AMCG00018477 (dctn5,LOC107579625,LOC107590401,LOC107719975,LOC105899917)


Basic Information

Item Value
gene id AMCG00018477
gene name dctn5,LOC107579625,LOC107590401,LOC107719975,LOC105899917
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 12151389 ~ 12163807 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018477
GTTTTATAATAACGCAAGACAGGTTAAATTCAGTTTAGAAATCTTTGAAAAAGCACTTGGAAGCACCGGGAGTGGTATCCATTAAAGACACAGGGAAGTGTTGTTGGTGTGAAGTGTTTTGAGTGAGGTGGACGGATCGGTGCTCTGCAAGCACGGTCTGCCCGGGTTGTGATGTGACGTATTTCCTGCGGAAAGAGGAAGCAGGGGAGTGGGTGCAGTGGATGACAGCGCCACAGCAAAACATAACACAATAGTTCATAATTTTCATCAATTTATACTCACTTGCAATTTAGTAATCTTTCTGCCATGGAGCTGTGTGAAATTCTCTACAACAAAGCCGAATACATCGAAACGGCTTCTGGCAACAAAGTCAGCCGGCAGTCGGTGTTGTGTGGCAGTCAGAACATCGTGCTCAATGGCAAaACCATTGTAATGAATGATTGCATCATCCGGGGGGACCTGGCGAACGTCAGGGTTGGGCGACACTGTGTCATTAAGAGCCGCAGCGTGATCCGGCCGCCCTTTAAGAAGTTTAGCAAAGGTGTGGCCTTCTTCCCCCTGCACATCGGAGACCACGTGTTCATCGAGGAGGACTGCGTGGTCAACGCCGCTCAGATCGGCTCCTACGTCCACATTGGGAAGAACTGCGTCATTGGCCGGCGGTGTGTTCTCAAGGACTGCTGCAAGATTCTGGACAACACTGTCCTGCCGCCGGAGACAGTGGTCCCTCCCTTCACGGTCTTCTCCGGCTGcccagGCCTGTTCACAGGAGAGCTGCCAGAGTGCACCCAGGAGCTGATGATAGACGTCACCAAAAGCTACTACCAGAAGTTCCTGCCCCTCAGTCAGATTTAATGCCCCCCAGCCAGTGTTTAAAAAGGACCAATCATCAACCCCTTGCCCAAATGGTACCCACCTGTTGCTGCTGTGTGAAGGTGGAAGTGCCAGTGTGTGTTAATGCAGAGAGACGATTCTGCCCAGGACTGGGTTTATCCACCACAGGACCTTCTGTGGGCAGCCCACTCTCGGCTCTcaagaaagaagagaaataaCACAAACCACAAACTGAAGTCATGTCAagtctgtatttattatgtatggGAACCTGGTTCCTCCACTGTCTTGTCAATTCAACACTAAAGTGTAACTCATgattttggaaaacaaagagTCATAAAGGGGAGCTATTGCAAACAAATgcttgttattaaaaaatatataaaatacccaaaagtctatatatatatatatatatatatatatgtggattTGAATCCTGTGCTTTTCAGTCTGATAGCTCAGTCCTGACGTACTAAAGATGGTAGCTTAATTTCAAGGCCCGTGTATGATGAGAGATTGTCTCTAGGCAATCTCATtgtacagcacaatacaatgGGAAAATTAATACCAAGATAATTCTACAGCAGTTTATTATCTTATCCAGGGGTAAAATAGCTCCTTGATGAACTGAATAACAAGTTAAATCCCCCCAGATGGCCTATTCAAACTGAGTGTGGTCTGAGGTGGCGGAGGACCTTTTGCAGGAGAGCCCCAAGCGAAACTGGCTCTGGCTGGTGGAGAGCAGTTAGTGTACAGTATCATTTTTGCACCTGAATACTTCCTGAAGCTGCAATGGAGACTCAGAAATGTGCTCGAC

Function

symbol description
dctn5 Orthologous to human DCTN5 (dynactin subunit 5).

NR:

description
PREDICTED: dynactin subunit 5

GO: NA

KEGG:

id description
K10427 DCTN5; dynactin 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018477 True 1657 mRNA 0.47 7 12151389 12163807

Neighbor

gene id symbol gene type direction distance location
AMCG00018478 tnrc6a,LOC107601257 coding upstream 34561 12073105 ~ 12116828 (+)
AMCG00018475 NA coding upstream 164335 11967889 ~ 11987054 (+)
AMCG00018476 NA coding upstream 185059 11956229 ~ 11966330 (+)
AMCG00018471 cacng3b,LOC107710002,LOC107590403,LOC107689612,LOC107719973,LOC107688095 coding upstream 251142 11855520 ~ 11900247 (+)
AMCG00018469 prkcb,LOC107722959,LOC105899995 coding upstream 334341 11755834 ~ 11817048 (+)
AMCG00018481 NA coding downstream 22883 12186690 ~ 12187328 (+)
AMCG00018482 plk1,LOC102776063 coding downstream 31735 12195542 ~ 12202096 (+)
AMCG00018483 NA coding downstream 71204 12235011 ~ 12270627 (+)
AMCG00018487 traf7,LOC107719978,LOC107601260,LOC107590399 coding downstream 130170 12293977 ~ 12312814 (+)
AMCG00018492 NA coding downstream 366751 12530558 ~ 12539267 (+)
G116603 NA non-coding upstream 9254 12139002 ~ 12142135 (+)
G116601 NA non-coding upstream 24690 12126450 ~ 12126699 (+)
G116546 NA non-coding upstream 333300 11728809 ~ 11818089 (+)
G116479 NA non-coding upstream 735651 11415481 ~ 11415738 (+)
G116477 NA non-coding upstream 739319 11410805 ~ 11412070 (+)
G116653 NA non-coding downstream 108782 12272589 ~ 12273496 (+)
G116654 NA non-coding downstream 114623 12278430 ~ 12278840 (+)
G116667 NA non-coding downstream 123762 12287569 ~ 12319488 (+)
G116725 NA non-coding downstream 536694 12700501 ~ 12700765 (+)
G116728 NA non-coding downstream 715779 12879586 ~ 12883914 (+)
G116585 rbbp6,LOC107689611 other upstream 180611 11966247 ~ 11970778 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other upstream 895224 11252359 ~ 11256165 (+)
AMCG00018422 NA other upstream 1859128 10257805 ~ 10292261 (+)
AMCG00018406 NA other upstream 2104866 10044452 ~ 10046523 (+)
AMCG00018405 NA other upstream 2138716 10004273 ~ 10012673 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other downstream 325660 12489467 ~ 12500054 (+)
AMCG00018491 slc5a10 other downstream 339216 12503023 ~ 12520331 (+)
AMCG00018498 NA other downstream 379738 12543545 ~ 12611879 (+)
G116832 NA other downstream 1089536 13253343 ~ 13255794 (+)
AMCG00018520 slc29a4,LOC107703421,LOC107737679,LOC107581724 other downstream 1144091 13307898 ~ 13346877 (+)

Expression


Co-expression Network