AMCG00018481


Basic Information

Item Value
gene id AMCG00018481
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 12186690 ~ 12187328 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018481
ATGTCTCTGACCGTGAAAGACAAGACCACCGTCCGCCTGGTGTTCTTCGGGGCGGCGGGGGTCGGCAAGACGGCGCTCATCCAGCGGTTCCTGCACGACCGCTTCGAGCACAAGTATAAGCGCACGGTGGAGGAGCTGCACAGCAACCAGTACGACATCGACGGGGTCAAGATCCAGATCGACATCATGGACACCAGCGGCAGCTACTCCTTCCCGGCCATGAGGAAGCTGAGCATCCGCAACGGGGACGCGTTCGCCCTGGTGTACTCCATCGAGGACCCGGAGTCCTTCGAGGAGGTGCGGCGCCTGCGGGACGAGATCCTGGAGATCAAGGAGGAGGAGAAGTTGGTTCCCATCGTCGTGGTGGGCAACAAGATGGACCTGGAGAACCAACGCGGGGTCCCCGCCGTGGACATCCTGCCCACCGTGGAGCTGGACTGGAACGCGAACTTCCTGGAGGCTTCGGCCAAGTCCGGCGAGAACGTGGTGGGGGTGttcaaggagctgctgcagcaggTCAACCTGCCCAGCCGCCTGAGCCCGGCGCTGCGGAGGCGCAGGGAGACCATCCCCAAAGACAACCTCGGCGTCCGCAAGAGACCGCCCATGAAAAAGACCAACAGCTGCACCGTCTCCTAA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018481 True 639 mRNA 0.63 1 12186690 12187328

Neighbor

gene id symbol gene type direction distance location
AMCG00018477 dctn5,LOC107579625,LOC107590401,LOC107719975,LOC105899917 coding upstream 22883 12151389 ~ 12163807 (+)
AMCG00018478 tnrc6a,LOC107601257 coding upstream 69862 12073105 ~ 12116828 (+)
AMCG00018475 NA coding upstream 199636 11967889 ~ 11987054 (+)
AMCG00018476 NA coding upstream 220360 11956229 ~ 11966330 (+)
AMCG00018471 cacng3b,LOC107710002,LOC107590403,LOC107689612,LOC107719973,LOC107688095 coding upstream 286443 11855520 ~ 11900247 (+)
AMCG00018482 plk1,LOC102776063 coding downstream 8214 12195542 ~ 12202096 (+)
AMCG00018483 NA coding downstream 47683 12235011 ~ 12270627 (+)
AMCG00018487 traf7,LOC107719978,LOC107601260,LOC107590399 coding downstream 106649 12293977 ~ 12312814 (+)
AMCG00018492 NA coding downstream 343230 12530558 ~ 12539267 (+)
AMCG00018497 epn2,LOC107738009,LOC104959799 coding downstream 432032 12619360 ~ 12648880 (+)
G116603 NA non-coding upstream 44555 12139002 ~ 12142135 (+)
G116601 NA non-coding upstream 59991 12126450 ~ 12126699 (+)
G116546 NA non-coding upstream 368601 11728809 ~ 11818089 (+)
G116479 NA non-coding upstream 770952 11415481 ~ 11415738 (+)
G116477 NA non-coding upstream 774620 11410805 ~ 11412070 (+)
G116653 NA non-coding downstream 85261 12272589 ~ 12273496 (+)
G116654 NA non-coding downstream 91102 12278430 ~ 12278840 (+)
G116667 NA non-coding downstream 100241 12287569 ~ 12319488 (+)
G116725 NA non-coding downstream 513173 12700501 ~ 12700765 (+)
G116728 NA non-coding downstream 692258 12879586 ~ 12883914 (+)
G116585 rbbp6,LOC107689611 other upstream 215912 11966247 ~ 11970778 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other upstream 930525 11252359 ~ 11256165 (+)
AMCG00018422 NA other upstream 1894429 10257805 ~ 10292261 (+)
AMCG00018406 NA other upstream 2140167 10044452 ~ 10046523 (+)
AMCG00018405 NA other upstream 2174017 10004273 ~ 10012673 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other downstream 302139 12489467 ~ 12500054 (+)
AMCG00018491 slc5a10 other downstream 315695 12503023 ~ 12520331 (+)
AMCG00018498 NA other downstream 356217 12543545 ~ 12611879 (+)
G116832 NA other downstream 1066015 13253343 ~ 13255794 (+)
AMCG00018520 slc29a4,LOC107703421,LOC107737679,LOC107581724 other downstream 1120570 13307898 ~ 13346877 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location