AMCG00018412 (LOC108437157,LOC107710695,LOC102303741,LOC101486233)


Basic Information

Item Value
gene id AMCG00018412
gene name LOC108437157,LOC107710695,LOC102303741,LOC101486233
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 10100924 ~ 10120054 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018412
ATGGTCCCAAAGGCCAGTGCAGTCTACGCTGTGGAATTAGTTAAGGCACCTGAGGACCTCTCCCTAGAGGAAAGGGATGAACTCTCGAACATACGGCGCAGAAAAAAAGAGCTCTTGGATGATATTGAGAGGTTGAAATTTGAGATTGCAGAAGTCATGACTGAGATCGAGCAGCTGACATGCGTCGGGGAAAGCAAAACatcacagagaaacaaacaaattgcaATGGGAAGGAAGAAGTTCAACATGGACCCTAAAAAGAACACTCCTGAAGACATAGCCCAGTTCCTGTACAAAGGGGAGGGCTTGAACAAGACTGTCATTGGGGACTACTTGGGCGAACGGGACGATTTCAACATTAAGGTTCTGCAGGCTTTCGTGGAGCTCCATGAGTTTGCGGACCTCAACCTTGTACAGGCCTTGCGGCAATTCCTATGGAGCTTCAGGCTTCCAGGTGAAGCTCAGAAGATCGATCGCATGATGGAGGCCTTTGCGTCGCGGTACTGCCAGTGTAACCCCGGAGTCTTCCAGTCTACAGACACATGCTACGTCCTGTCCTTTGCCATCATCATGCTGAACACGAGTTTACACAACCCCAATGTGCGGGACAAGCCGGCTGTGGAGAGGTTTATTTCCATGAACCGCGGGATCAACGAAGGAGGCGACCTGCCCGAAGAGCTGCTCAGGAATTTATATGAAAGTATTAAAAACGAGCCCTTCAAGATTCCTGAGGACGACGGCAATGACTTGACACACACCTTCTTCAACCCGGACCGAGAGGGATGGCTGTTGAAGCTGGGCGGCAGAGTGAAAACCTGGAAACGAAGGTGGTTTATCCTGACTGACAACTGCCTTTATTACTTTGAGTATACAACAGACAAAGAGCCCCGAGGCATCATTCCCCTGGAGAATCTCAGTATCAGGGAGGTTGAGGAGCCCAGAAAGCCAAACTGCTTTGAGCTGTATAACCCCAACCACAAGGGACAGGTGATAAAGGCATGCAAGACGGAGGCGGACGGCCGGGTGGTGGAGGGGAACCATGTGGTGTACAGGATATCGGCCCCCACACCCGAGGAGAAGGAAGAGTGGATCAAATCCATCAAAGCCAGTATCAGCAGGGATCCTTTCTACGACATGCTGGCCACCAGGAAGAGACGGATTGCCAACAAGAAGTAACAGCGAGCGACAGACCTGCACAGAGCCACTTCTGCAGTATTCACAGGGCCGACTCCAGAGACCAAGGGATTTGCAACACTTATCAAACTAGGAGCAGGACAAGAGGGGGCCAGATCTTTGGGATCCGGCTGAAAACCGGCCAAAAAAAAGCCTCCCCCCTATTTTCTGCTGATTCCTTTGGTTAATCCCAGTACCCTGGACAGGAAGAAATAAACAGCAGGGGGTCTCATACACTTTGTAAATGTTCACCCTGGGAGAATTTAAAAAGATTTGTGTATCCCgtgttatacacacacacctgtatgtattgtacacgggtgtatatgtatgtatgcactaCATACACATCCACTCCAGGAATGAACTGAACCCTTAATACTTTTATTGGGgggggtttgtttttctcctcttaAATTAACAACACAGACTTTGTATTATTGACAGGGCATTTTTGATGGCACTGAAGACTTAACACTGTTGATCAGTGAATGTGAATAATTctttgaaggaaaaaacaaaagtgctctTAAATTTACATTCTGAAGATGCAAATGTAAGACTGAAAGGGACTGTGACACAGCTAAGCCCCCTCCCATGCAAATCCTGTCATAGCAGCGGTCACGTCCCATACAATGTTCAGCCGTGGGCGACTCGGTGCAGGAGTCACGTGCCAAGGCGTGCTTTCTCTTAGATATTCTTTGTTTAAATTGCCGAGCAGTTGGCAAGAAATTTCCCGTTCTCATGGAGTGCTTCTGGTGCCATTACTTCTGCGAACACTAGTCTACAGCtagtttataaatgtacacagattcaaagaaaaaatatatatattgacaccAGTCTGAGTCAGCTGGACTGAtttcttgtcttgtttttaaataaataaataaaaggaaaaaaaaaaaaaaacttgttaaCACTATATACCATGAATGGTTTTGGTTTTTTCCAGTGAAACATGGGGTACCAAACAGTAAATTAAGCTTTTCATATAAAATCCCAATAAACAAAGGCAGCATGAACAATGAGGTCAATGTATTGAGGCAATGCATACGCGTCCTAGGATTCTCCATAGTGTAATATTATAGTGAAGATGGAGAGCCGCTTGCTGCCAGAGTTTGTCTGTAGATCAACAACTACAGTTATAACCAGTgcttcttttatatttatttctttgtgcaattgcaacaaacaaaaaaaagaaaaaaaaaactatttgtaactgttaaaatatgtaGATTCTTCCTTTAAGTTATGTGTAAATATTGTATAGATTgtgtgagttttttttgtttgttttttgtattattgcatgTAAAAGCCTCCTGGCAATAGCTTTGCACCAGTGAAGATCAGGGGTGGAGGCTGTTGAGAAAAGCAGCACTGAGCAATTCAAATTAGGGTTGAGTGAGGGTTTAGAGTCATCGAACATGTTCCCTGACTGGTGAAGCTGATGCCAACAGACTTTTCCGTGTGGCTGTGAAATAAAAAGCCCCAACACAGGGTACAATTTAGTCTTGAAATGTCCCGCCAGACAGTAAGCATTAATCTTAAGTCTAGGCCACGGGCAGTGTGTAGGTGTGTACACACGCATTTGTACTCCGATAACAAGTGCACATCTGATATACTAAATGAagaattaacaaaatgtttagACCTTTCTATGTAAGTGTATAAAATCTGACATGACGACAATTAAAAGCCAGCTATTGGTTTCTCATTAAACAACTGTGTGGAATTTCCTTTGATCCCGACGTGTGAGGTGGCCCTATGAGTGTGTAAAACTGCAGTGTACATACAATGTGC

Function

NR:

description
PREDICTED: cytohesin-3 isoform X2

GO: NA

KEGG:

id description
K18441 CYTH; cytohesin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018412 True 2982 mRNA 0.44 13 10100924 10120054

Neighbor

gene id symbol gene type direction distance location
AMCG00018415 NA coding upstream 6280 10089422 ~ 10094644 (+)
AMCG00018407 NA coding upstream 75434 10015946 ~ 10025490 (+)
AMCG00018396 NA coding upstream 132519 9960221 ~ 9968405 (+)
AMCG00018397 polr3e,LOC106589521 coding upstream 157623 9926956 ~ 9943301 (+)
AMCG00018401 NA coding upstream 174978 9899962 ~ 9925946 (+)
AMCG00018413 NA coding downstream 17926 10137980 ~ 10150773 (+)
AMCG00018414 pms2 coding downstream 30911 10150965 ~ 10159643 (+)
AMCG00018411 NA coding downstream 40410 10160464 ~ 10174296 (+)
AMCG00018425 NA coding downstream 178949 10299003 ~ 10299554 (+)
AMCG00018423 bri3 coding downstream 213467 10333521 ~ 10342424 (+)
G116199 NA non-coding upstream 59091 10032553 ~ 10041833 (+)
G116088 NA non-coding upstream 353537 9689765 ~ 9747387 (+)
G116035 dnah3,LOC107561106 non-coding upstream 482019 9618670 ~ 9618905 (+)
G116034 dnah3,LOC108263105 non-coding upstream 487143 9612982 ~ 9613781 (+)
G116028 NA non-coding upstream 521827 9578837 ~ 9579097 (+)
G116214 NA non-coding downstream 123 10120177 ~ 10121558 (+)
G116264 NA non-coding downstream 95333 10215387 ~ 10216789 (+)
G116300 NA non-coding downstream 224681 10344735 ~ 10345082 (+)
G116301 NA non-coding downstream 230910 10350964 ~ 10351562 (+)
G116302 NA non-coding downstream 235918 10355972 ~ 10357357 (+)
AMCG00018406 NA other upstream 54401 10044452 ~ 10046523 (+)
AMCG00018405 NA other upstream 88251 10004273 ~ 10012673 (+)
AMCG00018380 NA other upstream 488006 9606661 ~ 9612918 (+)
AMCG00018372 LOC106517353,LOC107388090,LOC103381742,LOC101078739,LOC103481046,LOC108270924,LOC108413555 other upstream 536360 9562061 ~ 9564564 (+)
AMCG00018374 NA other upstream 587688 9512314 ~ 9513236 (+)
AMCG00018422 NA other downstream 137751 10257805 ~ 10292261 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other downstream 1132305 11252359 ~ 11256165 (+)
G116585 rbbp6,LOC107689611 other downstream 1846193 11966247 ~ 11970778 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other downstream 2369413 12489467 ~ 12500054 (+)
AMCG00018491 slc5a10 other downstream 2382969 12503023 ~ 12520331 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000112_03344466_03359943 CYTH3, CYTH3A coding CI01000112 null 3344466 ~ 3360296 (+)