AMCG00018464


Basic Information

Item Value
gene id AMCG00018464
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 11515955 ~ 11526795 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018464
ATGTTCGGCTATCTGCCTGCAGAAGAGGCCCAGTCTTCTGCAAGCTGCCAGGTGCTCCCCGCAGGAGGGGCTCAGTCTCCCGTGGGCGCCTTACCTCTTAACACCATGGACACAACACAGGCCTACAACACCTCCTCTCCTGGGTCTCCCGGGCCCACCCGCTCACACTCCCTGGCCGTCACAGACATCGTAGTGCTGGTGCTGTACTTCCTGTTTGTCCTGGCTGTGGGGCTCTGGTCCATGTGGAAGACAAAGAGAAGTACAGTGAATGGGTACTTTCTAGCTGGGAAAAGCATGGTTTGGTGGCCAGTGGGGGCCTCTTTGTTTGCTAGTAATGTTGGGAGTGGGCATTTCATAGGCCTGGCAGGATCAGGGGCTGCATCGGGCATCGCAGTAACCGCCTACGAGTGGAATGGCATGTTTATTGTCCTGCTTCTGGCCTGGATGTTCCTGCCCATTTACATCGCCTCTGGGGTGGACATGTACGCAGGAGCGGTGTTTATCCAGCAGGCCCTGCAGTGGGATCTGTACCTGGCCGTGGTGGTGCTCCTCTTCATAACAGCTCTATACACAGTGGCAGGTGGCCTGGCTGCAGTCATCTACACTGACGCCCTGCAGACTGTCATCATGCTGATCGGGGCGCTGATCCTGATGGCCTTCAGTTTTACAAAGGTGGGGGGCTGGGAGGGGCTGCATGACAGGTACGCGGACGCCATCCCAGCTGTCCGAGTCCCAAACAGTAGTTGTGGGCTGCCCCGGGAGGACGCTTTCCACCTGTTCCGTGAccctgtgacctctgacctgccCTGGCCTGGAATCCTACTGGGGATGACCATTCCATCCATTTGGTACTGGTGCACAGACCAGGTGATCGTCCAGAGGTCTCTGGCAGCCAAGAACCTGTTGCACGCCAAGGGGGGCTCCCTGTTCGCCTCCTACCTGAAGGTGCTGCCTTTCTTCATGATGGTTTTGCCAGGGATGATCAGTAGGATCCTCTTCCCAGACGAAGTGGCGTGTGGGGATCCAGAGGTGTGCCAAGAGGTGTGTGGAAATCCCATGGGCTGTTCTGACATTGCGTACCCCAAACTAGTGATGGAGCTACTACCCTCAGGGCTGCGTGGGCTAATGATGGCGGTAATGATCGCCGCTCTGATGTCCTCCCTCACCTCCATCTTCAATAGCTCCAGCACCATCTTCACCATGGACCTGTGGAGACACTTGCGCCCCCTAGCCACTGAGTGGGAGCTCATGGTTGTAGGCAGagtGTTCGTCCTGGCACTGGTagcagtgtcagtgctgtggaTCCCGCTGGTTCAGGCCAGTCAGGGAGGGCAGCTGTTCATCTATATCCAGTCCATTAGCTCCTACCTGCAGCCTCCAGTCGCTGTCGTCTTCATTGCTGGCTGCTTCTGGAGGAGGACCAACGAGAAGGGTGCATTCTGGGGCCTGCTGCTGGGACTGCTGGTCGGCTGCGTCAGGATGGTCCTGGACTTCATATTCCCGGTCCCACAGTGCTTTGACCCAGACATGCGACCCGACATCATCAAGAACATACACTACCTGTATTTCTCCATCATCCTGTCGGTCTTCACTCTGGCTGTGGTCGTGGTTGTCAGCCTGGCCACCAAGGAGCTCCCACAGTCAAACATCAGCCGCCTCACTTGGTTTACACGGTTTGACCCAGCCGAACCGCACAAAGTGGAAATCTGCATGTCGCCCAGTGATacaggggctgctgggagagACGAGGAAGGCAGTGGAGGGGAGGAAAGGCTGAGAAACGGAGAGAGGCACCAGCAGAGGAAAGGTTCCTTCTCCACAGAGGCCAGCGAGAAAAAGGACTCCAAGCTGAAGTCGGTCATTCTGTGGGTGTGCGGGATGGAACGTCGTAAGGAAGGCACTGGCGTCGCCCCACTCCCCCCTGAGGTCACTGTGTGCTCGCTGGAGGAGGAACCCTGGCTGAAACACGTGCTCAACGTCAATCTCAtcgtgtgcatgtgtgctgcGGTTTTCCTGTTCGGGTACTTTGCCTAACAGGGCAGACCCCCCGCTCCCCACCCCCCGCCGGAAAAATCCACCGGATGGATGCTTTGTAGAGAAGCTGGACGTGTGAAAACCTTTAACAGTGTTACCGTGCCGCCACCATGGTGAACGATCATTGGAATTGCAGTGTCTCAGCAGTAGAGCCACATAAGTGTTAAGTGTGAGGCAATCCTGTTCTTAAAAAAGACTGAGCAAACAGACCAGGAAACTTGTCCTCTCCTTGTGAAATGTGACCCTGGGGAATTCTGGGACTGTCAAGAGCAGTGCACCACCTTAATCAAAGTTCACGTCAGGGTTCCAGGCTAACTGCAGTGCAAGAACAGCAATGGCTGACTTCTGCAGTAACCCCTCCATAAACTGAAATCATCAGGATCTTGgtcacaattgtatttttcttatataaAGCAGATGGtgcccagccctggtcctgcagcaCTCCCTGTGTCGGCTGCTTTTCCTTCCAGCCCTGTTGTCAGTTACTGCCCTGAGCCATCTCCACCTGTTTAAGCAGTGAAAACTATGGACAAGGTTGAAAACATTACTTCAGCTAAAAGTCCTATCAGGAGCTCGAACTACAAGCAGCAGACAAAGGGATCCCTCCATGAGCAGGGTTGGGAATAACTGAGATGAAGGGTGGGTGTGATATAAGAtgactgtttgtttgtgttttataaaatgaCTTTATTAGTTGCTAAGTGGACTGCTGGAAACCACTGACGTTCctgacaataaaaataaatacttacctTAATTGTCACCTTTCACCTTCCTGGAAAACTGCTCAAAGCCagtaaagatttaaaataaatatttcagttttaaaaagaaagtggtCAGAGCCAGAGTTTGAACTGGGCATGGCCAGTGTGGAGCAGCCTGGACAAAACTATGGTTTATCATTTTTTACTAATAATGAATGTTGGCTTCAGTACCCACAgacaacatttaaacaaacaaaaaaatactttaatagcAGCATCTTTTTTTGACACGATGCATATGACAAGCAGTCTTAGAATGTAATCATCAAATGAGTTATATAATTTAGAGATGAGTTCAATGCTTTAGATCAACAATTATATTTCTGATAAAgattttttctatattttttaaaatcacaaatacagTTGATGATTTCAAAACatgaattgaaataaaacaatgcacacCAAGTCCttccaataataattatttatatcaaaaacattattgttgttgaaaaCAATCGCTTCAAGAACAGAACTGTTGGAATAAAAAATAGcagtttaaatcaaaatatctgGA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K14391 SLC5A11, SMIT2, SGLT6; solute carrier family 5 (sodium/myo-inositol cotransporter), member 11

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018464 True 3327 mRNA 0.50 15 11515955 11526795

Neighbor

gene id symbol gene type direction distance location
AMCG00018462 grid2ip,LOC108274076,LOC108432200,LOC106589205 coding upstream 1613 11488147 ~ 11514342 (+)
AMCG00018465 NA coding upstream 63481 11450500 ~ 11452474 (+)
AMCG00018463 e4f1,LOC107758096 coding upstream 79755 11427683 ~ 11436200 (+)
AMCG00018456 mlst8 coding upstream 107148 11401958 ~ 11408807 (+)
AMCG00018451 LOC108432196,LOC105891623,LOC100699516 coding upstream 131399 11377899 ~ 11384556 (+)
AMCG00018468 NA coding downstream 69126 11595921 ~ 11606352 (+)
AMCG00018467 NA coding downstream 92578 11619373 ~ 11638050 (+)
AMCG00018470 NA coding downstream 150967 11677762 ~ 11678127 (+)
AMCG00018469 prkcb,LOC107722959,LOC105899995 coding downstream 229039 11755834 ~ 11817048 (+)
AMCG00018471 cacng3b,LOC107710002,LOC107590403,LOC107689612,LOC107719973,LOC107688095 coding downstream 328725 11855520 ~ 11900247 (+)
G116479 NA non-coding upstream 100217 11415481 ~ 11415738 (+)
G116477 NA non-coding upstream 103885 11410805 ~ 11412070 (+)
G116374 NA non-coding upstream 432166 11061569 ~ 11083789 (+)
G116358 NA non-coding upstream 536270 10977022 ~ 10979685 (+)
G116354 NA non-coding upstream 776780 10738286 ~ 10739175 (+)
G116546 NA non-coding downstream 202014 11728809 ~ 11818089 (+)
G116601 NA non-coding downstream 599655 12126450 ~ 12126699 (+)
G116603 NA non-coding downstream 612207 12139002 ~ 12142135 (+)
G116653 NA non-coding downstream 745794 12272589 ~ 12273496 (+)
G116654 NA non-coding downstream 751635 12278430 ~ 12278840 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other upstream 259790 11252359 ~ 11256165 (+)
AMCG00018422 NA other upstream 1223694 10257805 ~ 10292261 (+)
AMCG00018406 NA other upstream 1469432 10044452 ~ 10046523 (+)
AMCG00018405 NA other upstream 1503282 10004273 ~ 10012673 (+)
AMCG00018380 NA other upstream 1903037 9606661 ~ 9612918 (+)
G116585 rbbp6,LOC107689611 other downstream 439452 11966247 ~ 11970778 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other downstream 962672 12489467 ~ 12500054 (+)
AMCG00018491 slc5a10 other downstream 976228 12503023 ~ 12520331 (+)
AMCG00018498 NA other downstream 1016750 12543545 ~ 12611879 (+)
G116832 NA other downstream 1726548 13253343 ~ 13255794 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026259 slc5a11 coding NC_007114.7 CM002887.2 18655673 ~ 18675688 (-)
grasscarp (Ctenopharyngodon idella) CI01000034_04870434_04878415 SLC5A11 coding CI01000034 null 4870361 ~ 4878415 (-)