AMCG00018435 (LOC107699871,LOC105888715,LOC106589575,LOC106609787,LOC108274201,LOC107669229)


Basic Information

Item Value
gene id AMCG00018435
gene name LOC107699871,LOC105888715,LOC106589575,LOC106609787,LOC108274201,LOC107669229
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 10958565 ~ 10975479 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018435
ATGGCCACGAGGCAAACCAGGGAACAGGAAACGCCCCCTGACTTCTTCTACTTCTCAGATTTTGAGAGACACAACGCAGAGATCGCCGCTTTTCATCTAGACAGGATCCTGGACTTCCGGAGAGTTCCTCCTGTTGCTGGGAGGTTGGTCAACATGACAAAGGAAATCCGTGACGTGACCAGAGACAAGAAGCTCTGGAGGACATTCTTCGTGTCTCCAGCCAACAACATCTGTTTCTACGGGGAGTGCTCGTATTATTGTTCCACGGAGCACGCGTTGTGTGGGAAGCCCGATCAGATCGAGGGCTCCCTGGCTGCCTTCCTCCCGGACCTGGCCTTGGCCAAACGCAAGACCTGGAGAAACCCCTGGCGCCGCTCTTACCACAAGCGCAAAAAAGCCGAGTGGGAAGTGGACCCCGATTACTGTGAGGAGGTCAAACAGACACCCCCCTACGACAGCGGCACACGTCTCTTGGATATCATGGACATGACCATCTTCGATTTCCTGATGGGAAACATGGATCGCCATCACTATGAAACCTTCGAGAAGTTTGGAAACGAGACTTTCATCATTCACCTCGATAACGGACGAGGGTTTGGCAAGCATTCCCATGACGAGATTTCCATTTTGGTGCCTTTAAGCCAGTGCTGCAGGGTGAAGAAATCAACTCACTTGCGCCTCCAGCTTTTAGCCAAGGAGGACTACAAGCTGAGCGGGCTGATGGAAGAGTCTCTGCTGAGGGACCGACTGACTCCCGTGCTCATCCAGCCCCACCTGGAGGCCATGGATCGCCGGCTGCGCATCGTCCTGAAGGTGCTGAGCGACTGCGTGGAGCGCGAGGGCTTTGACAGTGTGGTGGAGGATGACCTAGAACCCGACAGCACGCGTGACGCCACAGCCCCTCGGAGGTAG

Function

NR:

description
PREDICTED: extracellular serine/threonine protein kinase FAM20C-like

GO: NA

KEGG:

id description
K21958 FAM20C; extracellular serine/threonine protein kinase FAM20C

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018435 True 912 mRNA 0.55 8 10958565 10975479

Neighbor

gene id symbol gene type direction distance location
AMCG00018434 NA coding upstream 24198 10925036 ~ 10934367 (+)
AMCG00018432 trrap coding upstream 349437 10574896 ~ 10609128 (+)
AMCG00018429 trrap,LOC107699870 coding upstream 395603 10496873 ~ 10562962 (+)
AMCG00018426 NA coding upstream 517908 10432190 ~ 10440657 (+)
AMCG00018423 bri3 coding upstream 616141 10333521 ~ 10342424 (+)
AMCG00018436 NA coding downstream 16678 10992157 ~ 10996021 (+)
AMCG00018433 NA coding downstream 72503 11047982 ~ 11053345 (+)
AMCG00018445 NA coding downstream 156066 11131545 ~ 11139307 (+)
AMCG00018444 gid4,LOC107724729,LOC106601817,LOC107555661 coding downstream 167784 11143263 ~ 11151189 (+)
AMCG00018443 NA coding downstream 190464 11165943 ~ 11170854 (+)
G116354 NA non-coding upstream 219390 10738286 ~ 10739175 (+)
G116303 NA non-coding upstream 598662 10359682 ~ 10359903 (+)
G116302 NA non-coding upstream 601208 10355972 ~ 10357357 (+)
G116301 NA non-coding upstream 607003 10350964 ~ 10351562 (+)
G116300 NA non-coding upstream 613483 10344735 ~ 10345082 (+)
G116358 NA non-coding downstream 1543 10977022 ~ 10979685 (+)
G116374 NA non-coding downstream 86090 11061569 ~ 11083789 (+)
G116477 NA non-coding downstream 435326 11410805 ~ 11412070 (+)
G116479 NA non-coding downstream 440002 11415481 ~ 11415738 (+)
G116546 NA non-coding downstream 753330 11728809 ~ 11818089 (+)
AMCG00018422 NA other upstream 666304 10257805 ~ 10292261 (+)
AMCG00018406 NA other upstream 912042 10044452 ~ 10046523 (+)
AMCG00018405 NA other upstream 945892 10004273 ~ 10012673 (+)
AMCG00018380 NA other upstream 1345647 9606661 ~ 9612918 (+)
AMCG00018372 LOC106517353,LOC107388090,LOC103381742,LOC101078739,LOC103481046,LOC108270924,LOC108413555 other upstream 1394001 9562061 ~ 9564564 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other downstream 276880 11252359 ~ 11256165 (+)
G116585 rbbp6,LOC107689611 other downstream 990768 11966247 ~ 11970778 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other downstream 1513988 12489467 ~ 12500054 (+)
AMCG00018491 slc5a10 other downstream 1527544 12503023 ~ 12520331 (+)
AMCG00018498 NA other downstream 1568066 12543545 ~ 12611879 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000113_02791507_02858943 FAM20C coding CI01000113 null 2790558 ~ 2859353 (-)