AMCG00018429 (trrap,LOC107699870)


Basic Information

Item Value
gene id AMCG00018429
gene name trrap,LOC107699870
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 10496873 ~ 10562962 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018429
ATGGCGTTCGTCCCTACGCCCAGCCCCACGGTGGTGGACCAGACCACGCTGATGAAGAAATACCTGCAGTTTGTGGCAGCACTCACGGACAACAACACTCCTGACGAAACCAAGCTGAAGATGATGCAAGAAGTTAGCGAGAACTTTGAGAATGTGACATCCTCCCCTCAGTATTCCACCTTTTTGGAACACATCATCCCTCGCTTCCTCACCTTTCTGCAGGATGGAGAGGTGCAGTTCCTACAGGAGAAGCCTGCCCAGCAACTGCGGAAGCTGGTCCTGGAAATAATCCATCGCATCCCCACCAATGAGCATCTGAGACCGCACACCAAGAACATCCTGTCAGTCATGTTCCGCTTCCTAGAGGCATTCAGGGCggtctctgtgtttcagatcGAGAGCGAGGAAAATGTGCTGATTTGCCTCCGGATCATCATTGAGCTACACAAGCAGTTCCGGCCTCCCATCACCCAAGAGGGCCGCTACTTTGAGAACCCGCAGGTGATCACCGAGAACACGGTGCCCTCGCCTGAGATGGTCGGCATGATCACCTCGGTGGTGGTGAAGACGGCGCCGGAGAGAGAAGACAGCGAGACCCGCACGCACACCATCATCCCCCGCGGCTCACTGTCCCTCAAAGTGCTGGCTGAGCTGCCCATCATCGTTGTGCTGATGTACCAGCTCTACAAGCTCAACATCCACAACGTTGTGGCGGAGTTTGTGCCTCTCATCATGAACACCATCATGCTGCAAGTGTCTCCTCAGGCAAGGCAACATAAGCTGTACAACAAGGAGCTGTATGCTGACTTCATCGCTGCTCAGATCAAGACTCTGTCCTTCCTGGCTTACATCATCCGCATCTATCAGGATCTGGTGGCAAAGTACTCCCAGCAGATGGTCAAAGGGATGCTGCAGCTGCTGACCAACTGCCCCTCCGAAACGGCCCACCTGCGCAAAGAGCTCCTGATCGCCGCCAAGCACATCCTGACGACTGACCTCCGTAGCCTGTTGAAGGTGTTTGGGGCTTTGAAAGTACATCTCTACATTGTACAATTAATTGCCTTCATGTTTACTTTAGATGTGGTGATAGGACCCTTGGCCTACAGTACCCTGGCGGACCTGGTTCACCATGTCAGACAGAACCTGCCCCTGAACGACCTGTCACTGGCTGTGCAGCTCTTCGCCAAGAACATCGACGACGAGTCCCTGCCCAGCAGCATCCAGACCATGTCCTGCAAGCTGCTGCTCAACCTAGTTGACTGCATCCGATCCAAGAGCGAACAGGAGAATGGCAATGGCCGAGACATCCTGATGAGGATGCTGGAGGTGTTTGTGCTGAAGTTCCACACCATTGCCCGCTACCAGCTGGTCACCATCTTCAAGAAGTGCAAGCCTCAATCCGAGATGGGTGTGGTGGAGACCGCGGCCCTCCCAGGGGTGCCTGCTACCCCCACCGCCCCGGCACCGCTACCCCCGCCTGCCCCGCCCACCCCGGTCACCCCCGCTCCCCCGACGTCCAGCTTCGACCGGCAGGGGGACAAAGACAAGGAGGACAAGCAGACCTTCCAGGTGTCGGACTGCCGCAGCCTGGTGAAGACTCTGGTGTGTGGAGTGAAGACTATCACATGGGGCATCACTTCCTGCAAAGCCCCCGGAGaaGCTCAGTTCATCCCCAACAAGCAGCTGCAGCCCAAGGAGACACAGATTTATATCAAACTGGTGAAATACGCCATGCAGGCCCTGGATATCTACCAGGTGCAGATTGCTGGCAACGGGCAGACGTACATCCGTGTTGCCAACTGCCAGACCGTCAGGatgaaggaggagaaggaggtgcTGGAGCACTTTGCGGGGGTCTTCACCATGATGAATCCCCTCACCTTCAAAGAGATCTTTCAGACCACAGTGCCCTACATGGTGGAAAGGATCTCAAAGAACTACGCCCTGCAGATTGTGGCCAACTCCTTCCTGGCTAACCTGTCCACGTCGGCCCTCTTCGCCACCATCCTAGTGGAGTACCTGCTGGAGCGCCTCCCCGAGATGGGCTCCAACGTGGAGCTATCCAACCTCTACCTCAAGCTCTTCAAGCTGGTCTTCGGCTCTGTCTCGCTCTTCGCTGCTGAGAACGAGCAGATGCTCAAGCCCCACCTGCATAAGATTGTCAACAGTTCCATGGAGCTGGCCCAGTCTGCCAAGGAGCCCTACAACTACTTCCTGTTACTGCGGGCGCTGTTCCGCTCTATCGGTGGGGGCAGCCATGACTTGCTGTACCAGGAGTTCCTGCCGCTGCTGCCCAACCTGCTGCAAGTGCCGGTGCGACTCAGCTCCCTGCTGCCCTACCTGCCCATGCTGATGGACCCTCTGGTGTCAGCACTCAATGGCTCCCAGACCCTGGTGAGCCAGGGCCTTcgcacgctggagctctgtgtGGACAACCTGCAGCCCGACTTCCTGTACGATCACATCCAGCCCGTCCGAGCCGAGCTCATGCAGGCTTTGTGGCGCACGCTGCGGAACCCAGCGGAGACCATCTCCCATGTGGCGTACCGGGTGCTGGGGAAGTTCGGCGGCAGCAACCGCAAGATGCTGAAGGAGTCGCAGAAGCTGCAGTACGTGGTGACGGAGGTTCAGGGCCCCAGCATCACAGCGGAGTTCACCGACTGCAAGGCCTCCGTCCAGTTGCCCATGGAGAAGGCCATTGAGACCGCCCTGGACTGCCTGAAGAGCGCCAACACTGAGCCGTACTACCGACGCCAGGCCTGGGAGGTCATCAAGTGCTTCCTGGTGGCCATGACCAGTCTTGAGGACAACAAGCACGCCCTGTACCAGCTGCTGGCACACCCCAACTTTACAGAGAAGTGTATCCCCCCCGTGATCATCTCGCACCGCTACAAGGCCCAGGACACGCCGGCCCGCCGCACCTTCGAGCAGGCCCTGACCGGGGCCTTCATGTCAGCCGTCATCAAGGACCTGCGGCCCAGTGCCCTGCCCTTCGTGGCGAGCCTCATCCGGCCCTTTCTGCTGCAGTGCTACCAGCAGGGCAGCCAGCCCAGCACAGCCATGTTCCACAGTGAGGAGAATGGCTCCAAGGGCATGGACCCGCTGGTGCTGATTGATGCCATCGCCATCTGCATGGCCTACGAGGAGAAGGAGCTGTGCAAGATCGGGGAGGTGGCGCTCGCTGTGATATTTGATGTGGCCAGCATCATCTTGGGCTCCAAGGAGAGGGCCTGTCAGCTGCCCTTGTTCTCGTACATCGTGGAGCGGCTGTGTGCCTGCTGCTACGAACAGGCCTGGTATGCCAAGCTGGGCGGCGTGGTCTCTATCAAGTTCCTGATGGAGCGGCTGCCGCTGATCTGGGTCCTGCAGAACCAGCTTACCTTCCTGAAGGCCCTGCTCTTCGTCATGATGGACCTCACTGGGGAGGTGTCCAATGGGGCGGTGGCCATGGCCAAGACCACGCTGGAGCAGCTGCTGGTGCGTTGTGCCACACCGCtgaaagaggaggagaagacgGTGGAGCTGCTGGCAGCACAAGACAAGTCCTTCCACATGGTGACCCACGACCTGGTGCGCGAGGTCACCTCCCCCAACTCCACTGTGCGCAAGCAGGCCATGCACTCCCTGCAGGTGCTGGCCCAAGTCACCGGCAAGAGCGTCACCATTATCATGGAGCCACACAAGGAGGTGCTGCAAGACATGGTGCCCCCCAAGAAACACCTGCTGCGCCACCAGCCGGCCAACGCTCAGATTGGGCTGATGGAGGAGGACGCTGCCCTGATGAAGCTGCCCTGTTATAAGAGCCTGCCGTCCCTGGTGCCCCTGCGCATTGCTGCCCTGAATGCTCTGGCCGCCTGCAATTATCTGCCTCAGTCCAGGGAGAAAATAATCGCGGCTCTCTTCAAGGCTCTTAACTCCACCAATAATGAACTGCAGGAGGCCGGGGAGGCCTGCATGCGCAAGttcttGGAGGGAGCCACTATCGAGGTGGATCAGATCCACACTCACATGCGCCCCCTGCTGATGATGCTGGGCGATTACCGCAGTCTGACCCTCAACGTCGTCAACCGGCTCACCTCAGTCACTCGCCTCTTCCCCAACTCCTTCAACGACAAGTTCTGTGATCAGATGATGCAACATCTCAGGAAGTGGATGGAGGTGGTGGTGATCACCCACAAAGGCGGCCAGCGCAGTGACGGCAGTCCTGCCTTGGAGGGCGTCGAGGAGATGAAGATCTGCTCTGCGATTATCAACCTGTTCCACCTGATTCCAGCTGCCCCCCAGACGCTGGTGAAGCCGCTGCTAGAAGTGGTGATGAAGACGGAGCGCGCCATGCTGATCGAGGTGACGCCCCGGCCGGCGGGCAGTCCGTTCCGGGAGCCTCTGATTAAGTTCCTGACGCGCCACCCCTCTCAGACCGTGGAGCTGTTCATGATGGAGGCCACGCTCAACGACCCGCAGTGGAGCCGCATGTTCATGAGCTTCTTGAAGCACAAGGACGCCAAACCTCTTCGGGATGTGTTAGCTGCCAACCCCAATCGCTTTGTGACCCTGCTGCTCCCGGCAGGGCCCCCGCCAGCGGTGCGGCCAGGGTCCCCTTCCACCAGTACGGCACGACTTGACCTGCAGTTCCAGGCCATCAAGATCATCAGCATCATCGTGAAGAATGATGAAGGTTGGCTGGCTGGGCAGCACTCTCTGGTCAGTCAGCTGCGGCGTGTCTGGGTCAGCGAGGCCTTCCAGGAGCGCCACCGCAAAGACAACATGGCCGCCACCAACTGGAAGGAGCCCAAGCTGCTAGCATACTGCCTGCTCAGCTACTGCAAACGTAACTTCTCAGAGATCGAGCTGCTATTCCAGCTGCTCAGGGCGTTCACAGGCCGCTTCCTGTGCAACATGACCTTCCTGAAGGAGTACATGGAGGAGGAGATCCCCAAGAACTACAGCATCGTACACAAGAGGGCGCTCTTCTTCCGTTTTGTCGACTTCAATGACCCCCACTTCAGCGACGAGCTCAAGGCTAagGTATTGCAACACATCCTGAATCCAGCCTTCCTGTACAGTTTtgagaagggggagggggagcaaCTCCTGGGACCCCCCAACCCCGAGGGGGACAACCCAGAGAGCATCACCAGCGTCTTCATCACCAAGTTCGCCACCCTGCTGGTGGAGCACGCCCCCCACCACATCCACGACAACAACAAGAGCCGCAACAGCAAGCTGCGCCGCCTCATGACCTTCGCCTGGCCCTGCCTGCTCTCCAAGGCCTGCGTGGACCCGGCCTGCAAGTACAGTGGCCACCTGCTACTGGCGCACATCATCGCCAAGTTTGCCATCCACAAGAAGATCGTCCTGCAGGTGTTCCACAGCCTGCTGAAAGCCCACACCATGGAGGCGCGGGCGATAGTGCGCCAGGCCATGGCCATCCTGACGCCCGCCGTACCGGCCCGCATGGAGGACGGCCACCAGATGCTGACACACTGGACCCGCAAGATCATCGTGGAGGAGGGCCACACAGTGCCCCAGTTGGTGCACATCCTTCACCTCATTGTGCAGCACTTCAGGGTGTACTACCCTGTCAGACACCACCTGGTCCAGCACATGATCAGTGCCATGCAGAGGCTGGGCTTCACCCCCAGTGTGACCATCGAGCAGAGGAAGCTGGCCGTTGACCTTGCTGAGGTCATCATCAAGTGGGAGCTCCAACGGATCAAGGACCAGCAGccGGAGTCGGACGGCGATGCCAGCAGTAGTGGTGAGGGCACCAGCACAGCGTCCGGGGCGGTGAAACGCGGGCTCTCTATGGACTCCGGACAGGACGTCAAGCGTCAGTCAATCCCGGGGACGGAGGCTCTCCTCACGAAGCCGGTGGAGAAACAGCACACGGACACGGTGCTCAATTTCCTCATCAGGATCGCCTGCCAGGTGAACGACAGTGCCAGCGCGGCGGGCTCCCCGGGAGAACTGCTGTCTCGTCGCTGTGTTACACTGATGAAAACGGCCCTCCGTCCCGACATGTGGCCCCGGGCTGAGCTCAAGCTGCAGTGGTTCGACAAGCTGCTCATGACTGTGGAGCAGCCCACCCAGGCCAATTTCCCCAACATCTGCACCGGACTGGAGATCCTGAGTTTCCTGCTGACAGTGCTGCAGTCCCCAGCCATCCTGGCTCACTTCAAGCCCCTGCAGCGTGGCATCGCGGCCTGCATGACCTGCGCCAACACCAAGGTCCTGAGAGCTGTCCACACGCTGCTGTCTCGCCTCATGAGCATTTTCCCCACCGAGCCCAGCACTTCCAACGTGGCCTCCAAGTACGAGGAGCTGGAATGCCTGTATGCAGCTGTGGGGAAAGTAATCTACGAGGGGCTCACCAACTACGAGAAAGCCACCAGTGCCAACCCCACACAGCTCTTTGGCACCCTGATGATCTTAAAGTCCGCCTGCAGCAACAACCCCAGCTACATCGACCGCCTCATCTCTGTGTTTATGCGATCTCTGCAGAAGATGGTGAGGGAGCATCTGAATCCGCAGACCACCCCTGGGGCCACCGAGACCAGTACAGtgaCCAGTGAACTGGTGATGCTGAGCCTGGACCTGGTGAAGACGCGGATGGCCGTCATGAGCATGGAGATGAGGAAAAACTTCATCCAGGTCATCCTCACCTCACTGATTGAGAAGTCTCCCGACGCCAAGATCCTGCGTGCCGTGGTGAAGATTGTGGAGGAGTGGGTGAAAAACAACTCCCCCATGGCAACCAACCAGATGCCCAATCTCAAAGAGAAGTCCTTTTTGCTGGTGAAAATGATGACCTACATTGAGAAACGCTTTCCAGAAGACCTTGAATTAAATGCCCAGTTCTTAGACCTCGTTAACTATGTCTACAGGGATGAGAATCTGTCAGGAAGTGACATCACCTCCAAGCTGGAGCCTGCCTTCCTGTCAGGCCTGCGCTGTGCCCAACCCCTGATCCGTGCCAAGTTCTTCGAGGTGTTCGACAGCTCCATGAAGCGCCGTGTCTATGAGAGGTTGCTCTACATCTGCTGCTCGCAAAACTGGGAGGCCATGGGCAGCCACTTTTGGATTAAGCAGTGCATTGAGCTACTCCTGGCTGTGTGTGAGCGAGGGACCACCATTGGCACGAGCTGTCAGGGGGCCATGCTGCCCTCCATCACCAACGTCATCAACCTGGCGGACAGCCACGACCGCGCCGCCTTTGCCATGGTGACTCATGTCAAGCAGGAGCCACGAGAGCGAGAGAACAGCGAGACCAAGGAGGAGGATGTGGAGATTGACATTGAACTGGCCCCTGGGGACCAAACCAGCACTCCCAAAACCAAGGAGCAAGCGGAGCGAGACACCGGGAACCAGCTACACATGCTGACCAACCGACATGACAAGTTCCTGGATTCACTTCGAGAGGTCAAGACTGGAGCGCTGTTGAATGCCCTGGTCCAGCTGTGCCACATCTCCACTCCTTTGGCAGAGAAGACCTGGATCCAGCTGTTCCCCCGACTTTGGAAAATCCTCTCTGACCGGCAGCAGCATGCCCTGTCGGGAGAGATCAGCCCCTTCCTGTGCAGCGGCAGCCACCAGGCACAGAGGGACTGCCAACCCAGCGCCCTCAACTGCTTTGTGGAGGCCATGTCCCAGTGCGTGCCCCCCATCCCCATCCGGCCCTGTGTGCTCAAGTACCTGGGCAAGACCCACAACCTGTGGCTGCGCTCCACCCTCATGCTGGAGCAGCAGGCCTTTGAGAAGGGCCTCAGCCTGCACATCAAACCTAAGCAGACCACCGAATTCTATGAGCAGGAGAGCATCACTCCTCCCCAGCAGGAGATCCTAGACTCACTGGCGGAGCTGTACTCTCTGCTACAGGAAGAGGATATGTGGGCTGGGCTCTGGCAGAAACGCTGCAAGTTTCCCGAGACCAGCACTGCCATTGCATATGAGCAGCATGGCTTCTTTGAACAGGCCCAGGAGAGCTACGAGAAGGCCATGGAGAAAGCGCGCAAAGAGCACGAGAGAAACAACGCATCCCCAGCCATCTTCCCAGAGTATCAGCTGTGGGAGGACCACTGGATCCGCTGTTCAAAGGAGCTGAATCAGTGGGAGGCGCTGACAGAGTATGGCCAGTCTAAGGGCCACACCAACCCCTACCTGGTCCTGGAGTGTGCCTGGAGAGTCTCCAACTGGGCAGCTATGAAGGAGGCCCTGGTCCAGGGCAGTAACACTGTAACGAACAAGCAGAATGAGGAGCAGCAACTCAACTACATCGAGAGGCTGGTGGAGATGGCCAGCAGTCTGTCGATTCGTGAGTGGCGCAGGCTGCCCCACATTGTGTCCCATGTACACACTCCCCTACTGCAGGCCGCCCAGCAGATCATCGAGCTGCAGGAAGCCGCCCAGATCAACGCCGGCCTGCAGCCCGCCAACCTGGGCCGCAACACCAGCTTGCACGACATGAAGACCGTGGTGAAGACCTGGAGGAACCGGCTGCCCATCGTGTCTGACGACCTCTCGCACTGGAGCAGCATCTTCATGTGGAGGCAGCACCACTACCAAGCCATCGTCACGGCCTATGAGAACAGCACCCAGCACGACCCCAGCTCCAACAACGCCATGCTGGGCGTCCACGCCTCAGCCTCCGCCATCATCCAGTACGGCAAGATCGGCCGCAAGCAGGGCTTGGTCAACGTGGCACTGGACATCCTGAGCCGCATccacaccatccccaccgtgcCCATCGTTGACTGCTTCCAGAAGATCCGCCAGCAGGTCAAGTGCTACCTGCAGCTGGCGGGGGTCATGGGCAAAAACGAGTGCATGCAGCTTTGA

Function

symbol description
trrap Predicted to enable transcription coregulator activity. Involved in neuromast hair cell development and startle response. Predicted to be part of NuA4 histone acetyltransferase complex and SAGA complex. Predicted to be active in nucleus. Used to study autosomal dominant nonsyndromic deafness. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 75. Orthologous to human TRRAP (transformation/transcription domain associated protein).

NR:

description
PREDICTED: transformation/transcription domain-associated protein isoform X2

GO: NA

KEGG:

id description
K08874 TRRAP; transformation/transcription domain-associated protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018429 True 8835 mRNA 0.59 60 10496873 10562962

Neighbor

gene id symbol gene type direction distance location
AMCG00018426 NA coding upstream 56216 10432190 ~ 10440657 (+)
AMCG00018423 bri3 coding upstream 154449 10333521 ~ 10342424 (+)
AMCG00018425 NA coding upstream 197319 10299003 ~ 10299554 (+)
AMCG00018411 NA coding upstream 322577 10160464 ~ 10174296 (+)
AMCG00018414 pms2 coding upstream 337230 10150965 ~ 10159643 (+)
AMCG00018432 trrap coding downstream 11934 10574896 ~ 10609128 (+)
AMCG00018434 NA coding downstream 362074 10925036 ~ 10934367 (+)
AMCG00018435 LOC107699871,LOC105888715,LOC106589575,LOC106609787,LOC108274201,LOC107669229 coding downstream 395603 10958565 ~ 10975479 (+)
AMCG00018436 NA coding downstream 429195 10992157 ~ 10996021 (+)
AMCG00018433 NA coding downstream 485020 11047982 ~ 11053345 (+)
G116303 NA non-coding upstream 136970 10359682 ~ 10359903 (+)
G116302 NA non-coding upstream 139516 10355972 ~ 10357357 (+)
G116301 NA non-coding upstream 145311 10350964 ~ 10351562 (+)
G116300 NA non-coding upstream 151791 10344735 ~ 10345082 (+)
G116264 NA non-coding upstream 280084 10215387 ~ 10216789 (+)
G116354 NA non-coding downstream 175324 10738286 ~ 10739175 (+)
G116358 NA non-coding downstream 414060 10977022 ~ 10979685 (+)
G116374 NA non-coding downstream 498607 11061569 ~ 11083789 (+)
G116477 NA non-coding downstream 847843 11410805 ~ 11412070 (+)
G116479 NA non-coding downstream 852519 11415481 ~ 11415738 (+)
AMCG00018422 NA other upstream 204612 10257805 ~ 10292261 (+)
AMCG00018406 NA other upstream 450350 10044452 ~ 10046523 (+)
AMCG00018405 NA other upstream 484200 10004273 ~ 10012673 (+)
AMCG00018380 NA other upstream 883955 9606661 ~ 9612918 (+)
AMCG00018372 LOC106517353,LOC107388090,LOC103381742,LOC101078739,LOC103481046,LOC108270924,LOC108413555 other upstream 932309 9562061 ~ 9564564 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other downstream 689397 11252359 ~ 11256165 (+)
G116585 rbbp6,LOC107689611 other downstream 1403285 11966247 ~ 11970778 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other downstream 1926505 12489467 ~ 12500054 (+)
AMCG00018491 slc5a10 other downstream 1940061 12503023 ~ 12520331 (+)
AMCG00018498 NA other downstream 1980583 12543545 ~ 12611879 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000063_01240976_01328455 TRRAP coding CI01000063 null 1239382 ~ 1328688 (+)