other upstream 378342 9439657 ~ 9447144 (+)
AMCG00018405 NA other downstream 170729 10004273 ~ 10012673 (+)
AMCG00018406 NA other downstream 210908 10044452 ~ 10046523 (+)
AMCG00018422 NA other downstream 424261 10257805 ~ 10292261 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other downstream 1418815 11252359 ~ 11256165 (+)
G116585 rbbp6,LOC107689611 other downstream 2132703 11966247 ~ 11970778 (+)

Expression


Co-expression Network