AMCG00018516 (bud31,LOC106595689)


Basic Information

Item Value
gene id AMCG00018516
gene name bud31,LOC106595689
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 13235201 ~ 13237686 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018516
ATGCCTAAAGTGAAGAGGAGTAGGAAACCACCGCCAGACGGATGGGAGCTGATTGAGCCCACGCTGGATGAGCTGGACCAGAAAATGAGGGAAGCTGAGACGGAGCCCCATGAAGGCAAGAGGAAGGTGGAATCACTGTGGCCAATATTCAGACTGCATCACCAGCGCAGCCGCTACATCTTTGACCTCTTCTACAAAAGAAAGGCCATAAGTAGAGAGCTCTATGATTATTGCATCAAAGAAGGATATGCTGACAAGAATCTGATCGCAAAATGGAAGAAGCAAGGCTATGAAAACCTGTGCTGCCTGCGTTGCATCCAGACCCGGGATACCAACTTTGGAACCAACTGCATTTGCCGAGTTCCCAAGAGCAAGCTCGAAGTGGGAAGAATAATCGAATGCACTCACTGTGGGTGCAGAGGATGCTCTGGGTGAAAACTGTGCTTTCTGCACTTAAGGGACATTAGGGCTCATATATCCTAGACCTGTGTGCTTTTGAAAATCCTGGACCATACTTGGATGAATACTATTCCAGATTGAAAATCTGTAGTGTACACTGTGATGATTGTTAATGTAATGCTGTACCTCCTATACGTGTTAAGACAGGTGCTGTAAGACCGAACGACTTCATTGCTGTAcactgtctgtgttttattatttttttttataattgctt

Function

symbol description
bud31 Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of spliceosomal complex. Orthologous to human BUD31 (BUD31 homolog).

NR:

description
protein BUD31 homolog

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K12873 BUD31, G10; bud site selection protein 31

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018516 True 676 mRNA 0.45 4 13235201 13237686

Neighbor

gene id symbol gene type direction distance location
AMCG00018514 NA coding upstream 39004 13187923 ~ 13196197 (+)
AMCG00018509 NA coding upstream 69056 13162657 ~ 13166145 (+)
AMCG00018510 llgl1,LOC107674688,LOC107592402 coding upstream 111815 13100603 ~ 13123386 (+)
AMCG00018511 NA coding upstream 146475 13087461 ~ 13088726 (+)
AMCG00018506 NA coding upstream 191515 13033006 ~ 13043686 (+)
AMCG00018515 cpsf4,LOC107578701,LOC107720053 coding downstream 8848 13246534 ~ 13252245 (+)
AMCG00018523 tnrc18,LOC107742388 coding downstream 231207 13468893 ~ 13534827 (+)
AMCG00018526 fscn1a,fscn1,LOC107742378,LOC107581720,LOC107674660 coding downstream 402037 13639723 ~ 13649092 (+)
AMCG00018527 NA coding downstream 545028 13782714 ~ 13785549 (+)
AMCG00018530 LOC108430595 coding downstream 622209 13859895 ~ 13878065 (+)
G116790 NA non-coding upstream 19849 13129738 ~ 13215352 (+)
G116775 NA non-coding upstream 187107 13047117 ~ 13048094 (+)
G116765 NA non-coding upstream 276649 12905100 ~ 12958552 (+)
G116769 NA non-coding upstream 300637 12932940 ~ 12934564 (+)
G116728 NA non-coding upstream 351287 12879586 ~ 12883914 (+)
G116882 NA non-coding downstream 128954 13366640 ~ 13367028 (+)
G116941 NA non-coding downstream 428337 13666023 ~ 13691367 (+)
G116975 NA non-coding downstream 602030 13839716 ~ 13839971 (+)
G116976 NA non-coding downstream 609204 13846890 ~ 13847092 (+)
G117130 NA non-coding downstream 1005178 14242864 ~ 14244203 (+)
AMCG00018498 NA other upstream 623322 12543545 ~ 12611879 (+)
AMCG00018491 slc5a10 other upstream 714870 12503023 ~ 12520331 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other upstream 735147 12489467 ~ 12500054 (+)
G116585 rbbp6,LOC107689611 other upstream 1264423 11966247 ~ 11970778 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other upstream 1979036 11252359 ~ 11256165 (+)
G116832 NA other downstream 15657 13253343 ~ 13255794 (+)
AMCG00018520 slc29a4,LOC107703421,LOC107737679,LOC107581724 other downstream 70212 13307898 ~ 13346877 (+)
AMCG00018537 radil,LOC107725399,LOC107722964,LOC107590699,LOC107564693 other downstream 760223 13997909 ~ 14022806 (+)
G117033 NA other downstream 808573 14046259 ~ 14049153 (+)
AMCG00018538 LOC103397138,LOC107554284,LOC100698873 other downstream 903691 14141377 ~ 14145995 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G201533 bud31,LOC107737741,LOC107720055 non-coding NC_035919.1 CM008322.1 32974457 ~ 32977913 (-)
mexican tetra (Astyanax mexicanus) G152205 NA non-coding NC_035913.1 CM008316.1 15303516 ~ 15303834 (-)