AMCG00018534 (arpc1a,LOC107720063,LOC107674705,LOC107591778)


Basic Information

Item Value
gene id AMCG00018534
gene name arpc1a,LOC107720063,LOC107674705,LOC107591778
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 13885780 ~ 13902661 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018534
ATGTCTCTCCATCAGTTTCTTCTGGAACCCATCACCTGCCATGCGTGGAACAGGGACAGAACCCAGATCGCTATAAGTCCCAATAACCATGAAGTCCATATCTACAAAAAGAGTGGCAACCAGTGGGTGAAAACCCATGAATTGAAGGAGCATAATGGACACATCACAGGCATTGATTGGGCCCCCAAAAGTGATCGTATTGTGACTTGTGGTTCAGACCGTAATGCCTATGTTTGGAGCCAGAAAGATGGCATTTGGAAACCAACTTTGGTCATTCTGAGGATTAACCGTGCCGCCACGTTTGTCAAATGGTCTCCCCTGGAGAATAAGTTTGCAGTGGGTAGTGGAGCTCGTCTGATCTCAGTTTGCTACTTTGAGTCTGAAAATGATTGgtGGGTTAGTAAACACATCAAGAAACCCATTCGTTCCACAGTCTTGAGTTTAGACTGGCATCCAAACAATGTGCTCCTGGCCGCTGGGTCTTGTGACTTCAAATGCAGAGTGTTTTCTGCCTACATCAAGGAAGTGGATGAAAAACCAGCACCCACTCCCTGGGGCTCCAAGATGCCCTTTGGTCAGGTGATGGCCGAGTTTGGGGGCGCTGGCAGTGGAGGATGGGTTCACAGCGTTTGTTTCTCTGTCAGTGGGAATCGTTTAGCCTGGGTTAGCCATGACAGCACGGTGTCTATGGTAGATGCTTCCAAAAGCATGATGCTTGCTCAGCTGAAGACGGAATTCCTTCCTCTGCTGAGCGTTGTCTTTGTCTCGGAGAGCAGTGTTGTGGCAGCGgGTCATGATTGCTGCCCGATGCTGTTTAACTGCGATGATCATGGGAGCCTGAGCTTCATGTCTAAGTTGGACATCCCCAAGCAGAGCATCCAGCGCAACATCTCCGCCATGGAGCGCTTCCGCAACATGGACAAGAGGGCCACAACTGAGGACCGCAACACCTCGCTGGAGACACTGCACCAAAACAGTATCACCCAAGTGTCTATCTATGAAGGAGACAAAAGAGATTGTCGTAAATTCTGCACTACAGGAATTGATGGAGCAATGACCATATGGGATTTTAAGAAGGATGGGGCCAAGTGGAACAAGATCCATGTGCTGAAGGAACACAATGGACAAGTGACTGGCATCGACTGGGCTCCTGAGAGCAATCGCATTGTGACCTGCGGCACCGACCGCAACGCCTATGTATGGACCCTTAAGGGCGAGGTATGGAAGCCCACCTTGGTCATCCTAAGGATCAACCGGGCTGCCCGCTGTGTCAAGTGGTCCCCCAAGGAAAACAAGTTTGCTGTGGGCAGCGGCTCCCGACTTATTTCTGTCTGCTACTTTGAGCAGGAGAATGACTGGTGGGTTTGCAAACACATCAAGAAGCCGATTCGCTCCACTGTCCTGAGCTTGGATTGGCATCACAACAATGTTCTGCTGGCAGCTGGCTCTTGTGACTTCAAGTGCAGGGTTTTTTCGGCCTACATCAAAGAAGTTGAGGAGAAGCCATCTCCAACTCCCTGGGGCTCCAAGATGCCATTTGGGGAATTGATGTTCGAGTCAAGCGGCAGCTCCGGTTGGGTTCACAGTGTGTGCTTCTCCAGCAGCGGGAGTCGTGTGGCCTGGACCAGCCATGACAGCACTGTGGCTGTGGCAGACGCTGGTAAAAACACTGTTATTTCCAGCCTGAGCTCTGAAACGCTTCCTCTTCTGACTGTTATGTTCATCACCGAGAACAGCTTGGTGGCAGCTGGAAAGGGGACCATTACCTTTGGTGGGAAGCTGGACGTGCCCAAGCAGAGTGCCCAGCGTGGGATGACCGCCAGAGAGCGTTTCCAAAACCTGGACAAGAAGGCCACCACTGAGACGAAGGAGGCCATCCTGGAGACCCTGCACAAAAACAGCATCAGGCAAGCACTCTCACCTTCCTATTCAAATCTCTATTCTGGAAGGGGGCAAGTCCAAATGTGCCAAATTCTGTACCACTGGCATGGATGGAGGACTGGCAATTTGGGATGTAAAGACGCTGGAATCTGCAATGAAAGATCTGAAGATTGTTTAAGTCTCAGGTGTGATCAACCCATTGCAAAAGCAagctaa

Function

symbol description
arpc1a Predicted to enable actin filament binding activity. Predicted to be involved in Arp2/3 complex-mediated actin nucleation. Predicted to act upstream of or within regulation of actin filament polymerization. Predicted to be located in actin cytoskeleton; cytoplasm; and nucleus. Predicted to be part of Arp2/3 protein complex. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to human ARPC1A (actin related protein 2/3 complex subunit 1A).

NR:

description
PREDICTED: actin-related protein 2/3 complex subunit 1A

GO:

id name namespace
GO:0030833 regulation of actin filament polymerization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
K05757 ARPC1A_B; actin related protein 2/3 complex, subunit 1A/1B

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018534 True 2097 mRNA 0.51 16 13885780 13902661

Neighbor

gene id symbol gene type direction distance location
AMCG00018530 LOC108430595 coding upstream 7715 13859895 ~ 13878065 (+)
AMCG00018527 NA coding upstream 100231 13782714 ~ 13785549 (+)
AMCG00018526 fscn1a,fscn1,LOC107742378,LOC107581720,LOC107674660 coding upstream 236688 13639723 ~ 13649092 (+)
AMCG00018523 tnrc18,LOC107742388 coding upstream 350953 13468893 ~ 13534827 (+)
AMCG00018515 cpsf4,LOC107578701,LOC107720053 coding upstream 633535 13246534 ~ 13252245 (+)
AMCG00018533 mmd2,LOC107725363,LOC103909971 coding downstream 38967 13941628 ~ 13960988 (+)
AMCG00018536 NA coding downstream 69889 13972550 ~ 13985601 (+)
AMCG00018547 NA coding downstream 209043 14111704 ~ 14111910 (+)
AMCG00018539 NA coding downstream 257002 14159663 ~ 14161738 (+)
AMCG00018549 NA coding downstream 289477 14192138 ~ 14200344 (+)
G116976 NA non-coding upstream 38688 13846890 ~ 13847092 (+)
G116975 NA non-coding upstream 45809 13839716 ~ 13839971 (+)
G116941 NA non-coding upstream 194413 13666023 ~ 13691367 (+)
G116882 NA non-coding upstream 518752 13366640 ~ 13367028 (+)
G116790 NA non-coding upstream 670428 13129738 ~ 13215352 (+)
G117130 NA non-coding downstream 340203 14242864 ~ 14244203 (+)
G117131 NA non-coding downstream 342047 14244708 ~ 14245318 (+)
G117197 NA non-coding downstream 535331 14437992 ~ 14439091 (+)
G117209 NA non-coding downstream 631302 14533963 ~ 14534200 (+)
G117353 NA non-coding downstream 833435 14736096 ~ 14738327 (+)
AMCG00018520 slc29a4,LOC107703421,LOC107737679,LOC107581724 other upstream 538903 13307898 ~ 13346877 (+)
G116832 NA other upstream 629986 13253343 ~ 13255794 (+)
AMCG00018498 NA other upstream 1273901 12543545 ~ 12611879 (+)
AMCG00018491 slc5a10 other upstream 1365449 12503023 ~ 12520331 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other upstream 1385726 12489467 ~ 12500054 (+)
AMCG00018537 radil,LOC107725399,LOC107722964,LOC107590699,LOC107564693 other downstream 95248 13997909 ~ 14022806 (+)
G117033 NA other downstream 143598 14046259 ~ 14049153 (+)
AMCG00018538 LOC103397138,LOC107554284,LOC100698873 other downstream 238716 14141377 ~ 14145995 (+)
AMCG00018553 cryba4,LOC106568369,LOC106563090 other downstream 286342 14189003 ~ 14191077 (+)
AMCG00018551 NA other downstream 336581 14239242 ~ 14242717 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025624 arpc1a coding NC_007114.7 CM002887.2 40796110 ~ 40804455 (+)
grasscarp (Ctenopharyngodon idella) CI01000046_03643306_03647935 ARPC1A coding CI01000046 null 3642182 ~ 3647935 (-)