AMCG00018478 (tnrc6a,LOC107601257)


Basic Information

Item Value
gene id AMCG00018478
gene name tnrc6a,LOC107601257
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 12073105 ~ 12116828 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018478
ATGGTTGTGGCCGGATCCAAATGTGCCCGTCTATCAGGGCTGTTGGAGCTGGGTACATCCCGAGGCAGCCCCACCACCCACACACTGCCAACTCAATGGTACAAGATCATAAACACTCTGGAAAAGCAGCAAATCTTCTGTCTTCTCCGTGAGAATAAGAAGACAGACCCCAAACAGTTGTGTCTCTGCAGTTTCCTTAATGTGCTGCCTGATGTGAAGTCATGGGGCAACCGAGCAGAAACCGGTCCAGCCCTGGATTCCACCAGGACGAGTGAGCAGTGGAATGTGCCCCAGCCAGAACTGTGCACAGGCATGTGCCGCTCCGCTCCTGCTTCCTGGAGAGAATTGGAAGCTATAGCCACCAAAGAAGCTGAGGAGAAGCAAAACAGGGATATAGTGCAAGAAAGAGAAGAACAGTTGatggaagaaaggaaaaagagaaaagacgacaagaaaaagaaggaagCTGGTTTAAAGAAGgccactgaacaaaaaaacaaagTGCCAGAACATATCAAGTCCAGTTTAAGCCAGCCTCAGCCTGCCAACCCGAACAGCGGAACCTCCACTGTAACCAGCACTGTCAGCAATGCCAAGCGGGCCCCAGCCAGCAGCCAGCCGCAAGCCCCACCTCGATACCCGCCCCGAGAAGTTCCACCGCGTTTCCGCCAACACGAGCAGAAGCAGCTGCTGAAGCGCGGTCAGCCTCTCCCGGTTCTTGCTGCCAACCTGGGGACCCGAGCACAGCCCACTAACGGTCAGCTAGGGGGCGCTCTGCCAGTCAGCGAGGGACCGCTGCAGAACGGCACCAAGACCCAACACCCAGGCATGCCTCCCATACGGGATTTGGTCAGCCACTCCCCTAACCAGACagATTTGAATCACACTGGTCTGGGATCTCATTATGAAAATTCCCACTGGGGTTCTGGATCACCTGGCAGCGACTTGAACACCAACTGGGACAAAGTTATCGTAGACGGCTGTGACAAGGAAGCCTGGCCTTCTATCACTGGTAGTGACCCAGAGTTAGCCTCAGAATGTATGGATGCTGACTCTGCCTCAAGCTCTGGGTCGGAGAAAAACCTTAGTATAATGGCTTCTGGGAACATTGGTGGCGACAGCGATGGCAATAGACACGGCAATGGACATGGTTCTCATTTTATGGTTGCGAACGGCGGCAATAATGTGGGCAATGGGAGTATTAAGGGTCCGTGGGGCACACCCCATGGCTCGATGCTAAGCACATGTCAAGGCCCTGGGGAGAATCCCAACGGCAAGCTAACAGAAAGTAGCCAtggtaaattaaatgcatgggGTACCCTAGGTTCCTCAACCAATGGAGGTATAAATCCAAGCACTTTGAACCCAAATGCCAACCATGGTGCCTGGCCTGTTTTGGAAAACAGTGGGCAAAATCCACATGGGCCGGTGGGGAATGGGAATGGTGGCACCAATATTCAACGTAGCACCATAGGTCAATCGCCCAGCGGTCAGAGTTTTAACTCTAAGATGGGCATCTCAGCCCACACTTCCTGGGGGAGCCTCCAGGACAACAACTCTGAATCTGAAGTCAATGGTACAAGTAAGGTTTCGTTAAGCGAGCAACCTCAAAACCTTAACACTGAAATGAATGGACCAAATAACACTACTAACATGATGACCTCTAGTTTACCAAACTCTACTGGTTCAATGCAGATGAACGAACTGCCCACGGGGCATCGAGCCTGGCGTGTGGGCTCAGGGAGCTCTCCGCAGCTCCAGGCCTCTTCAGTTTCTAATGGCACTTCCATTTCTCAGAAGAGCAACAGCGATGGAATGAACGGCGGGTCTTATGGCACGGCATGGGGAGCTCCCACAGGCACTAACTACTCTGGAGACAAATGCCCAGTCCCTAAAGGCCAAGCTGTGGGCGACACTGTGAATGCAACTCTAATGCAGTCTGGGATGAATGGAtccactgctgctgcttcttttaagaataataataacggGGTCGGGAATCGTGGAGGAGGATGGGACTCTGGGGCAGCCTGGGGAGCAGGCAATGGTGTCACCCCCACGAGGATCCCTCGCCCCTGGGGAAGTGCCTCATCTTCCTcgtcttcctcttcctcatcctctTCTTCAAACACTGGCACTAAGGTCTCCAATGGGGAGTGGAACAATCTGCCCAGCAACAATCAGCATTCCAACGACGGCGCTCATGGGAGCAGCAAGGGAACGACCGGATGGAAGTCCCTGGAGGACGACGCTCTGGGGGTTGGGGGCTGTGTTGGGCAGGTGTCCCAGACAGGCGAGCAGGGAAGCATGTGGGCCAAATCAGCGGGCAGCGAGGGCAGTGGCGAGAGCACAGGCAGCCGCAGTGACAGAATGAGTGGAGATGGGTCCCGTACCCGTGACCGGAGAAAGGCGAACCCCCAGGGCCTGGTCCAGACAGTGCTGTCCAGGAATGACCTGGATCCCCGCGTCCTGTCCAACACTGGCTGGGGCCAAACCCCAGTCAGACAGAACACCGCCTGGGACACGGAGGCCGCCTTAGCCGCTGACAAAAAAACTGACAATGGGACAGAGGcctggggtgggggtggctCAGTCTCCCAGGCATCTAACTCAGGGGGATGGGGGGACAGGCCCAGCACCAACAGCAGTGATACCTCATCAGTATCTGAGTGGGCCGACAGAAAGCCTGCCTCTGGGTGGGGAGACACCAAAGGCTCTAGCAGCCAGGGTGGATGGGAGGAGAGTTCTGCTGCTACAGGAGTGGGCAAGAGCAATCAGTCATGGGGGAATAGCAAGGAAGACAAGTCTTCTACATGGAATGATGCACAAAAGGTCAAACAGGGATGGATGGAAGGACAGAAGCCCAACCAAGGCTGGGGGGCACCTGCCAGAGGTGAGGGATGGGGAAGTGAGGCCCAACGGGGGAACCACTGGGGGGAGGCTCCCAAGCCAGTCTCAGGTGGCTGGGAAAGTGACGGTGACCGCTCTGGGTCTGGCTGGAGTGAGCCGGCTCGGTCCGGTAACAATAATACCTGGAAGGGAAACGGAGGCGGGAACACTCCCAACACTAGTGGCCCCACTGGCTGGGGGGAGCTCAGCAAGGCCAACAATCAGAGCCAGGGCTGGGGAGAGCCTCCTAAACCCAGCCACCCCAACTCGGGCTGGGGCGACAGCGCCAAGCCCCATAACTCCCCAGACTGGATCAAACCCCAGGACCCTGCCCCAGCCCCAAACTCCTCTTCCTGGGGTGGGGCTGCCCCTCAGTCTGGGCCCCCTGCCCCAAACAAGTCATCAGGCTGGCTAGGGGGCCCCATCCCTGCCGCTCCCAAAGAAGAGGAGTCAACGGGCTGGGAGGAGCCTTCCCCTGAGTCCATCAGGCGCAAGATGGAGATTGACGATGGCACCGCCGCCTGGGGGGACCCCAACAAGTACAACTACAATAACGTGAACATGTGGAACAAGAACAGCGTGTCTGAGCCGGAAGCACAGGCACCCCCGCCGCcgccacagcagcagcagcagcagcagcagccaccaCCATCCCAGCCGCCCCCAAGTGCCATACCCAGCAAGGACAAGACCGGCAGCTCGGGATGGGGGGAACCATACGCACCGCCACCGCCTAAAGTGGAGTCCTCGTGGGGGGAGTCCTCTGCCCCTCCTGTGGCTGTGGACAATGGCACGTCAGCCTGGGGCAAGCCCATGGATACAGGTACGAGCTGGGAGGAGCCGGGTGGGGAGAGCGCAGGTACAGGCAGCTGGAGCGGCGCCACGGTGGGACAGCAGCCACAACACAAACCCGGACCCAAACCTATGCAAGACAGCTGGTGTGGCGAAGAGATAAGCATGTCTGGGACAGGGCAGCCAAgctgggaggaggaggatgtgGAGATCGGGATGTGGAAGAACAACCCACCCCAGGAGATGAGCCCATCTGGGAACTGGCCTTCATACATGAAGAAGATGCCTCCAAAGgGCAATGTTAAAGGAGGTAGTAGCAAGCAGGATGATGCGTGGATGAATCAATTTGTGAAGCAATTTAACAACAATATTGGTTTCTCTaggGAATCTTCTGAAGAAGCCCTGAAGAGCAATAAGATGGAAATGCCTACAGGGATGATGGCCGATAAACGCATGGACGTGGACAAGCACGGCCTGAATATGGGAGAGTACAACGGTGTGATCGGCAAGAGCCCCGGGTCACGCCACCACATTTCCAAAGAGTCTTCCATGGAGCGCAGTCCCTATTACGATAAGCtatctctgtccctgtctggTCAAGATGGCATTGTAGCAGAAGAGCCCCcaaatgtacagttttcatCTAATCAGAATATGAAGCTTCCCCCTTCGAGCAATGCACTACCTAATCAGAGCCCTGGCAACATGTCTGGGCTGAACCTCCAAAACTTGAATTCGGTTAGACAGAATGTCAATCCCAACATGTACAGTGGCAGTAATGCAGCAGCACAAGTCAGGAGCACACAGCAGCCTCCAGCACAACCTCTGAACTCATCTCAGCCTAATCTCCGCGCTCAAGTGCCTCCTCCATTGCTTTCCCCTCAGgttccGCCATCATTGTTAAAGTACCCTCCAAACAACGGAGGTCTGAATCCTCTGTTTGGGCCGCAGCAGGTCGCTATGCTAAACCAGCTCTCCCAGTTAAACCAGCTCACCCAGCTTTCCCACATCTCTCAGCTGCAGCCTATAGTTCCCAGTGGTTACAGTCGGCTCTGCTTTCTGTCACAGCGGCTCCTGATCCAGCAGCAGAAGGTACAGAACCAGAGGAACATGCCCCTGGGTCGGCAGCAGCAGGAACAGCAGggtcgCCCTCTTAGCCAGTCTCACCAGATGATGCAGCCCCCGCGCCACCTGGACCCCTCCCTGATGAAGCAGCAGCCTTCCCCCCAGCCGCCCTCTCTGCACCAGCCCGGCCTCAAGTCCTACCTGGAGAACTTCATGCCCCCGAACGCTCCTGACTTGCAGAAAGAGCAGAGCGCACTCAGTTCGTTCAGTAACTTCCCTCTAGGTGGGTTTTCTTCCCATCCTAACCTAGGTCAGTCAGACTCTCTCTTGCACCAAGCTGTGAAGCACCCCATGATGCCTGGCTCAGACGTTTCAGGCTGTTACCCCGTTGGCAGTAATCACAGTCATAGCCTTCTTAGCCCTCCCTTGAGCAACGGCCATGCTGGGCCAGTGTCGCCCATCCACCACCGGGCCGGGAGGACGTTTGCCGGCCACGAAAACAACAGTATGTCGGCAAGAGGCTTGAATTCAAACTTGAATGTAAACAACCTGGATATTGGCAGTATTAGTTTTAAAGAGCCACAGTCCCGGCTGAAGAAATGGACTGCCTTGGACATTTCCGTTAACTCCCCATTAGATCAAAACTCCAGCAAACCTGGTGCTATTTCCTCCGGGCTGAGGCTAGATGATTCTCCCTTTGGTCCGTTTGATTACATGAACACCAGTAGCTCTCCTGTCAGTCCTCCTGGATCTGTGGGAGACGGCTGGCCCAACCGTGCCAAATCGCCTCATGGCTCCAGCAATGTCAACTGGCCACCAGaATTTCGCCCTGGTGAGCCTTGGAAAGGATATCCAAACATTGACCCTGAAACTGACCCTTACGTCACTCCCGGCAGTGTGATTAATAATCTCTCCATTAATACTGTCCGGGATGTTGACCACCTCAGGGACAGGAACAATGGGTCAACCTCATCTCTGAACACCACGCTGCCTTCAACTAGTGCCTGGTCATCCATTTGTGCCTCCAACTACAGTGGTTCCCTCAGCAGTACAGCACAAAGCACTTCGGCCAGAAACAGTGACTCCAAATCCACATGGACTCCTGGTGCAGTCACTAACACCTCTCTGGCTCACGAGCTGTGGAAGGTTCCTCTGCCACCGAAAGGCATCACCGCTCCGTCCCGCCCGCCCCCCGGCCTGACTGGCCAGAAGCCCCCCTCATCCTGGGATAACAGCTCACTGAGACTAGGGGGGGGCTGGGGTGGCTCTGACTCCAGATACACCCCCGGTTCCAGTTGGGGCGACAACAGCTCAGGGAGAACAACGAATTGGCTTGTTCTCAAAAATCTCACACCTCAGATCGACGGCTCCACTCTGCGGACTCTCTGCATGCAGCACGGTCCACTGATTACATTCCACCTGAACCTGCCCCACGGCAACGCTGTCGTCTGCTACAGCTCAAAGGAGGAGGCAGCCAAGGCACAAAAATCTCTGCACATGTGCGTTTTAGGGAACACTACTATTCTTGCTGAGTTTGCTAGTGAAGAGGAAATTAGCCGTTTCTTTGCACAAGGCCAGTCCATGACCGCCTCGCCCAGCTGGCAGGCTCTGGGGGCCTCTCGGAACCGGATCGGCTCCATGGAGAGCTCCCACCCGTTCTCCAACCGCAATGATCCAAATCACTGGAACGGTGCTGGGCTGTCGGGGGCCGGCAGTGGAGACCTCCACGGCACCTCTCTGTGGGGTGCTCCGAATTATTCCACTAGCCTGTGGGGGAACCCCAGTGGCAGCGAGGGCCGGGGCATGAGCAGCCCATCTTCCTTCCTCCCGGTCGACCACTTGGCCGGAGGGGGAGACTCCATGTAAAACACCTTTCACCTTCTGACTTAAGAACTGTGACCTCAAcatgtaataataacaagaaaacaaatggcacTAGTtcggactttttttttttttttccacctacaaaaaaaagaaaaaaaaaaatgaaaaaaaaagacggGGTCACCCTGTGGAAACAAAAGTTACTTTCTCTGCACATTTTTTCCACTTTGTTTTAGCCCAAAACATATCAGTTTGAATACTTGAATCATGCAGGCCAATATTATAATGTGAAAGGATATATTTACACTTCCAGGTAGTGCTCTTCatacgagaaaaaaaaaaactgcttcaaATGAGCTCATTTAATGTGTATTCATcatgtttatttgaattccaattttttatttttttggtctttttattgcatttgtttgctGACAATGTTGGAGTATGAGCTTTTTTAACTTTGCACTGAATGTCGTTTTTCTCAGTATAATCTGCAATATCGAGGGAGCCGACCGTTCCAGTGTAGTGTTTACTCAAGGATGTTCTTAAAAAGTGTGCGCTCTACTATGCCTTGATATACGCCTACCTTATTGTGGTATTGTGGAGTTTAAGATCAAGATATAAATGCTGACTTAGGATTATTtgatgatattaaaaaaataataataaagtattgcaccaatttttgtgtttaaaactaAAGAATTTAGCTCTGCAGTGTAAAAAACTGTAGCCACAGCTGTGACTTGCAAACCCAACCTGCAAGCCAGGGGGAACAGCACTTTCAAATAGgctttcaattttgttttggaGGTGCCCATGTTGTGCCCTCTTGTTTACAGACTtttttgaggaaaaaaagtgtttactcttccttcattttaaaataaaaatatataaaaatttaaaaaaaatataaaaagaaaaattacttaaaaaaataataataataaaaaaaaaatttaaaaaaaaaaaaggaaaaaagatggaaaaattATATTGAGGATGAAGACGAAGCTTTCTATCTCTGGGAATACTGATCAGTGTTTGGCcatgtttggtttttgtttttttgttttttgttttgtttttttatcttattCCTCTCGTCTGCTAAATAACGAGCATGGTTCTCAGGAAATATACCCAGTTTCCCCCAGTAGAAACTCCTGTAGTTTCTTGTAGGAAAAATCCAACTTTTAGCACTGAAACTACTTATAGTTCTGTAAGTTTTTCTCTGCCAAATAACTGCTTTAAGCTGGAGATGTTCTACATATTGCTTTCAGAAATGCTGTCTTTATTAGTGAGTGGAGGTGGTTTGCTGAATCGCtatgtttataatttttttttcttccccttatTCCCATTATTGAGTGGCTCAATGTTTTTTGCTCTTTGTGACTGTCGAATTTAACTGTtgtactttaaaagaaaaagaaacgaCAAAATCAGTAACTATGCATACTGTAACCAGGTATATGGCTTACagaatcatttttttgttgtaagaaatgttttaaatgtttaagaagTAATTGCAAATGTTCTTTGCAAAAATTCTTTTCACCTTGCCACAAATGgtgttctaaaaaaaaaaaaaaaa

Function

symbol description
tnrc6a Predicted to enable nucleic acid binding activity. Acts upstream of or within nuclear-transcribed mRNA poly(A) tail shortening. Predicted to be active in P-body and nucleoplasm. Human ortholog(s) of this gene implicated in familial adult myoclonic epilepsy 6. Orthologous to human TNRC6A (trinucleotide repeat containing adaptor 6A).

NR:

description
PREDICTED: trinucleotide repeat-containing gene 6A protein

GO: NA

KEGG:

id description
K18412 TNRC6, GW182; trinucleotide repeat-containing gene 6 protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018478 True 8182 mRNA 0.51 25 12073105 12116828

Neighbor

gene id symbol gene type direction distance location
AMCG00018475 NA coding upstream 86051 11967889 ~ 11987054 (+)
AMCG00018476 NA coding upstream 106775 11956229 ~ 11966330 (+)
AMCG00018471 cacng3b,LOC107710002,LOC107590403,LOC107689612,LOC107719973,LOC107688095 coding upstream 172858 11855520 ~ 11900247 (+)
AMCG00018469 prkcb,LOC107722959,LOC105899995 coding upstream 256057 11755834 ~ 11817048 (+)
AMCG00018470 NA coding upstream 394978 11677762 ~ 11678127 (+)
AMCG00018477 dctn5,LOC107579625,LOC107590401,LOC107719975,LOC105899917 coding downstream 34561 12151389 ~ 12163807 (+)
AMCG00018481 NA coding downstream 69862 12186690 ~ 12187328 (+)
AMCG00018482 plk1,LOC102776063 coding downstream 78714 12195542 ~ 12202096 (+)
AMCG00018483 NA coding downstream 118183 12235011 ~ 12270627 (+)
AMCG00018487 traf7,LOC107719978,LOC107601260,LOC107590399 coding downstream 177149 12293977 ~ 12312814 (+)
G116546 NA non-coding upstream 255016 11728809 ~ 11818089 (+)
G116479 NA non-coding upstream 657367 11415481 ~ 11415738 (+)
G116477 NA non-coding upstream 661035 11410805 ~ 11412070 (+)
G116374 NA non-coding upstream 989316 11061569 ~ 11083789 (+)
G116358 NA non-coding upstream 1093420 10977022 ~ 10979685 (+)
G116601 NA non-coding downstream 9622 12126450 ~ 12126699 (+)
G116603 NA non-coding downstream 22174 12139002 ~ 12142135 (+)
G116653 NA non-coding downstream 155761 12272589 ~ 12273496 (+)
G116654 NA non-coding downstream 161602 12278430 ~ 12278840 (+)
G116667 NA non-coding downstream 170741 12287569 ~ 12319488 (+)
G116585 rbbp6,LOC107689611 other upstream 102327 11966247 ~ 11970778 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other upstream 816940 11252359 ~ 11256165 (+)
AMCG00018422 NA other upstream 1780844 10257805 ~ 10292261 (+)
AMCG00018406 NA other upstream 2026582 10044452 ~ 10046523 (+)
AMCG00018405 NA other upstream 2060432 10004273 ~ 10012673 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other downstream 372639 12489467 ~ 12500054 (+)
AMCG00018491 slc5a10 other downstream 386195 12503023 ~ 12520331 (+)
AMCG00018498 NA other downstream 426717 12543545 ~ 12611879 (+)
G116832 NA other downstream 1136515 13253343 ~ 13255794 (+)
AMCG00018520 slc29a4,LOC107703421,LOC107737679,LOC107581724 other downstream 1191070 13307898 ~ 13346877 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000046_06145016_06162787 TNRC6A coding CI01000046 null 6145016 ~ 6162787 (+)