AMCG00018510 (llgl1,LOC107674688,LOC107592402)


Basic Information

Item Value
gene id AMCG00018510
gene name llgl1,LOC107674688,LOC107592402
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 13100603 ~ 13123386 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018510
TTTATTATTCTACTCAATTTCTCTTTTTATGAGTTCAGTGTTCCAGAGGACTATAAAAGTGGGAAATCTCTCGGCCCAGTCGAGTCTCTACAGGAACACCCCCAGAACCCCAGCAAAATCCTCATTGGGTACAGCCGTGGCCTAGTGGTACTGTGGGACCAGACCACAAGACAGGTGGACAACCTCTTCTTGGGGAACCAGCTCGAGAGCCTGGGCTGGGAGAGCAGTGGGAAGACGTTCGTGAGCTCCCACAGCGATGGAGGGTACATGGTCTGGGCGGTGAACAGCAGCAGCCCCCGCACACAGCAGCCCGTCAGCTCAATCATACCTTATGgtcCCTTTCCCTGCAAAGCCATTAACAAGATCCTATGGAGGACAAGTGAATCAGGGGCCCCCATTGTGCTTTTCAGTGGTGGCATGCCCAGGGCCAGCTATGGAGACCGGCACTGCGTGACTGTGCTGCAGGAAAAGACACAGGTCACTCTTGACTTCACCTCTCGAGTCATTGACTTCTTCACCATCCACAGCACCGATGGCGCCAAGGATTATGACAACCCGGCTGCCCTGGTGGTCCTGCTGGAAGAGGAACTGGTGGTGATTGATCTCCAGACCCCAGGCTGGCCCACCATTCCCTCCCCCTACCTGGCTCCTCTGCACTCCTCTGCCATCACCTGCTCCTACCACATCTCTAACGTGCCCACCAAGCTGTGGGAGAGGGTGCTGGCTGCGGGGCAGCAGCAGAGCCCGCCACAGACACATGTGAAGTGGCCAATCAATGGGGGGAAGAATTTAGCTCCTGATCCAAAACACAAAGGCCTGCTGTTGACTGGCCATGAAGACGGCACGGTGCGGTTCTGGGATGCCTCTGGGGTCTCTCTAAAGCCCCTGTACAAGCTGAGCACCGCCAACATCTTCCAGACAGACTGCGACCACAATGACAGCCTGACACAGCCGGGAGAGGAGGAGTGGCCCCCCTTCAGAAAGGTTGGGTGCTTCGACCCATACAGTGACGACCCGCGGCTGGGTATCCAGAAGATCTCTCTATGTAAATACAGCGGGAAGCTGGTGGTGGCTGGGACAGCGGGGCAGGTCCTGGTGATGGAGGTCAACGAGGAGATGTCTGATCACTTGATTAACACGGCCACTGTGGACCTACTCCAGGACCGCGAAGGCTTCAGCTGGAAAGGTCACGACCGGCTCGCCCCAAAGAACGGACCAATCAGCTTCCCGCCGGGCTTCCATCCCATCATCCTGGTGCAGTGCCTGCCCCCAGCTGCCGTCACCGCCGTGACACTGCACGCAGAGTGGAACCTCATTGCCTTTGGGACCAGCCATGCCATGGAGGGCCCACTGTCTCGGGTGAAGTCCCTGAAGAAATCCCTGCGTCAGTCCTTCAGGAGAATCCGTAAGAGCCGAGTGTCAGGGAAAAAGCGAGTGGTCATCAACAGCCCGACCAGCAAGGTCCAGGAGGCCAATGCCCAGCTGGCGGAGCAGGCGGGGCCGGCGGACGTGGAGGTGGCGCCGGTGCAGCGGAGGATAGAGCCGCGCTCTGCCGATGACTCGCTGTCCGGGGTGGTGCGCTGCCTGTGCTTCGCTGACACGTACCTGAGAGACGGGACGCACCATGGCCCAACGATGTGGGCGGGTACCAACTCGGGCTCGGTGTACGCCTATGCCCTGGAGGTGCCCTCTCTGGAGAAGTTCTCGGAGCAGAGCGTTGAGGCTGTACTGGGCAAGGAGATCCAGCTGATGCACCGGGCACCTGTGGTGTCCATTGCGGTGCTGGACGGCCGGGGGAACCCGCTGCCCGAGCCCTACGAGGTGTCGCAAGACCTGGCCAAGGCCCCCGACATGCAGGGCAGCCATTCTGTCCTCATCGCCTCAGAGGAGCAGTTCAAGGTTTTCACACTGCCCAAAGTTAGTGCCAAGACCAAGTTCAAGCTGACGGCCCACGAGGGCTGCCGGGTGCGGAAGGTGGCGCTGGCGAACTTCGGCAGTGTGTCGTCCGACGATTACTCTGAGAATGGCCTGATGTGTCTTACCAACCTGGGCGACATCCATGTGTTCAGCATCCCGGGACTGCGACCACAAGTCCGCTATGACTGCATCCGCAAGGAAGACATCAGTGGAATCGCCTCCTGCGTCTTCACCAAGACTGGCCAGGGTTTTTACTTGATTTCTCCCTCCGAGTTTGAGCGTTTCTCCCTGTCTGCACGAGTCATCACAGAGCCGGTGTGTACTGTGGATTTGGACAGACCTCATGACTCCACGGCTCACAGCAACAACACACCCGGGTCACTTCAGGCAAATGGAACTCACAAAGTACCGAGTGCCAATGATAGTCACTCCCTGGGGGAGGCAGAAGGAGTTCTGGAAGAGATCCAGGCGGCTctgtcttctcctcctctcGACTCCCCCAACAGCAGTGCTGACATCACACTCGACACCACGGGGGACATCACAGTGGAGGACGTCAAAGACTTCTTA

Function

symbol description
llgl1 Predicted to enable GTPase activator activity and myosin II binding activity. Acts upstream of or within cell projection assembly; regulation of Notch signaling pathway; and sensory system development. Located in basolateral plasma membrane. Is expressed in central nervous system; eye; head; and retina. Orthologous to human LLGL1 (LLGL scribble cell polarity complex component 1).

NR:

description
lethal(2) giant larvae protein homolog 1 isoform X2

GO:

id name namespace
GO:0003407 neural retina development biological_process
GO:0008593 regulation of Notch signaling pathway biological_process
GO:0048919 posterior lateral line neuromast development biological_process
GO:0016323 basolateral plasma membrane cellular_component

KEGG:

id description
K06094 LLGL; lethal(2) giant larvae protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018510 True 2487 mRNA 0.58 16 13100603 13123386

Neighbor

gene id symbol gene type direction distance location
AMCG00018511 NA coding upstream 11877 13087461 ~ 13088726 (+)
AMCG00018506 NA coding upstream 56917 13033006 ~ 13043686 (+)
AMCG00018508 NA coding upstream 68815 12958712 ~ 13031788 (+)
AMCG00018507 drg2 coding upstream 157308 12934596 ~ 12943295 (+)
AMCG00018503 znf598 coding upstream 196102 12885187 ~ 12904501 (+)
AMCG00018509 NA coding downstream 39271 13162657 ~ 13166145 (+)
AMCG00018514 NA coding downstream 64537 13187923 ~ 13196197 (+)
AMCG00018516 bud31,LOC106595689 coding downstream 111815 13235201 ~ 13237686 (+)
AMCG00018515 cpsf4,LOC107578701,LOC107720053 coding downstream 123148 13246534 ~ 13252245 (+)
AMCG00018523 tnrc18,LOC107742388 coding downstream 345507 13468893 ~ 13534827 (+)
G116775 NA non-coding upstream 52509 13047117 ~ 13048094 (+)
G116765 NA non-coding upstream 142051 12905100 ~ 12958552 (+)
G116769 NA non-coding upstream 166039 12932940 ~ 12934564 (+)
G116728 NA non-coding upstream 216689 12879586 ~ 12883914 (+)
G116725 NA non-coding upstream 399838 12700501 ~ 12700765 (+)
G116790 NA non-coding downstream 6352 13129738 ~ 13215352 (+)
G116882 NA non-coding downstream 243254 13366640 ~ 13367028 (+)
G116941 NA non-coding downstream 542637 13666023 ~ 13691367 (+)
G116975 NA non-coding downstream 716330 13839716 ~ 13839971 (+)
G116976 NA non-coding downstream 723504 13846890 ~ 13847092 (+)
AMCG00018498 NA other upstream 488724 12543545 ~ 12611879 (+)
AMCG00018491 slc5a10 other upstream 580272 12503023 ~ 12520331 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other upstream 600549 12489467 ~ 12500054 (+)
G116585 rbbp6,LOC107689611 other upstream 1129825 11966247 ~ 11970778 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other upstream 1844438 11252359 ~ 11256165 (+)
G116832 NA other downstream 129957 13253343 ~ 13255794 (+)
AMCG00018520 slc29a4,LOC107703421,LOC107737679,LOC107581724 other downstream 184512 13307898 ~ 13346877 (+)
AMCG00018537 radil,LOC107725399,LOC107722964,LOC107590699,LOC107564693 other downstream 874523 13997909 ~ 14022806 (+)
G117033 NA other downstream 922873 14046259 ~ 14049153 (+)
AMCG00018538 LOC103397138,LOC107554284,LOC100698873 other downstream 1017991 14141377 ~ 14145995 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000046_04098044_04120141 LLGL1 coding CI01000046 null 4096231 ~ 4120352 (+)