AMCG00018509


Basic Information

Item Value
gene id AMCG00018509
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 13162657 ~ 13166145 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018509
ATGGAGCAACGTGGAAAGCGCAAAGGGGAAACCAATATCGCAGCAGTGGTGGACTTCCTGCTGGCCAATGCCCGGCTGGTGCTGGGGGTAGGGGGAGCAGCAGTGCTGGGAATAGCCACACTGGCAGTGAAGCGTCTGATTGACCGAGCTGGCCGTCCCCCTGATGATGAGAAGCCAGACAAGAGCATTCCAGAGGGCTGGGAGGAGCTGGGCCTGGTCAGCGCCTCGCCACAGCTCCTGAGGAAGGGCTTGGAGGGTGTGGTGATCAAACAGCTCACGGCTGCCAGCAAAGCACAGAAAGAAGGCCCAAAGCCCTCAACTGTGTCAGAGAAGCTGAAACCTGAAATCAAACGTGTTCAGCTCTGCGTCACTCTTCAAGAGAAACTGGTGCAGTATTACCAGAATCACGTGGCTCTGTCTGAAGACGATGTCAGTCGCGTCAAACAGCAGGCCCTGGAGATCTGCATAGAGCTCCAGGGATTCCTCCGTGCCAAGCAGCCAGACATGCCCCTGGGAGAGATGCACCTGGGTGGCTCCCTGCTGGACGGTCTACAGGTGGTGGCAGCCAACCACGCTTGTCTCCTGGTGCCCCTGCAGATCGAGGACAAGTTCTGGACCCTCATTCCAGGAGAGGAGACCATCCTGAGCAACCCCCAGTTTTGGATGGTGCGGCGGACAAACCTGGAATACTTCCCTCGCGGTAGGAGCTTCTGGGACAAATTCATTATTGGGGGCTACCTCTCTTCTAAGGTGCTTGTTAACACTTTGAACAAAACCGTGATGGAATCCATGAACTGGCCTGCTCTGGATGGCATGCTGGAGTGCACAGTCAGGCCAGTGATGGGCTCCCAGGAACTCAAACTTGAAGTTCACAGTGAGCACGGCCAGCTGTTTATTAACATCTTGCCGACCATCATTGTCAACGACGTCATTCTCACAGCGCAGCTAGAGGTCACTGGAAACTTTGACAATTTGTGGTACCAAAGCTTTTACACCTCCGAGACCAATAAGCTTGCAGATTTGGATGATGCTGACTGTGGGGTCAGAAAACGTTGCTTGAAAACCCTCAAGGCGGTGTGCAGAGACTGCCCGGCCCTCAGGAAGCTGACCGGCAGGCACCTGGCTAACGTCATTCTACACCTGAGCGAGAAGGAATCGGATTGGACGGAAGCTGCTTTCGCCGACCGATTTCAGCAAGTGATCTCGGAGCTCATTGGCTACCTGGAGCAAGGCTGCCTGCCCGGCTACTTCAACAAGGTGGTGAACTTGCTGTCGGACTGCTCAGAAGAGGAAATTGATGACATTGGGTTTACGCTGTACTGCGCTGTGTCTGAGCCAGAGATACTGCTTCAAACATGA

Function

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018509 True 1359 mRNA 0.55 3 13162657 13166145

Neighbor

gene id symbol gene type direction distance location
AMCG00018510 llgl1,LOC107674688,LOC107592402 coding upstream 39271 13100603 ~ 13123386 (+)
AMCG00018511 NA coding upstream 73931 13087461 ~ 13088726 (+)
AMCG00018506 NA coding upstream 118971 13033006 ~ 13043686 (+)
AMCG00018508 NA coding upstream 130869 12958712 ~ 13031788 (+)
AMCG00018507 drg2 coding upstream 219362 12934596 ~ 12943295 (+)
AMCG00018514 NA coding downstream 21778 13187923 ~ 13196197 (+)
AMCG00018516 bud31,LOC106595689 coding downstream 69056 13235201 ~ 13237686 (+)
AMCG00018515 cpsf4,LOC107578701,LOC107720053 coding downstream 80389 13246534 ~ 13252245 (+)
AMCG00018523 tnrc18,LOC107742388 coding downstream 302748 13468893 ~ 13534827 (+)
AMCG00018526 fscn1a,fscn1,LOC107742378,LOC107581720,LOC107674660 coding downstream 473578 13639723 ~ 13649092 (+)
G116775 NA non-coding upstream 114563 13047117 ~ 13048094 (+)
G116765 NA non-coding upstream 204105 12905100 ~ 12958552 (+)
G116769 NA non-coding upstream 228093 12932940 ~ 12934564 (+)
G116728 NA non-coding upstream 278743 12879586 ~ 12883914 (+)
G116725 NA non-coding upstream 461892 12700501 ~ 12700765 (+)
G116882 NA non-coding downstream 200495 13366640 ~ 13367028 (+)
G116941 NA non-coding downstream 499878 13666023 ~ 13691367 (+)
G116975 NA non-coding downstream 673571 13839716 ~ 13839971 (+)
G116976 NA non-coding downstream 680745 13846890 ~ 13847092 (+)
G117130 NA non-coding downstream 1076719 14242864 ~ 14244203 (+)
AMCG00018498 NA other upstream 550778 12543545 ~ 12611879 (+)
AMCG00018491 slc5a10 other upstream 642326 12503023 ~ 12520331 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other upstream 662603 12489467 ~ 12500054 (+)
G116585 rbbp6,LOC107689611 other upstream 1191879 11966247 ~ 11970778 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other upstream 1906492 11252359 ~ 11256165 (+)
G116832 NA other downstream 87198 13253343 ~ 13255794 (+)
AMCG00018520 slc29a4,LOC107703421,LOC107737679,LOC107581724 other downstream 141753 13307898 ~ 13346877 (+)
AMCG00018537 radil,LOC107725399,LOC107722964,LOC107590699,LOC107564693 other downstream 831764 13997909 ~ 14022806 (+)
G117033 NA other downstream 880114 14046259 ~ 14049153 (+)
AMCG00018538 LOC103397138,LOC107554284,LOC100698873 other downstream 975232 14141377 ~ 14145995 (+)

Expression


Co-expression Network