AMCG00018551


Basic Information

Item Value
gene id AMCG00018551
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14239242 ~ 14242717 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018551
ATGACCCGGGGGTGGATTCACACCTGCGTGGCACTCGCCCTGCTGGGGGCGGCGGGTGCTGGGCCCCTGGTTGGGCTGGGAGCCCGGGGGCACTGGAGCAGGGCAGCGAGGAGACCCGGAGAGGAGAGTGAAGCAGCGGGAGCAGGCAGGCTGGAGTCCCAGGTCAGGGACAGTATGGTGGGGATGCCAAGGCCGAGGCGGCGGGTCAGGGCGCAGGATAGTCTGCAGCACCAACAAGAGCAGTGCGCCCTGATGACAGGCCCCTGGGTGGAGGCGGCTGGCGGCGGGGGGCGGGCCGGGCAGCTGTACCGTCTCAGGATGGTCCCTCTCTCAGCCGAGGGGCCCCGGCGCGCCGTGTTCCCGGAGCAGCCGCTGTTCCAGTTCGTGCGGAGGGTGTACCGCTGCTGCCAGCTCGGCTTCTCCTGCAGGACCGTGAAGGGCATCCAGGGCCGGATGACCGGAGGTAAGAGCGCTTCTCTGTCTTCCCGTCCTCAGCACAGTCTGTCCAGTAGGAGTATCGAGGCAGAGCTGCATCTGCAGCTCTCAAACCCCCACCGCCTGAGGGTGGAGCCCCTGCTGACCTCGCAGCCCAACCACGCCACACGGTTCGCCATGTCAGCTGCAGAGGGGCAGCTGGACTTGACCCTTGACCTTCTGTTCCTGTTCCCGTCGCTGCAGGAGTCCGCGGGGGGGCATGCTGGCCTTCGGATCACCCATCTGCGGCGGGAGGGGGGGCGGGCCTGGGGGGCGACAGGGCAGGAGCTGGGGGGGCTGCAAGAGCCTCCGCCTGTCACCCTAGGTGGGGGCAGTTTCCCGGCACTCGACCCCGAGCTGGGCCTGGCACTGCGCTGTTTCCATGGCGACACAGCGGTGCCCTGTGCTGAACAAGGGGTGCACCTGCTCCACGCCCCCTTCCTCGCCCTCTCCTACAGGTAG
>TU146730
CAGGCCCCTGGGTGGAGGCGGCTGGCGGCGGGGGGCGGGCCGGGCAGCTGTACCGTCTCAGGATGGTCCCTCTCTCAGCCGAGGGGCCCCGGCGCGCCGTGTTCCCGGAGCAGCCGCTGTTCCAGTTCGTGCGGAGGGTGTACCGCTGCTGCCAGCTCGGCTTCTCCTGCAGGACCGTGAAGGGCATCCAGGGCCGGATGACCGGAGacgcAGAGGTGCAGTTTGTCGTCAGTGGGGATGTGTTCTCAGTGTCCCTGTTCAGGGCAGAGCTGCATCTGCAGCTCTCAAACCCCCACCGCCTGAGGGTGGAGCCCCTGCTGACCTCGCAGCCCAACCACGCCACACGGTTCGCCATGTCAGCTGCAGAGGGGCAGCTGGACTTGACCCTTGACCTTCTGTTCCTGTTCCCGTCGCTGCAGGAGTCCGCGGGGGGGCATGCTGGCCTTCGG
>TU146732
CTGTCACCCTAGGTGGGGGCAGTTTCCCGGCACTCGACCCCGAGCTGGGCCTGGCACTGCGCTGTTTCCATGGCGACACAGCGGTGCCCTGTGCTGAACAAGGGGTGCACCTGCTCCACGCCCCCTTCCTCGCCCTCTCCTACAGGTAGGGTGGGCTGTCTCTGCCCCCGACCTCCGTCCCTGAGGCTCCAGCACTCTGCTACTGGAGATGGAGACGAGACCCACActgcaactgtgtgtgtgtgtgtgtgtgagagacacaATAAGAgggagtgtatgtgtgtgtgtgtgtgtgtgtgagacacaatgagagggagtgtgtgtgtgagagagtttgTTCTTTAAGAAAATGACTAACTTTGTTTGGTCTTTGTGCTGCActtaaaacaagaaagagaaaaatctaatttgttGGAATGGAAGGAAAGCGTTTCCCTGGGGAGGTTGGGGGCGCAGTgctgtaaatactgtatataaccagagatttattgtgtgtgtgtgtgtgtgtgcagccctGAGGCCAGTGCTATGAATactgttattaatgttattactGTTTAATGCTGTCCctgtgtctttgtttgtgtgctACATTAAAGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018551 True 936 mRNA 0.69 3 14239242 14242265
TU146730 False 449 TUCP 0.68 3 14239498 14242037
TU146732 False 601 lncRNA 0.51 1 14242117 14242717

Neighbor

gene id symbol gene type direction distance location
AMCG00018550 NA coding upstream 1293 14232722 ~ 14237949 (+)
AMCG00018552 LOC108412053,LOC101077666 coding upstream 6928 14230990 ~ 14232314 (+)
AMCG00018549 NA coding upstream 38898 14192138 ~ 14200344 (+)
AMCG00018539 NA coding upstream 77504 14159663 ~ 14161738 (+)
AMCG00018547 NA coding upstream 127332 14111704 ~ 14111910 (+)
AMCG00018558 NA coding downstream 118319 14361036 ~ 14367961 (+)
AMCG00018568 NA coding downstream 146309 14389026 ~ 14389346 (+)
AMCG00018570 NA coding downstream 149592 14392309 ~ 14393844 (+)
AMCG00018569 unc119.1,unc119b,LOC107712459,LOC107753165,LOC107550938,LOC107687994 coding downstream 161689 14404406 ~ 14406978 (+)
AMCG00018565 sppl3 coding downstream 177558 14420275 ~ 14431626 (+)
G116976 NA non-coding upstream 392150 13846890 ~ 13847092 (+)
G116975 NA non-coding upstream 399271 13839716 ~ 13839971 (+)
G116941 NA non-coding upstream 547875 13666023 ~ 13691367 (+)
G116882 NA non-coding upstream 872214 13366640 ~ 13367028 (+)
G116790 NA non-coding upstream 1023890 13129738 ~ 13215352 (+)
G117130 NA non-coding downstream 147 14242864 ~ 14244203 (+)
G117131 NA non-coding downstream 1991 14244708 ~ 14245318 (+)
G117197 NA non-coding downstream 195275 14437992 ~ 14439091 (+)
G117209 NA non-coding downstream 291246 14533963 ~ 14534200 (+)
G117353 NA non-coding downstream 493379 14736096 ~ 14738327 (+)
AMCG00018553 cryba4,LOC106568369,LOC106563090 other upstream 48165 14189003 ~ 14191077 (+)
AMCG00018538 LOC103397138,LOC107554284,LOC100698873 other upstream 93247 14141377 ~ 14145995 (+)
G117033 NA other upstream 190089 14046259 ~ 14049153 (+)
AMCG00018537 radil,LOC107725399,LOC107722964,LOC107590699,LOC107564693 other upstream 216436 13997909 ~ 14022806 (+)
AMCG00018520 slc29a4,LOC107703421,LOC107737679,LOC107581724 other upstream 892365 13307898 ~ 13346877 (+)
AMCG00018564 mlec,LOC106579938 other downstream 88124 14330841 ~ 14399539 (+)
G117178 NA other downstream 102373 14345090 ~ 14347741 (+)
AMCG00018567 NA other downstream 166241 14408958 ~ 14412279 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other downstream 531398 14774115 ~ 14777110 (+)
G117383 NA other downstream 543906 14786623 ~ 14788133 (+)

Expression


Co-expression Network