AMCG00018406


Basic Information

Item Value
gene id AMCG00018406
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 10044452 ~ 10046523 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018406
TATCTGGGGAATGGGACCAATTTGAGAGCGATCGGAGAAAGCGTCGCTTGAAACAGAAGAGATGTGCGCCTCTGTCGGGACCCCGGCAGTCCTGTCGTAATGCTGTGACTGGAGAAGCGCGGACAGCGGGTCTGTCACAGCGGCGCGTCTCTGCATGGCGGGCCTGTCTCAGCTAGTGTTCAGGTTTTCGGGCTCCGCTGGCAGGACTTATGGGGTGTTTTCTAAAGGGCTGACAAGGACtctgttgatattttttaaCCTGGCCTGGCGGTTGAGAATCCGCTTCCCCTATCTCTACCTCATCGCTTCCATGATGTTCAATGTACGGCTCCAGGTCCACATTGAAATACACTAATGGGTCACACAAGGACCCCTGCATTATCCTTTACATTTGTGACGGTGAAGACCCCCCACCCCGTTTGGCAGACTGACAGAATGTAGCAATTACTTCTGGACACACGGGGAGGATGACGACAGGGGTGACGTCATTGTCTCCTCTCCACCCTTCCGTCGGTGAGCAAATGCAGTGCCTTAAGTTCAGCAAGGCTACGGTGACGTCATGGGCAAAGTGCGACGTCCTGTGGTGGGCGGCTGAGCAGACGAGCCATCCAAAGGGAGACGTGCCTGGGATCTATAGGAAGGGGAGACCTTCGCCAGCCTTTTATTTTCAGGGATAATAAGTTATGTcaatcatgtatttaaaattacagtgaCAGCGTTCAGGGCTTTGGATGTTGGCTACCCAGATATCGAGTTGGAGTGAAATCGGGGAGTGCACACTGACTGCACCCTCCGCACATCCCATCATCTCAAAAGGGAAAACTGGAGTCAATTCCGGACCGCACACCAACCTTTAAGCAAcgggggaggggagggacgcCAACCTGACCGGCTTCCTGTCTGCCGCTGTTCTTTGCTGAGTACCAAGGAGCAGCCGGTGTGATCACGCTGGAGATGGGAGCCGAGGTTTGCGTGGATGAGCTCCCTACACGTCCCACAGCACAGGCTGCAGCCCGCACCGCCCCGCGTCTCCAGCGAGAGATGCCCGTCGGTGTTGGCTGTTCATGGGCGTCGGGAGGTGGGGGTCTGTGGCACACAAACGCACGCCCCTCGGGATTATCCCCGCGTAGCGCTGTACAGAAATAAGAGCTCGTttttgtagcgcagatttccgcagttctgtgcagatctgcagaatcgctccgatcccattggtggaacaGCGCAGATCCGCGAAGAACTGCGGACATCAGCGCTACACCAACGCCACCTAAACACTTTTGATCATtggttttagattttaaatactttataaattgttttttgaGTAGtgattttttgtgtttcttttgaaacaataaaatattatgtaaattgtcGTGTTCACGTGTTTTGTACTTTGCTTTTTTCGATTATGTACTTGTAGGTAACGTTGAGTTCCACAAGCTGCGCCCTTTAATAAACCAAAGTATTACAATTTCATGCCAGCAGATGGCAGTGTTTGCTATGTTTTACACACAGGCAGCATGGTTGCTTGTCTTTAACTGGTATTGCTTCGCACTTAATTAGAGTCGGTCATTTACACATGGTTCCCAGATAgatttacagtatattaaaagCATACAAGTATgagctgtattattttttctccttttccgGTGGGTTTTTGTGTTGTAAGAAAAATCGTGAAGGAATTGAGAAATCAAC
>TU145543
GGAAACAACTGGGTGTATCTGGGGAATGGGACCAATTTGAGAGCGATCGGAGAAAGCGTCGCTTGAAACAGAAGAGATGTGCGCCTCTGTCGGGACCCCGGCAGTCCTGTCGTAATGCTGTGACTGGAGAAGCGCGGACAGCGGGTCTGTCACAGCGGCGCGTCTCTGCATGGCGGGCCTGTCTCAGCTAGTGTTCAGGTTTTCGGGCTCCGCTGGCAGGACTTATGGGGTGTTTTCTAAAGGGCTGACAAGGACtctgttgatattttttaaCCTGGCCTGGCGGTTGAGAATCCGCTTCCCCTATCTCTACCTCATCGCTTCCATGATGTTCAATGTACGGCTCCAGGTCCACATTGAAATACACTAATGGGTCACACAAGGACCCCTGCATTATCCTTTACATTTGTGACGGTGAAGACCCCCCACCCCGTTTGGCAGACTGACAGAATGTAGCAATTACTTCTGGACACACGGGGAGGATGACGACAGGGGTGACGTCATTGTCTCCTCTCCACCCTTCCGTCGGTGAGCAAATGCAGTGCCTTAAGTTCAGCAAGGCTACGGTGACGTCATGGGCAAAGTGCGACGTCCTGTGGTGGGCGGCTGAGCAGACGAGCCATCCAAAGGGAGACGTGCCTGGGATCTATAGGAAGGGGAGACCTTCGCCAGCCTTTTATTTTCAGGGATAATAAGTTATGTcaatcatgtatttaaaattacagtgaCAGCGTTCAGGGCTTTGGATGTTGGCTACCCAGATATCGAGTTGGAGTGAAATCGGGGAGTGCACACTGACTGCACCCTCCGCACATCCCATCATCTCAAAAGGGAAAACTGGAGTCAATTCCGGACCGCACACCAACCTTTAAGCAAcgggggaggggagggacgcCAACCTGACCGGCTTCCTGTCTGCCGCTGTTCTTTGCTGAGTACCAAGGAGCAGCCGGTGTGATCACGCTGGAGATGGGAGCCGAGGTTTGCGTGGATGAGCTCCCTACACGTCCCACAGCACAGGCTGCAGCCCGCACCGCCCCGCGTCTCCAGCGAGAGATGCCCGTCGGTGTTGGCTGTTCATGGGCGTCGGGAGGTGGGGGTCTGTGGCACACAAACGCACGCCCCTCGGGATTATCCCCGCGTAGCGCTGTACAGAAATAAGAGCTCGTttttgtagcgcagatttccgcagttctgtgcagatctgcagaatcgctccgatcccattggtggaacaGCGCAGATCCGCGAAGAACTGCGGACATCAGCGCTACACCAACGCCACCTAAACACTTTTGATCATtggttttagattttaaatactttataaattgttttttga

Function

GO:

id name namespace
GO:0051301 cell division biological_process
GO:0009987 cellular process biological_process
GO:0006260 DNA replication biological_process

KEGG:

id description
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast
ko04114 Oocyte meiosis

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018406 True 1707 mRNA 0.50 2 10044467 10046523
TU145543 False 1342 lncRNA 0.54 2 10044452 10046143

Neighbor

gene id symbol gene type direction distance location
AMCG00018407 NA coding upstream 18962 10015946 ~ 10025490 (+)
AMCG00018396 NA coding upstream 76047 9960221 ~ 9968405 (+)
AMCG00018397 polr3e,LOC106589521 coding upstream 101151 9926956 ~ 9943301 (+)
AMCG00018401 NA coding upstream 118506 9899962 ~ 9925946 (+)
AMCG00018400 NA coding upstream 149025 9882358 ~ 9895427 (+)
AMCG00018415 NA coding downstream 42899 10089422 ~ 10094644 (+)
AMCG00018412 LOC108437157,LOC107710695,LOC102303741,LOC101486233 coding downstream 54401 10100924 ~ 10120054 (+)
AMCG00018413 NA coding downstream 91457 10137980 ~ 10150773 (+)
AMCG00018414 pms2 coding downstream 104442 10150965 ~ 10159643 (+)
AMCG00018411 NA coding downstream 113941 10160464 ~ 10174296 (+)
G116199 NA non-coding upstream 2619 10032553 ~ 10041833 (+)
G116088 NA non-coding upstream 297065 9689765 ~ 9747387 (+)
G116035 dnah3,LOC107561106 non-coding upstream 425547 9618670 ~ 9618905 (+)
G116034 dnah3,LOC108263105 non-coding upstream 430671 9612982 ~ 9613781 (+)
G116028 NA non-coding upstream 465355 9578837 ~ 9579097 (+)
G116214 NA non-coding downstream 73654 10120177 ~ 10121558 (+)
G116264 NA non-coding downstream 168864 10215387 ~ 10216789 (+)
G116300 NA non-coding downstream 298212 10344735 ~ 10345082 (+)
G116301 NA non-coding downstream 304441 10350964 ~ 10351562 (+)
G116302 NA non-coding downstream 309449 10355972 ~ 10357357 (+)
AMCG00018405 NA other upstream 31779 10004273 ~ 10012673 (+)
AMCG00018380 NA other upstream 431534 9606661 ~ 9612918 (+)
AMCG00018372 LOC106517353,LOC107388090,LOC103381742,LOC101078739,LOC103481046,LOC108270924,LOC108413555 other upstream 479888 9562061 ~ 9564564 (+)
AMCG00018374 NA other upstream 531216 9512314 ~ 9513236 (+)
AMCG00018369 NA other upstream 558306 9480952 ~ 9486146 (+)
AMCG00018422 NA other downstream 211282 10257805 ~ 10292261 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other downstream 1205836 11252359 ~ 11256165 (+)
G116585 rbbp6,LOC107689611 other downstream 1919724 11966247 ~ 11970778 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other downstream 2442944 12489467 ~ 12500054 (+)
AMCG00018491 slc5a10 other downstream 2456500 12503023 ~ 12520331 (+)

Expression


Co-expression Network