AMCG00018503 (znf598)


Basic Information

Item Value
gene id AMCG00018503
gene name znf598
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 12885187 ~ 12904501 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018503
GCGGACCAATAACACCGACGGACAAGCGGAAGAGGGCGGATAGCGAGGGCGCAGTGTGCTCCGAGGTGCTCTGATGGGGGTGAATGTGTATTTCATGCTCATACGTGGAATTATCCCAGGTCCGACACGATGATCTCAGCTTTGTGGGGGGAGATTGACCCCAAAGAAAGCACAGGCTCTTCTAGCCTCAGCAGTGAGGTTGCTGAATTTCCCCCAACAGTCAATCAGAATGAGATTCAATGGCCGGTGCAACCAGCTCCTGCTGAGGACATTGAGGAGGTGGAGAGTGAGgAGGAAGGCACTGACCTCTCAGATATGCTGCAGGCTGTGGCAGAGAGCGCCGCTCCTGTGAAGAGCCAGCAGCTGGGGGAGCCCGACCTGACGTTGGCCCAGCGGAGAGCCGTGCTGCTGCAGCAGTACAGGACCAGGCCTCTGGTGTTCCTGGAGCGCTACCAGGCTCAGCTGAGGCCCGAACACCTGGGGTCCTTCGCTCACCTCCGTTCCGACTGCCGGGCCCAGCACTACTGCAGGGAGGTGGAGAAACGCGCCTCCAACCAGGCCAAGAGAACCAGGGTCCGCAACCACCGCTACGCTGCCCTCAGAGCCCTTCAGCAGGCCGGCCAGTATTTCAGTGAGGATGAGATGCGAGCCCGGGAGCCTCTGCTGTACGAGCAGTACATCGGCCAGTACCTGAGCGACGAGGAGCTCCTGCAGCGCTCGGCGGAGGGGCCGGCGGGGGGGCCACAGGGCCTGGCAGACCTGCTGCTCCACTCCTACCAGGAGGGCCTGATCCAGAGCcggctgcagcagcagcaggacacAGAGGACGGGGCCGTGGAGgagacggaggaggaggaggaggaggaagAAGGCCATGTGTCGGGGGAGCAGCAGTGGGAGCCCAGCGCAGAGGAAAAAGCTCTGTTGAGGGAGGAGTTCGTCAGCCGAATGCACCAGCGCTTCCTCGATGGCAAAGACCGGGACTTTGACTACAGTGAGGTAGACGACAACCCAGATTATGACAATCTGGACATTGTGAGTCGGGATGAAGAAGAGCGATACTTTGACGAAGATGAACCAGAAGAAGACggggaggaggacgaggagatGCACTCGTCGGTGTTAAATTGTCAACCAAAGCCCACGATTCTGTCTTTACCAGCCATGGAGTCCAAGTCTGGAAAGGATACCGAGCGgagctgtgtgctgtgctgccagGAGCTCGACATCTTCGCGCTGGGGAAGTGCGATCACCCGGTGTGCTACCGCTGCTCCACCAAGATGCGGGTGCTGTGCGAGCAGAGGTACTGCGCCGTCTGCCGGGAGGAGCTCGATAAGGTCCTTTTCGTGAAGAAACTTGAACCTTTTGCTACAATACCTTCCCAACAGTTTCAGTGTGAGAAGAAGTATGATATTTACTTCAGCGATGCCACAATCTACGCACAGTTCAGGAGGATATTACAGTCTGAATGCCCACACTGTCCAGAGCCGAGGGTGTTTTCCAAGTTCGAGGAGTTGGAACAACACATGAGGAAACAGCACGAGCTGTTCTGCTGTAAACTCTGTGCAAAACATCTGAAGATTTTTACTCACGAGCGGAAGTGGTACAATCGCAAGGATCTGGCCCGACACCGGACACAGGGAGACCCTGACGACACGTCCCACCGCGGACACCCGCTCTGCAAGTTCTGTGATGACCGCTACCTGGACAACGATGAGCTGCTGAAACACCTGAGGAGAGATCACTATTTCTGTCACTTCTGCGATTCGGACGGCGCTCAGGAATACTACAGCGACTATGACTATCTTCGCGAACATTTCCGAGACCAGCACTACCTGTGTGAGGAGGGCCGCTGCAGCACAGAGCAGTTCACCCACGCCTTCCGCTCGGAGATCGACTACAAAGCCCACAAGGCCTCCTCTCACAGCAAGAACAGGGCCGAGGCGCGGCAGAACCGCCACATAGATCTGCAGTTCAGCTACGCGCCGAGACACCCGAGGAGGAACGAGGGTCTTGTTGGCGGAGAGGACTATGAGGAAGTGGACCGCTACAACAGGCACCCGAGGACAGGGAgaggaggggctcggggaggcCAGCAGAATCGAAGAGGAAGCTGGAGATATAACCGGGAGGAAGAAGACCGGGAGATTGCTGCGGCCGTCAGAGCCTCTGTAGCAGCCCGAAGACAGGAGGAAAAACGACAGGCTCAGGAACGAGAGCCCCCCAAACCCCGGAAAGAAGATGTAATGGACACTGAAGACTCCCGGACTGTCCGAAGTGTAGCCAAGCCTCCCAGTGAAGCTCCAGgtcCTAAGGATGCTGCTAAATCAGTAAATGGCATTAGATCTCTGAAAAGGGACGATTTCCCGATATTGGGTGCAACAGCAGCACCTGTTGCAAGcATGATCAAGCCGGCTCCCGTCAAGCTGAAAGAAGATGATTTCCCCAGTCTGTCCAGCACAGCTGTGTCTTCGCTCATGACTCCGGCCTACACTGCCCAGCCCAGGAAACTATCCTCCTTCCAAGAAGAGGATTTCCCAGCCTTAGTGTCCAAGATCAGACCTCAGAAACCATTTGGCAACACCTCAACTGCCTGGTCCAGTGCTGCAAACAAAAACCTGGTGAAACCCACCAAGATGGCTCCTCCTGCGTCCGTGAACCCgcctttctcctcctcttcctcctccaacccccctctcctctccatgACTTCCTCCCAGCCCAAGAAGAAGCCCACGCCAGGGAACAATAATAAAGCCCCCCCCAAAACCAGGTCCGCCTCTTCTGATGAAGACGATGACCTGACTGGCAGGACCACTCAGGAAATCCGCAGCGTGCCCACCATGCTGGACATCTCCTCCCTGCTGACGGGCAAGCCCTCTGCCCAGGCGGTGACCAAAGTGGGCAAACGGAAGAAGATGGGAGGGGAGAAGCAGACCCTGGCGGCGCCGTCAGCGGCGTCATCCTCCTCCCTGTCACCACCCCCTGGGGAAACCGCTGCCCTTGTGGCCCAGAAAGAGAACCGTCCCGAGACCAAGCAGCCCAATGCGAACCTCGCTAAACCCGTGCTCACAGCAGCCTCTAAAACCAACACCTGCGTCAACGGGCGCCCTGACAAGCCCCCGGAGAACAACAACACTATCGTTCCCAAGGAGCCGCCTGGACTGAAAAAGCAGGCAGCCCCAGATCCCTGCCCACTCcctgaagaagaagaggaattTCCTGCTTTAATGTCTAAAAAGCCCCCGCCAGGTTTCAAATCGGCCTTTCCAATGAAGGGCGGACAGGTCAGTGCAGCCCCTCTGCCTCCCCCAGGGTTAGTGGCACCGATTAGCAAACCACCTCCTGGATTCACTGGCATCCCCCTCAACGCCAACGTATTGGAGCCAACCATTCCAGCAGTCGAAGAGCCAGTGTATTCCCAGCCAGAGAATTTCCATCAGCGAAATTTGCAACTCATAGAATCCATTAAAAACTTCCTACAAAATGACGAGTCCAAATTCAACCAATTCAAAACCTACTCGGGCCAATTTAGACAGTGCCTGATTACTGCTGCACAGTACCACAAGAGCTGCAGAGACCTGCTGGGCGAGAACTTCAAGAGGATCTTCAATGAGCTGCTGGTTCTGCTGCCTGACACCAACAAGCAACAGGAGCTGCTCTCGGCCCACAGCGACTTCAAAGCGCTGGAGAAGGCGAGCGGCAGTAaacccaaaaaaaacaagaaaaacgcCTGGCAGGTCAACACCTCCAACAGCAACCTGGAGCTCGACTGCCAGATCTGCCCCACTTGCAGGCAGGTCCTGGCACAGAAGGACTTTGTGGCCCATAAAACCTTGCACATGTCCGATGATGACTTCCCCTCTCTCCAAGCTATCAGTAAGATCATTAGCTAACCCCTGCAGGCGGAAGAACAACAACGCAAATCTGCTCGTAACCAAGCAAGGTTGTTTCTGCACTATAGGAACCAGCGCTTACTGAAGGGGTGAGGAGGCAGTGCTAGGGATCAGGCGTGTGTTACTCAGAGTGATGAAACCGTTCAGGAAGCGATTCAATCTGATTTGGGGGAAAAAGctgttagtgtttttttgtttgttcgttcTTTCGTCCCCCCACAATGCGCAAGATCAATTCAGAGCAATCAACATCCACAGATTGTCGATGCATACAGACCTGCCCTCTCACCTGGCACTGGCGACTCTGCTCCCCCaacattttgctgtatgtttgatAAGATTAATACCAATTTCAAGTTAAAAGCAGAAACTTAAATGACATGGAAAGGGATGCGTTTGATATTTACTTGAAAGCGCAAGGTAGTTAAGTTCTGGCaagttctttgttttgtttgttttcctgggaAGGCGTGAACACGTGCAGATGTTTGTCTCGAAACTCAATCCTGTAAATTCcgttgtaaaaacaaaatatttaatttcactttttcaacgttttccatttttgttgtgaaatgtatatacagcAAAGGCATAAAGTATGATGCTCAGATTTAGACTTGGAGCATCCGGTAatcttttataatttatttaactttttattttccatagtTTTCTCTAGCTAGCCTCAATAGCTTAACACCACTGTTTATACAAACTAAGATCTAACACTGTAATCTTACTTTATAAACCCATCATTGTTATGGAGATGATGATGATCTTAAGAAGTttgaaaaaggtttaaaatatacacGTTGATTGTAAGTTTTAGACTTCAGTATATTTGCAGGATACGCATGCATGCTTTTTGAAAGGATATATAAAGATGATATAACTGGTTTCTACTGTATGGCTGGACCTGCAAACAAAGTATAACCAACACAGTGCAGCTGGCCGTGTTTTGGCACAAGCTACGACCCTTGTGAAATGAATGGCTTAAGCTCCCAGCCAAGTACATGGTACTTTGCTCTGATAATAGATTAACAGTGAGTGCAGAAGCGTTTTCCCTTCTTAATGCATCAGagctttaaatatttgacaCCTTTACAacactatttgtatttcatttcaggCTTGAGAATTGGCCTTTTGAACTGTATAggatattgtattttctgttttcgtTTACATGACAGATGGCACTCGGTTTCGAAAATGCTGTTGCTTGCAGGTTGCAGTAGGTAATTTTTTACTCTGTCTAAAACTACTTTCCTATATGTATATCTCTCCCTTAGAGAGAAATTAAACTaggaaataaaacctttttgtgCAATTTTTCCATCATTAAATGTCATTCATAGGGAGTTCTAGATTACAAACTACAGGTAGCTAATCAAAAAGTATGACCAAAGCACCTACGTTTGACcttttttagtttgtaaatCCCAGCTTCCAGTAGGTCAGCTTCTTACTTGATATTTAAACACATCTCTGAGTATGGGACTAGCATTAGATATGTGATGTTTCTGTGAATGAAAGGGAGTTTCTTGTGTCAATTATAAACCAAAACCAAGCCCGTTCACCTTTTTTCTACTCTTTTtcattgtcttctgttttccaggCCTAAGATCCTTGGCCCGTAAAGAGCTTTATCATAGGCCAGTGAAGATACTTAATCTCTGAagtgtgcatttaatttttgtttggCCCTAAGTTATGACTTATCGTTGCgttttaaatcacaatttaacTGTGTCCATCATTCCGCATTTTACAGTATAGCTGCCTGTTAAGACCTAGTCTCCAAAACGAAGGCAGATCCGATTACCTGCCCCTAGTGTAAGCGGGCTCCTTCAGCATAGTACTCAGAAGTAAAAAAACGATTAGCAATGAAGATTCACAATCTCGATGccatcttttcattttgttttcagcgGACATGCGTTCCCTTAGATAATCTGTTGATTGAATTCCTCTTCTCTCGAATTTTGGGGTTGCAGCACAGAGGGGGAGTGCTGTGCTCTTcacttgaatacatttttcacttgaGAAACCGCTGTTTTTCAGGACACCTTAATTCTTTCTGATTTATTCTGCTGCTTTTCATTGAAGCTGCTTTTCACAGCAGCGCCactcattgtattttgtaacagGTGCCAATAAAAAAGTGGTTACATCA

Function

symbol description
znf598 Predicted to enable ribosome binding activity and ubiquitin protein ligase activity. Predicted to be involved in protein monoubiquitination and rescue of stalled ribosome. Predicted to act upstream of or within regulation of translation. Orthologous to human ZNF598 (zinc finger protein 598, E3 ubiquitin ligase).

NR:

description
Znf598 protein, partial

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K22381 ZNF598; E3 ubiquitin-protein ligase ZNF598

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018503 True 6076 mRNA 0.50 18 12885187 12904501

Neighbor

gene id symbol gene type direction distance location
AMCG00018502 cacna1h,LOC108430011 coding upstream 6306 12836224 ~ 12878881 (+)
AMCG00018501 LOC107376712,LOC106516530,LOC103393184,LOC108242978 coding upstream 66044 12784691 ~ 12819143 (+)
AMCG00018500 NA coding upstream 147119 12714107 ~ 12738068 (+)
AMCG00018497 epn2,LOC107738009,LOC104959799 coding upstream 236307 12619360 ~ 12648880 (+)
AMCG00018492 NA coding upstream 345920 12530558 ~ 12539267 (+)
AMCG00018507 drg2 coding downstream 30095 12934596 ~ 12943295 (+)
AMCG00018508 NA coding downstream 54211 12958712 ~ 13031788 (+)
AMCG00018506 NA coding downstream 128505 13033006 ~ 13043686 (+)
AMCG00018511 NA coding downstream 182960 13087461 ~ 13088726 (+)
AMCG00018510 llgl1,LOC107674688,LOC107592402 coding downstream 196102 13100603 ~ 13123386 (+)
G116728 NA non-coding upstream 1273 12879586 ~ 12883914 (+)
G116725 NA non-coding upstream 184422 12700501 ~ 12700765 (+)
G116667 NA non-coding upstream 565699 12287569 ~ 12319488 (+)
G116654 NA non-coding upstream 606347 12278430 ~ 12278840 (+)
G116653 NA non-coding upstream 611691 12272589 ~ 12273496 (+)
G116765 NA non-coding downstream 599 12905100 ~ 12958552 (+)
G116769 NA non-coding downstream 28439 12932940 ~ 12934564 (+)
G116775 NA non-coding downstream 142616 13047117 ~ 13048094 (+)
G116790 NA non-coding downstream 225237 13129738 ~ 13215352 (+)
G116882 NA non-coding downstream 462139 13366640 ~ 13367028 (+)
AMCG00018498 NA other upstream 273308 12543545 ~ 12611879 (+)
AMCG00018491 slc5a10 other upstream 364856 12503023 ~ 12520331 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other upstream 385133 12489467 ~ 12500054 (+)
G116585 rbbp6,LOC107689611 other upstream 914409 11966247 ~ 11970778 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other upstream 1629022 11252359 ~ 11256165 (+)
G116832 NA other downstream 348842 13253343 ~ 13255794 (+)
AMCG00018520 slc29a4,LOC107703421,LOC107737679,LOC107581724 other downstream 403397 13307898 ~ 13346877 (+)
AMCG00018537 radil,LOC107725399,LOC107722964,LOC107590699,LOC107564693 other downstream 1093408 13997909 ~ 14022806 (+)
G117033 NA other downstream 1141758 14046259 ~ 14049153 (+)
AMCG00018538 LOC103397138,LOC107554284,LOC100698873 other downstream 1236876 14141377 ~ 14145995 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026660 znf598 coding NC_007114.7 CM002887.2 40185253 ~ 40202607 (-)
grasscarp (Ctenopharyngodon idella) CI01000046_03998572_04009276 ZNF598 coding CI01000046 null 3998572 ~ 4010216 (+)