AMCG00018476


Basic Information

Item Value
gene id AMCG00018476
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 11956229 ~ 11966330 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018476
ATGGCTTCACAGTTGAACAGCACCTGGCACAACTCCTTCAGCCTCCCCTCTAACAACATTGAGACAAGCAGGTCTCGCACTGCCCTGCCACCCAGCACTTCCTGCAGACACATGACTAGACAGGGAAAAGAGGAGGACAACAGTGGGAGGGCGGAGGGGGTCAATGCCATTCACAGCCAGATCAGGGGTGGGCCCGGCAgcgaagaggaggaggaggatgaagggCCTTGTGACAAAGCCAGCACTTCATCGCAGCAGCGCAGCACCAGCTGGTACTCCCGCCGGCTGAGGACAGAACTGTGCTTCACTGGCACGCGCCTGGCTAGCAGGGGGATGGATGTTGAGGCGCCGCGAACAGCGAGCCGTGCATGCTCCATACCGCCAGCTAATCGCCCCCCAAGCCCTCCCCAGCTCACCCCGGACAGCAGCCCTCGGGAGACGGGCTTTCAGTTGCATCCGAAAAGCCATAAATACACAGCGAAACTTTGCAAGCGCAACCCACCTCAGCTCTCGGCAACGCCATCTTGGAATCGGGGAGAGGTCGAGTTCACACAAATCTCCATTCTGGGTGACGTCACAGAGCGAGGAGCACCTGTTTGGGGATAtactggggggaggggggacagGCTACTAACATGTGACCTAGCCAACACGTCGCGACGCACGACAGTTCATAACGTCGCGGTACGTGCCCCCTGCGTTTACTCCTGGAAACCCCTGAGTGGCCGGAGGCGCCGCCATAGTGGTACAGAGAGGAGCGGAAAGCTGGAAGACGTTTCTTCGCACAGAGACGGACGGCAGATGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018476 True 807 mRNA 0.59 5 11956229 11966330

Neighbor

gene id symbol gene type direction distance location
AMCG00018471 cacng3b,LOC107710002,LOC107590403,LOC107689612,LOC107719973,LOC107688095 coding upstream 55982 11855520 ~ 11900247 (+)
AMCG00018469 prkcb,LOC107722959,LOC105899995 coding upstream 139181 11755834 ~ 11817048 (+)
AMCG00018470 NA coding upstream 278102 11677762 ~ 11678127 (+)
AMCG00018467 NA coding upstream 318179 11619373 ~ 11638050 (+)
AMCG00018468 NA coding upstream 349877 11595921 ~ 11606352 (+)
AMCG00018475 NA coding downstream 1559 11967889 ~ 11987054 (+)
AMCG00018478 tnrc6a,LOC107601257 coding downstream 106775 12073105 ~ 12116828 (+)
AMCG00018477 dctn5,LOC107579625,LOC107590401,LOC107719975,LOC105899917 coding downstream 185059 12151389 ~ 12163807 (+)
AMCG00018481 NA coding downstream 220360 12186690 ~ 12187328 (+)
AMCG00018482 plk1,LOC102776063 coding downstream 229212 12195542 ~ 12202096 (+)
G116546 NA non-coding upstream 138140 11728809 ~ 11818089 (+)
G116479 NA non-coding upstream 540491 11415481 ~ 11415738 (+)
G116477 NA non-coding upstream 544159 11410805 ~ 11412070 (+)
G116374 NA non-coding upstream 872440 11061569 ~ 11083789 (+)
G116358 NA non-coding upstream 976544 10977022 ~ 10979685 (+)
G116601 NA non-coding downstream 160120 12126450 ~ 12126699 (+)
G116603 NA non-coding downstream 172672 12139002 ~ 12142135 (+)
G116653 NA non-coding downstream 306259 12272589 ~ 12273496 (+)
G116654 NA non-coding downstream 312100 12278430 ~ 12278840 (+)
G116667 NA non-coding downstream 321239 12287569 ~ 12319488 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other upstream 700064 11252359 ~ 11256165 (+)
AMCG00018422 NA other upstream 1663968 10257805 ~ 10292261 (+)
AMCG00018406 NA other upstream 1909706 10044452 ~ 10046523 (+)
AMCG00018405 NA other upstream 1943556 10004273 ~ 10012673 (+)
AMCG00018380 NA other upstream 2343311 9606661 ~ 9612918 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other downstream 523137 12489467 ~ 12500054 (+)
AMCG00018491 slc5a10 other downstream 536693 12503023 ~ 12520331 (+)
AMCG00018498 NA other downstream 577215 12543545 ~ 12611879 (+)
G116832 NA other downstream 1287013 13253343 ~ 13255794 (+)
AMCG00018520 slc29a4,LOC107703421,LOC107737679,LOC107581724 other downstream 1341568 13307898 ~ 13346877 (+)

Expression


Co-expression Network