AMCG00018434


Basic Information

Item Value
gene id AMCG00018434
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 10925036 ~ 10934367 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018434
ATGAAGATGATCCTGTTCAGGAGATTCAGAGTGTTAATCCTCATGGTCTTTCTGATCGCCTGTACCATGCACATCATGATCGACCTGCTGCCCAAGCTGGAGAAGCGGGCGACGGGACCGAGCACCGGCAACAGCGGCTGCTCTTGCTCCCACCGGCCGAGCGAGGAGCCGCAGAGCTGGGGCCAGCAGCGCGCCCGGGCGGGGGCTGAGTCGGGCTGGCCTAACAAGCACACGCTGAGgatcctgcaggatttcagcAACGAGCCCAGCTCCAACCTCAGCTCGCACTCCCTGGAGAAAGCGGACAAGACGGAGGCTTTCAAGAGCATGGAGCCGTACGCGCAGGATGGAGAGGGCAAGAGGCGCTTCATCCAGGAGGCGAGCGTCAATACGCACCTCCCCGGCGGAGGCGCCTCCAGGCTGGCGGCGCTGTTTGAACACTCGCTGTACCGAAGCGCTCTGCCGGCGCTGACGGAGGAAGACACCCTGTTCAACGTGAACACGGACATCAGGTTCAACCCCAAAGCAGCCGAGAATCAGGAATGGCAGAGTGAAGGGAACGAAGAGGAGGAGTACACCCCAACAGGGGAGCCCTCTGCAGACTCATACCCTAACTGGCTCAAATTCCACATTGGGATTAATCGATATGAACTGTACTCCAGACACAACCCAGTCATCGAATCCTTGTTGAAGGACCTCGTCTCTCAGAGAATCACCAGTGTTGCTATGAAGTCAGGTGGCACCCAACTGAAGCTCATCATGACATTCCAGAACTACGGCCAGGCGCTGTTTAAACCAATGAACTCACCCAAGCCCTGCCAGTCTCGCCCCAGCCTGAGCCAGGCAGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018434 True 849 mRNA 0.58 4 10925036 10934367

Neighbor

gene id symbol gene type direction distance location
AMCG00018432 trrap coding upstream 315908 10574896 ~ 10609128 (+)
AMCG00018429 trrap,LOC107699870 coding upstream 362074 10496873 ~ 10562962 (+)
AMCG00018426 NA coding upstream 484379 10432190 ~ 10440657 (+)
AMCG00018423 bri3 coding upstream 582612 10333521 ~ 10342424 (+)
AMCG00018425 NA coding upstream 625482 10299003 ~ 10299554 (+)
AMCG00018435 LOC107699871,LOC105888715,LOC106589575,LOC106609787,LOC108274201,LOC107669229 coding downstream 24198 10958565 ~ 10975479 (+)
AMCG00018436 NA coding downstream 57790 10992157 ~ 10996021 (+)
AMCG00018433 NA coding downstream 113615 11047982 ~ 11053345 (+)
AMCG00018445 NA coding downstream 197178 11131545 ~ 11139307 (+)
AMCG00018444 gid4,LOC107724729,LOC106601817,LOC107555661 coding downstream 208896 11143263 ~ 11151189 (+)
G116354 NA non-coding upstream 185861 10738286 ~ 10739175 (+)
G116303 NA non-coding upstream 565133 10359682 ~ 10359903 (+)
G116302 NA non-coding upstream 567679 10355972 ~ 10357357 (+)
G116301 NA non-coding upstream 573474 10350964 ~ 10351562 (+)
G116300 NA non-coding upstream 579954 10344735 ~ 10345082 (+)
G116358 NA non-coding downstream 42655 10977022 ~ 10979685 (+)
G116374 NA non-coding downstream 127202 11061569 ~ 11083789 (+)
G116477 NA non-coding downstream 476438 11410805 ~ 11412070 (+)
G116479 NA non-coding downstream 481114 11415481 ~ 11415738 (+)
G116546 NA non-coding downstream 794442 11728809 ~ 11818089 (+)
AMCG00018422 NA other upstream 632775 10257805 ~ 10292261 (+)
AMCG00018406 NA other upstream 878513 10044452 ~ 10046523 (+)
AMCG00018405 NA other upstream 912363 10004273 ~ 10012673 (+)
AMCG00018380 NA other upstream 1312118 9606661 ~ 9612918 (+)
AMCG00018372 LOC106517353,LOC107388090,LOC103381742,LOC101078739,LOC103481046,LOC108270924,LOC108413555 other upstream 1360472 9562061 ~ 9564564 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other downstream 317992 11252359 ~ 11256165 (+)
G116585 rbbp6,LOC107689611 other downstream 1031880 11966247 ~ 11970778 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other downstream 1555100 12489467 ~ 12500054 (+)
AMCG00018491 slc5a10 other downstream 1568656 12503023 ~ 12520331 (+)
AMCG00018498 NA other downstream 1609178 12543545 ~ 12611879 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004636 fam20cb coding NC_007123.7 CM002896.2 18234557 ~ 18343653 (+)
grasscarp (Ctenopharyngodon idella) CI01000063_01384163_01441190 FAM20CB, FAM20C coding CI01000063 null 1383198 ~ 1441349 (+)