AMCG00018501 (LOC107376712,LOC106516530,LOC103393184,LOC108242978)


Basic Information

Item Value
gene id AMCG00018501
gene name LOC107376712,LOC106516530,LOC103393184,LOC108242978
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 12784691 ~ 12819143 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018501
ATGACTGCTGTCTGTGACCAGTGGACACCTTCCTTAACTACCTGCTGCACCTGGTTCGAGCACGTCAGCATGCTGGTCATCCTCCTGAACTGCGTGACTCTGGGTATGTTCCAGCCCTGCGAGGACCTCAAGTGTCAGTCCGATTGGTGCACCATCCTGCAGgCATTTGATGACTTTATTTTTGCCTTCTTCGCTGTGGAGATGGTCATCAAGATGTTGGCTCTGGGGATTTTTGGGCAGAAATGTTACCTGGGTGATACGTGGAACCGTCTGGATTTCTTCATCGTCATGGCAGGGATGATGGAGTACTCTTTAGACGGCCACAATGTCAGCCTGTCTGCCATCCGCACTGTTCGTGTGCTCAGACCTCTCAGAGCCATTAACAGAGTTCCCAGTATGCGAATACTGGTGACCCTGCTCTTAGATACCCTGCCTATGTTAGGCAATGTCCTTCTGCTTTGTTTCTTCGTTTTCTTTATATTTGGAATCGTCGGAGTGCAACTGTGGGCCGGTCTGCTGAGAAATAGGTGTTTTTTAGAAGACGTAAAAACGGTTTACAATTTGTCCTTAAGCCCTTACTATAAGCAAGAGGAAGGGGAAGACAACCCCTTCATCTGCTCCACCATCAGAGACAATGGCATGCTTCGCTGCAACAACATTCCCCGACTCAAAGAGAACGGCGTGGAGTGCTTCCTCAGCATGGACTTTGAAGGCCACGCCCCCTATGGCCTTGACCTGGCCACCAAGAACGGGTGCGTCAACTGGAACCAATATTACAACGTATGCAAGACTGGGGAACTCAACCCGCACAAAGGGGCTATTAACTTTGATAATATTGGATATGCCTGGATTGCTATTTTTCAGGTGATAACTTTGGAAGGATGGGTGGACATCATGTATTATGTTATGGATGCTCATTccttttacaattttatatattttatattgcttaTAATAGTCGGCTCCTTCTTTATGATTAACCTGTGCCTGGTTGTGATCGCAACCCAGTTCTCGGAGACAAAACAGAGGGAGAATCAGCTGATGCAGGAGCAGCGTGCCCGCTACCTGTCCAACGACAGCACCCTGGCTAGCTTCTCAGAGCCGGGCAGCTGCTACGAGGAGCTGCTCAAGTACATCAGCCACCTGTACCGCAAGGTGAAGCGCAGGGTGGCACGGCTCTACAGCACCTGGCAGAACAAGAGGCGGAAGAAAGTCAACCCAAACGGCTTGGGTGGGGCAGGTGGTGTGAATGGGCACAGCCGGCGGCGGCGCAACAAGCGACGCATCCGCTCCATCCACCACCTcatccaccaccaccaccatcaccaccaccaccactatcACATCAGCAACGGCAGCCCCTGCGGCAGCCGGGGAGCCTCGGAAATCTGCGACGTCCTGGAGATGAAGACCGTGAAAGCAGGCAACCAGTTGATGCTGCAGCCCCCATCCCCCAACCTGCAGAGCTCCTCATCTGGCACAGAGTCAGTCCACAGCATCTACCACGCCGACTGTCATTTCCAGGGGCCCCAGGTCAGGCGCAAGTCTTCCAGTATGGCCGGGAACATGCGGCTGATTGGTGGTCTCAATGGGGGCATGAACTACCCCACCATCGTCCCCTCTATGGCCTGCAGCCGAAACAGCACGACCCCCAAGAACAAGGGCAAGAAGAGCAGCTCTCACCCTGCGAGCCTCAGCCGAGGATCAGGCAACCTCAGCATTCCTGACCCTTATGGGAAGCTGCACCAGCTCGTTGGGGAACACGGGGTGTGCCGAGGGTCCAGCCGCCTCTCGGGCCTGAGTATACCCTTCCCTGTGGGCAGCTCTGTGCCCAGCCGGCTGTCCTGTGAGCTGGTGAAGTGCCCGTACTGTGCCAGCGCCCTGGAGAAACCCGACCTGGATCTCAGCGACTCTGACAGCGGAGACTCGGACGCCGACGTGGTCTACGAGTTCAACCAGGAGCTGCGGCACGGGGCCGAACACAAGGGCTGCCACCCCAGCCGGCAGCGGAAGCAGAAGGGGAAGAACCGCGTGGTACACTGCTGGAATGTGTTCTGCAACAAACTGAAACGCATCGTAGacagtaaatattttaaccGCGGGATTATGATCGCCATACTGATCAACACTCTGAGCATGGGCATCGAGTACCACGAGCAGGGCTTCAGTCGTCTTCAATCATCACAAAATAATGTTAGCAGGATTCCCTGGGTGGTTATAAAGGAAGGCTATTACTGTAACTGTCAGTGTAAA

Function

NR:

description
PREDICTED: voltage-dependent T-type calcium channel subunit alpha-1H-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018501 True 2253 mRNA 0.54 9 12784691 12819143

Neighbor

gene id symbol gene type direction distance location
AMCG00018500 NA coding upstream 46623 12714107 ~ 12738068 (+)
AMCG00018497 epn2,LOC107738009,LOC104959799 coding upstream 135811 12619360 ~ 12648880 (+)
AMCG00018492 NA coding upstream 245424 12530558 ~ 12539267 (+)
AMCG00018487 traf7,LOC107719978,LOC107601260,LOC107590399 coding upstream 471877 12293977 ~ 12312814 (+)
AMCG00018483 NA coding upstream 514064 12235011 ~ 12270627 (+)
AMCG00018502 cacna1h,LOC108430011 coding downstream 17081 12836224 ~ 12878881 (+)
AMCG00018503 znf598 coding downstream 66044 12885187 ~ 12904501 (+)
AMCG00018507 drg2 coding downstream 115453 12934596 ~ 12943295 (+)
AMCG00018508 NA coding downstream 139569 12958712 ~ 13031788 (+)
AMCG00018506 NA coding downstream 213863 13033006 ~ 13043686 (+)
G116725 NA non-coding upstream 83926 12700501 ~ 12700765 (+)
G116667 NA non-coding upstream 465203 12287569 ~ 12319488 (+)
G116654 NA non-coding upstream 505851 12278430 ~ 12278840 (+)
G116653 NA non-coding upstream 511195 12272589 ~ 12273496 (+)
G116603 NA non-coding upstream 642556 12139002 ~ 12142135 (+)
G116728 NA non-coding downstream 60443 12879586 ~ 12883914 (+)
G116765 NA non-coding downstream 85957 12905100 ~ 12958552 (+)
G116769 NA non-coding downstream 113797 12932940 ~ 12934564 (+)
G116775 NA non-coding downstream 227974 13047117 ~ 13048094 (+)
G116790 NA non-coding downstream 310595 13129738 ~ 13215352 (+)
AMCG00018498 NA other upstream 172812 12543545 ~ 12611879 (+)
AMCG00018491 slc5a10 other upstream 264360 12503023 ~ 12520331 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other upstream 284637 12489467 ~ 12500054 (+)
G116585 rbbp6,LOC107689611 other upstream 813913 11966247 ~ 11970778 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other upstream 1528526 11252359 ~ 11256165 (+)
G116832 NA other downstream 434200 13253343 ~ 13255794 (+)
AMCG00018520 slc29a4,LOC107703421,LOC107737679,LOC107581724 other downstream 488755 13307898 ~ 13346877 (+)
AMCG00018537 radil,LOC107725399,LOC107722964,LOC107590699,LOC107564693 other downstream 1178766 13997909 ~ 14022806 (+)
G117033 NA other downstream 1227116 14046259 ~ 14049153 (+)
AMCG00018538 LOC103397138,LOC107554284,LOC100698873 other downstream 1322234 14141377 ~ 14145995 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000046_04136250_04185791 CACNA1H, CACNA1HA coding CI01000046 null 4135855 ~ 4185848 (-)