AMCG00018413


Basic Information

Item Value
gene id AMCG00018413
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 10137980 ~ 10150773 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018413
ACTACTCATATAACTTCCGTTGTCGAGGAATTTATGGCTGTTTTCTGAGACAAACACTTCGGTTTTTACAAAACACGGACATATGAATGGCTTAGAAGATGGCAAGACCTAAGCAGGACGCTTGGGTTGTTCGTGAATGTAACGTGACAATATTGACTGTAATATTAGTAAACTTATTTTGCAGACGGGGGGACTAGTGGATATATTTATCTCGGAGAGGCATGCTTCCGCGCAGGAGGCGCCCCTTGCTGGGGGAAAGTTCTGGTAACCTGTCTTTATTGGTAAGGGCACACTTGGCGAATAGACATAGCGAAAATGTGATTTTACAGTATCCCGAAGAGGACGACGATGATGTCCAGTTTGACACCTCAGACTCTCCTGATCAATATGAGGCACAACTGGGTGACAAGAAATATTTGCCTATCCAGGAGTTTGCCTCGGCCATCCCCAACCAGCTGCTCCTGGGGTCTCTGCTGGAACACCTGTGCTGCGTGTATGAGAAGGACCCCCATCGCTCCCGCCTGCTCTTTAAAGTGATTGGTCAGCATCTGTCAGCAATGAACCTGTTGTCCCCCCTGGCCTTCAGCGATGAGTTCAGCACTGTGAGACTGCAGCACAACCGTGCCTTCACTGAGCTATTGCACGCGGCCAACAACATAGTCTGCCCCCAGgagCTTAGATTTCTGGATTCTGGTGGCGAAAGTAATGCTTTGAGATCCAAAGATGGGCTTTTCCAAGCACAGACATCTCGATACCTCAGTGAGTTTGAAGAAATATCCAGGCTCGGAAAAGGCAGCTATGGCAAAGTTTTTAAGGTGAAAAACAAGTTGGATGGTCAGCAGTATGCAGTGAAAAAGATTCTCATCAAAAATGTTTCGAGGGATGACTGTATGAAGGTTCTCAGGGAAGTGAAAGTACTGGCTGGGCTTCAGCACTCCAACATTGTGGGCTATCACACTGCCTGGATGGAGCATGTGCAGCCCCCTGAGAAAAGTATGAAATCCGTTCTCTCTGATTTGCCTGCTCTGGAGAGGCCATCACAGAGGGAAGATCCTGAGGAATCCAGTAGCAGTAGCAACAGCTCCTCTATCGTGTTTGAGAACTCGGGGACTTCGAGGGATGAGAAAGGGGATTGTCTCGCCAAGAGTAACATCTCTAGGGAAGACTCGTGGAGTGTTTCTGTGCCCAGGGAGGACCAGAGTTCTGCTGTTGGGCCTGCAGGCTGTCCCAAGGGGAAGCACAACTTGGAAGGCCTGATTCCTTGTGTGTATTTAGGACCCACTCGCTCGACAATCAGCGGCTGTCCTGCCGTCAGCTGGGACAGGATGGCACTGACTGAAGAGAGACGTAACAGCTCCAAGCTGgaagtaaacaacaacaactcctATCTGGAGAGGGACAGCCAGCAGTGGAGTGAGCAGTGCCCCCAGAGGGAAGCCTGCGTGCACAGATACACTGAGATACAGTTCCATCTCATGCTCTACATCCAAATGCAGCTGTGTGAAATCTCCCTCAGGGACTGGATACTGGGCAGGAACATGGCACCCAGAAAGGAGCTGCCTAGAAATATTTTCCTTCACGATGAGGATTTCCACGTGCGGATCGGAGATTTCGGACTTGCTTGCAAGGATATGATTGTGGATGAGAGCGAGCAGTTGTCACCCGTCACACAGGCCAGTGACTCTGCACACACGTCTGGAGTAGGAACCTATGTTTATGCAGCTCCAGAACAACTGGAAGGCTCCAATTATGATTCCAAGTCAGACATGTACAGTGTGGGGGTCATTGTTCTGGAGCTGTTCCAGCCATTTGGGACGGAGATGGAGAGGGTGCGGACGCTGGGGGAGCTGCGCAAGGGGACGATCCCAGAGGCCTTTACCCAGCACTGGCCCCTTCTCGCCAAGTTAGTCTGCCAGCTCACCAGCCCAGACCCTGCCCTGCGGCCCAGCGCTGCGCAGCTGCTGCACGGCGAGCTCTTCCACAGCTCTGAGCGGGTTATTCACACCTTGCAGAGGAAAGTGGAGGAGCAGGAATGTGAAATTGTGCAGCTGAAAAGGCAGATCCATGAGCTCCTCACCATGGGGCAGAAAGAGGACAAGACCCCAGTGCTGCTGACACCAGACAAACTGACCCTCACAGGGAGGCAGCTGCTGtgattgtgtaaaaaaaaaagaaaaaagaaaaattcgCTGCAAatggtgtatttgtatttaataattgtacTAATTTATGCAAGATTTAATGGTTTTAAGCTGTGTGAAGAATATTTTGTACATAgttgctgtgtttctctcaAAAGGCCtgagaaataaatctgtaaCTGATCAAGTTAACTCTCAGGTCCCTAAGtaataaaaaactaaaggaaactgtttaaatgtaatttctttagTTCTGGAATTATATAGAAATGCACTCAAACAGAAGTCAAGAAGAGCCAAAGTGGACCAAaagtttaatgttatttttagaagaaaaactGCTACAAAGGGTgttaaaagtagttttttttgttttttttatattacagtactTAACATTTCACCCACTGAGTTGTAAcccaaataatatttataaatgggCATTGAAACAGCACACATCTACATGTAGGCACAAGGTGGGAAGGAGATTCTGTAATCCAACTATCTGACATCTTCACTTTAGATTTGGgcaacaatacagtacagactaTTTCACTTTGACTGTAGAACCTGGTAGGCACAGTTGAAGTGGGACAAATTCTCACACGATTTCATCCATTTCTGAACGTTGGCGGGGGCAGAGGTATTGCTGCCTGACCGCAGCAGGGCACAGTAGCACACGATGTCAGCCAGCGAGAGATCGGAGCCCACCAGCCACGCCACCCGGCCCAAAGCCCCGTTCAGCGCCCGCAGAGCGGCGGCCTTCTCTTTACTGCTGCCCTCTGCCAGCTGGAAGATGGCCGTGTCTACCCAGCTGTCCATCAATGTGGCACTCACAGCATCCTGGGGTCCAGGGCTCAGCAGCCTGTACAGGAAGCGGGCGATGTTGCCCTCCCCTTCGATGGGGCACATGTTCTGCACACTGAACTTCATCTGTGGCGCAGGCACATCTTTCCATATGAGTGTGAAGCCGAGCTGGAAGTCGTGGCGGGAGTGGTTGAGGGTATTGCGCGGTCCAAGGCAGGCGAGGAGCTGCGGCGGGATGGCAGTGACGGAAGAGTGCACGTGGACGGCTGACAGCACCTTGTAGCGCTGACACAGCAGGCTGTGTAGCACCAGCAGCGAGAGGGGTGGCTGCGCAGGGTCGGCGTTCACCACAATGTCCCTCAGAGCTCCATAATCCtacaacaaCAGTGAGTCCAGATCAGCAGGGCCAGTGAACACTGCACTGCCCATTCCCTGAGACAGGCTGGCCACGTCGATGTCAGCGTCGGGGGTGGTGATGGTCTTGGTCAGGCCGTCCACAGTGGCTTTCAGCTCATACAGCCGCCTCAAGATCTCATCCTGCCGAGCCTCCAGCGCCCTGACCGCCGGGTCTACCTCCCCATTCTGCAGTGCGCATGTCCACAGCCGCTTTTCTGTTCGTGGATATTCGGTAGCTTGTACATGCAGCTCGGCAAGTCAACCTCCATGTGTCCCGCACTAACTGCTTTTACCTGGTACATCGACATGACCTCTGACGgttactggaaaaataaaactgaaatcagaAATCGCTTTCACTGCTCGTATATCCACTGCCGGTGCTCTCCACACACTTCAACCCAGCAGACCAACCCCCACTGCCAAAGGAAAGACCCAGCCCTCCGTCACATCCGGCAGATAGCAGCCAACTACAGTTCTGCCGGATTTGGGCTCCttcgccaatgggatcggtgcgattctgcagatctgcgcagaactgcggaaactacgctacacgaacgcga

Function

GO: NA

KEGG:

id description
K16194 EIF2AK1; eukaryotic translation initiation factor 2-alpha kinase 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018413 True 3910 mRNA 0.51 17 10137980 10150773

Neighbor

gene id symbol gene type direction distance location
AMCG00018412 LOC108437157,LOC107710695,LOC102303741,LOC101486233 coding upstream 17926 10100924 ~ 10120054 (+)
AMCG00018415 NA coding upstream 43336 10089422 ~ 10094644 (+)
AMCG00018407 NA coding upstream 112490 10015946 ~ 10025490 (+)
AMCG00018396 NA coding upstream 169575 9960221 ~ 9968405 (+)
AMCG00018397 polr3e,LOC106589521 coding upstream 194679 9926956 ~ 9943301 (+)
AMCG00018414 pms2 coding downstream 192 10150965 ~ 10159643 (+)
AMCG00018411 NA coding downstream 9691 10160464 ~ 10174296 (+)
AMCG00018425 NA coding downstream 148230 10299003 ~ 10299554 (+)
AMCG00018423 bri3 coding downstream 182748 10333521 ~ 10342424 (+)
AMCG00018426 NA coding downstream 281417 10432190 ~ 10440657 (+)
G116214 NA non-coding upstream 16422 10120177 ~ 10121558 (+)
G116199 NA non-coding upstream 96147 10032553 ~ 10041833 (+)
G116088 NA non-coding upstream 390593 9689765 ~ 9747387 (+)
G116035 dnah3,LOC107561106 non-coding upstream 519075 9618670 ~ 9618905 (+)
G116034 dnah3,LOC108263105 non-coding upstream 524199 9612982 ~ 9613781 (+)
G116264 NA non-coding downstream 64614 10215387 ~ 10216789 (+)
G116300 NA non-coding downstream 193962 10344735 ~ 10345082 (+)
G116301 NA non-coding downstream 200191 10350964 ~ 10351562 (+)
G116302 NA non-coding downstream 205199 10355972 ~ 10357357 (+)
G116303 NA non-coding downstream 208909 10359682 ~ 10359903 (+)
AMCG00018406 NA other upstream 91457 10044452 ~ 10046523 (+)
AMCG00018405 NA other upstream 125307 10004273 ~ 10012673 (+)
AMCG00018380 NA other upstream 525062 9606661 ~ 9612918 (+)
AMCG00018372 LOC106517353,LOC107388090,LOC103381742,LOC101078739,LOC103481046,LOC108270924,LOC108413555 other upstream 573416 9562061 ~ 9564564 (+)
AMCG00018374 NA other upstream 624744 9512314 ~ 9513236 (+)
AMCG00018422 NA other downstream 107032 10257805 ~ 10292261 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other downstream 1101586 11252359 ~ 11256165 (+)
G116585 rbbp6,LOC107689611 other downstream 1815474 11966247 ~ 11970778 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other downstream 2338694 12489467 ~ 12500054 (+)
AMCG00018491 slc5a10 other downstream 2352250 12503023 ~ 12520331 (+)

Expression


Co-expression Network