AMCG00018520 (slc29a4,LOC107703421,LOC107737679,LOC107581724)


Basic Information

Item Value
gene id AMCG00018520
gene name slc29a4,LOC107703421,LOC107737679,LOC107581724
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 13307898 ~ 13346877 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018520
ATGGGCTCTGTTGGAGTGGAGAGACGTAAGCAGGCCACTCCGGCCCTCACCCCCGAGGGGAATGTAGTCATGAGCTTCAGCTTTGAGAGCTACCAGCTGGAGGAAGAGGACAGCCAGGCCAAGGACGTCCCAGACAAAGGTGTGCTAACCTTCACCGAGCCAGCATTTGAAGAACCAGAGCCAGATGACCGTTACCATGGGATCTACTTTGCCATGCTGCTTGCTGGAGTTGGGTTCTTGCTGCCTTACAATAGCTTTATAACTGACGTAGACTACTTACATCATAAATTTGAAGGGACATCGATCGTCTTTGATATGAGCCTTACATATATTTTGGTGGCTCTTGTGGCTGTAATACTGAACAATGCTTTGGTGGAGATGCTCAGTCTTCACACACGAATCACTGTGGGCACGGCCGGTGTGATCATTTCCCTGAGTCGGATCTTAACCAAATTCCTGGTCCAGGAGGAAAAGAAGAACACCatcatcttcttcttcatctccATCAGCATGGAGCTGATGTGCTTCATACTCCACCTGCTGGTGCGGAGGACGCGCTTCGTGAAGCACTACACCGGCCGCGCCAGGCAGGGGCTGGCCGAGGTCAAAGGACACACCGACCCTGGCACAGGGTACCGTGTGCACCATGACGTCATTACAGAGGAAGATAATGCTCCGATGAGCATTTCTCCCACAGAAGTTGGAACGGAAGCAGAATTTGCGGGAGGTGGGACGTACGTGAGGTTCGACGTccccaaaccaaaaataaaaaggaactgGCCAAGTATAAGGGACATGATCCTACATCGCTACGTCGTTTCCCGGGTGATCTGGACCTACATGCTGTCTATCGCTGTGACCTACTTCATCACCCTGTGCCTGTTCCCAGGCCTGGAGTCTGAGATCCGCAACAACACCCTGGGAGAGTGGCTTCCCATCCTCATCATGGCCATCTTTAACATGTCTGACTTTGTGGGCAAGATCCTGGCAGCTCTGCCCTATGACTGGAATGGCAGCCGGCTGCTCCTGTTTTCCTGTATTCGGGTGGTCTTCATCCCCCTCTTCATCATGTGTGTCTACCCAACTGGAAAGCCTGCCCTCAGCCACCCCGCCTGGCCCTGCATTTTCTCCCTCCTCATGGGCATTAGCAATGGCTATTTCGGCAGTGTGCCCATGATCCAGGCGGCAGGGAAGGTCATTCCTGAGCAGAAAGAGCTGGCAGGCAACACAATGACAGTGTCCTATATGACTGGACTGATGCTGGGCTCTGCAGTGGCTTACTTTGCCTACAGCCTTACCTCTCACAGCTCATGTTATCACACGGACACCGACAACAGCTCCATTACGCCCGGGTACTGA
>TU146394
AATAACCAATTTTTCAACAAGTGGTTTAACAACACTGAGATCTTTTCTCAGCGTTCTCCttcaaaaatgaatattttcatTGAATCTATATAGTAACACGAAATGACCTAGTCACTGACAGTGCACATTTATCTACTTTTATCTGTATTATATTGAATGGACCATATCATTTGGAAGATTGTCATTTGACATGCTATGTAGAGAGATGTTATTTGCCAAAGCTTTTGAAAGGGTTTAGTTGATATCAGTATCCTTAGAGACGCATATTGATAGAAAACGTGAATTTTCCCAGTCAAACCGCTGGTATATGCTTAGATCCCGCGAATGCTTGGGATTCAACCAAAGCCcctttaaattgaaatgctaGCAGTTTGAGTCGGGGCTAGTGGAGACGGCTGTGTGgagcaggaggcaggaggcTGTGCAGGCGGCGCACTTTGCTTTTGCACCTTGCCTGCAAAGGGGACGTAGCAGCCGCAGACCTCTCTGATGGATGGGACTCACCCTCTGAAGGAGAGATGGCAAACGCGATAATTTCTCCGATTTTCTTTTAACGGGATGAAATCTTAACCAATCCAACGGATTCGCTACATCTACAAAAGGTGTCCTGAAGAACCCTCACCTCCTGTTGTTTGTGGACTGAGAGAAGCAAGGCCtagagtaagagagagaaagagggaaccGGCGCCAGGATGGGCTCTGTTGGAGTGGAGAGACGTAAGCAGGCCACTCCGGCCCTCACCCCCGAGGGGAATGTAGTCATGAGCTTCAGCTTTGAGAGCTACCAGCTGGAGGAAGAGGACAGCCAGGCCAAGGACGTCCCAGACAAAGGTGTGCTAACCTTCACCGAGCCAGCATTTGAAGAACCAGAGCCAGATGACCGTTACCATGGGATCTACTTTGCCATGCTGCTTGCTGGAGTTGGGTTCTTGCTGCCTTACAATAGCTTTATAACTGACGTAGACTACTTACATCATAAATTTGAAGGGACATCGATCGTCTTTGATATGAGCCTTACATATATTTTGGTGGCTCTTGTGGCTGTAATACTGAACAATGCTTTGGTGGAGATGCTCAGTCTTCACACACGAATCACTGTGGGT

Function

symbol description
slc29a4 Enables several functions, including efflux transmembrane transporter activity; monoamine transmembrane transporter activity; and neurotransmitter transmembrane transporter activity. Involved in several processes, including cation transport; export across plasma membrane; and monoamine transport. Part of apical plasma membrane and basolateral plasma membrane.

NR:

description
PREDICTED: equilibrative nucleoside transporter 4

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005337 nucleoside transmembrane transporter activity molecular_function

KEGG:

id description
K03323 SLC29A4, ENT4; solute carrier family 29 (equilibrative nucleoside transporter), member 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018520 True 1359 mRNA 0.53 8 13321350 13346877
TU146394 False 1103 TUCP 0.46 4 13307898 13328272

Neighbor

gene id symbol gene type direction distance location
AMCG00018515 cpsf4,LOC107578701,LOC107720053 coding upstream 55653 13246534 ~ 13252245 (+)
AMCG00018516 bud31,LOC106595689 coding upstream 70212 13235201 ~ 13237686 (+)
AMCG00018514 NA coding upstream 111701 13187923 ~ 13196197 (+)
AMCG00018509 NA coding upstream 141753 13162657 ~ 13166145 (+)
AMCG00018510 llgl1,LOC107674688,LOC107592402 coding upstream 184512 13100603 ~ 13123386 (+)
AMCG00018523 tnrc18,LOC107742388 coding downstream 122016 13468893 ~ 13534827 (+)
AMCG00018526 fscn1a,fscn1,LOC107742378,LOC107581720,LOC107674660 coding downstream 292846 13639723 ~ 13649092 (+)
AMCG00018527 NA coding downstream 435837 13782714 ~ 13785549 (+)
AMCG00018530 LOC108430595 coding downstream 513018 13859895 ~ 13878065 (+)
AMCG00018534 arpc1a,LOC107720063,LOC107674705,LOC107591778 coding downstream 538903 13885780 ~ 13902661 (+)
G116790 NA non-coding upstream 92546 13129738 ~ 13215352 (+)
G116775 NA non-coding upstream 259804 13047117 ~ 13048094 (+)
G116765 NA non-coding upstream 349346 12905100 ~ 12958552 (+)
G116769 NA non-coding upstream 373334 12932940 ~ 12934564 (+)
G116728 NA non-coding upstream 423984 12879586 ~ 12883914 (+)
G116882 NA non-coding downstream 19763 13366640 ~ 13367028 (+)
G116941 NA non-coding downstream 319146 13666023 ~ 13691367 (+)
G116975 NA non-coding downstream 492839 13839716 ~ 13839971 (+)
G116976 NA non-coding downstream 500013 13846890 ~ 13847092 (+)
G117130 NA non-coding downstream 895987 14242864 ~ 14244203 (+)
G116832 NA other upstream 52104 13253343 ~ 13255794 (+)
AMCG00018498 NA other upstream 696019 12543545 ~ 12611879 (+)
AMCG00018491 slc5a10 other upstream 787567 12503023 ~ 12520331 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other upstream 807844 12489467 ~ 12500054 (+)
G116585 rbbp6,LOC107689611 other upstream 1337120 11966247 ~ 11970778 (+)
AMCG00018537 radil,LOC107725399,LOC107722964,LOC107590699,LOC107564693 other downstream 651032 13997909 ~ 14022806 (+)
G117033 NA other downstream 699382 14046259 ~ 14049153 (+)
AMCG00018538 LOC103397138,LOC107554284,LOC100698873 other downstream 794500 14141377 ~ 14145995 (+)
AMCG00018553 cryba4,LOC106568369,LOC106563090 other downstream 842126 14189003 ~ 14191077 (+)
AMCG00018551 NA other downstream 892365 14239242 ~ 14242717 (+)

Expression


Co-expression Network