AMCG00018426


Basic Information

Item Value
gene id AMCG00018426
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 10432190 ~ 10440657 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018426
ATGTTCGCTTTTTTAGCCGGACTGATTTGCTTCTTTGCGCTTGGGGGTGGCCCAGGGGTGCGCGGACAGGATACCCAAGGTCCTCGCTTTGTGTGCACCTCCATTCCCCTAGACGCGGACCCCAGCTGCCCATTGCCCCCTATGCCCATGCAGAGCACAAGCTCCCAGGAGGAAGACCTTAAAAACACGGTCATGCAGCTCCGGGAGACCATCCTGCAACAAAAGGAGACCATCGTCAACCAGCAGGACACCATCAAGGAGCTGACGGGCAAACTTTCCCGCTGCGAGTCCGCCAGCCAAAGCTCGCCGCAGGATGGCAGGTACAACGGCCAGGGCTCCTGGAGAAAGGACTACAGCAAGAACACCATGGGGGACCTGCCGCGGGACCCCGGGGAGACCATCGACCACCTGGGAAAGACCATGCAGAGTCTGAAAGACCGGCTGGAGAGCTTAGAGCAACAACATATGCGCGCCAATGTGTCCGGCGCAGCTTTCCCTAATGAGCTCCGAGACCTGCTCCAGCGCCGCCTTGGAGACCTGGAAAACCAGCTCCTGAGCAAAGTGGCCGAACTGGAGGATGAGAAGACGCAGCTGTACAATGAGACGGCCGCCCACCGCCACAGGACTGAGACTGTGCTCAACTCCCTGCTTGAGAGAATCACTGAGCTGGAGAAAGGTAACAGCGGCTTCAAGTCCCCAGAGGATTTCAAGGTGTCCCTGCCTCTGCGCACCAACTATCTGTACGGCCGGATCAAGAAAACTCTGCCCGAGATGTATGCCTTCACTGTGTGCATGTGGCTGAAGTCGAGCGCCAGCCCAGGCATTGGCACCCCTTTCTCCTACGGCGTGCCAGGCCAGGCCAATGAGATAGTGCTGATCGAGTGGGGCAACCACCCCATAGAGCTTCTGGTTAATGACAAGGTGGCCGAGCTCCCTCTGTCAGTTAGCGACGGCAGGTGGCATCACATCTGCATCACCTGGACAACCAGAGACGGGCTGTGGGAGGCCTACCAGGATGGAGAGAAGCTAGGCTCAGGGGAGAACCTGGCCCCTTGGCATCCAATTAAGCCTGGTGGGGTCATTATCCTGGGGCAGGAACAGGACACCGTAGGAGGCCGCTTCGATGCCACGCAGGCATTTGTCGGGGAGCTGAGCCAGTTCAACATGTGGGACCGTGTGCTGAGGCCTGTGGACATCATGAATATGGCCAACTGCTCCTCCTACATGCCAGGCAACATCATCCCCTGGGTGGACAACAATGTGGAGGTGTTTGGCGGCGCCACCAAGTGGGCCCTGGAGATGTGCGAGGACCGACTTTTCGACTCTTAA

Function

GO: NA

KEGG:

id description
ko04727 GABAergic synapse
ko04721 Synaptic vesicle cycle
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018426 True 1329 mRNA 0.58 5 10432190 10440657

Neighbor

gene id symbol gene type direction distance location
AMCG00018423 bri3 coding upstream 89766 10333521 ~ 10342424 (+)
AMCG00018425 NA coding upstream 132636 10299003 ~ 10299554 (+)
AMCG00018411 NA coding upstream 257894 10160464 ~ 10174296 (+)
AMCG00018414 pms2 coding upstream 272547 10150965 ~ 10159643 (+)
AMCG00018413 NA coding upstream 281417 10137980 ~ 10150773 (+)
AMCG00018429 trrap,LOC107699870 coding downstream 56216 10496873 ~ 10562962 (+)
AMCG00018432 trrap coding downstream 134239 10574896 ~ 10609128 (+)
AMCG00018434 NA coding downstream 484379 10925036 ~ 10934367 (+)
AMCG00018435 LOC107699871,LOC105888715,LOC106589575,LOC106609787,LOC108274201,LOC107669229 coding downstream 517908 10958565 ~ 10975479 (+)
AMCG00018436 NA coding downstream 551500 10992157 ~ 10996021 (+)
G116303 NA non-coding upstream 72287 10359682 ~ 10359903 (+)
G116302 NA non-coding upstream 74833 10355972 ~ 10357357 (+)
G116301 NA non-coding upstream 80628 10350964 ~ 10351562 (+)
G116300 NA non-coding upstream 87108 10344735 ~ 10345082 (+)
G116264 NA non-coding upstream 215401 10215387 ~ 10216789 (+)
G116354 NA non-coding downstream 297629 10738286 ~ 10739175 (+)
G116358 NA non-coding downstream 536365 10977022 ~ 10979685 (+)
G116374 NA non-coding downstream 620912 11061569 ~ 11083789 (+)
G116477 NA non-coding downstream 970148 11410805 ~ 11412070 (+)
G116479 NA non-coding downstream 974824 11415481 ~ 11415738 (+)
AMCG00018422 NA other upstream 139929 10257805 ~ 10292261 (+)
AMCG00018406 NA other upstream 385667 10044452 ~ 10046523 (+)
AMCG00018405 NA other upstream 419517 10004273 ~ 10012673 (+)
AMCG00018380 NA other upstream 819272 9606661 ~ 9612918 (+)
AMCG00018372 LOC106517353,LOC107388090,LOC103381742,LOC101078739,LOC103481046,LOC108270924,LOC108413555 other upstream 867626 9562061 ~ 9564564 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other downstream 811702 11252359 ~ 11256165 (+)
G116585 rbbp6,LOC107689611 other downstream 1525590 11966247 ~ 11970778 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other downstream 2048810 12489467 ~ 12500054 (+)
AMCG00018491 slc5a10 other downstream 2062366 12503023 ~ 12520331 (+)
AMCG00018498 NA other downstream 2102888 12543545 ~ 12611879 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000351_02039609_02055035 NPTX2, NPTX2A coding CI01000351 null 2039145 ~ 2055508 (-)