AMCG00018581


Basic Information

Item Value
gene id AMCG00018581
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14554089 ~ 14557800 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018581
ATGCAGATCAGCCCCTCGGATGGTAAGATCCTGCACTTCGGCCGTGTGAAGAACTGCGAGGTGGAGCAGGTCAAGGGCGTCACCTACTCCCTGGAGAGCTTCCTGGGGCCCTACACCTGGACAGACAGCAGGAGCTCTCTCATGTCTGTGAACCCGGGCGTGGCTCGCTGGATTAAGGAGCTGTTCTGCCACAATGAGCGCGTAGTCCTGAGTGGGGAGTGGATGCATGGCTTCTTCTCACTGACCGCCGTCGGGGCCACCAACGAGCTGCACACCAACAGCCCGCGCTACAGCAAGGGCTCCTACAATGACTTCAGCTACCTGTCCAACAACAACCGCGAGGGCGTGAACATGCGCAAGGGCGAGCACCTCGGCGAGTTCAACCTGGGCTCCACCATCGTGCTGCTGTTCGAGGCGCCGCAGGACTTCACCTTCAACATCAAAGCTGGCCAGAAGATCCGCTTTGGGGAGGCTCTGGGGACCAtgtgaggaggagagagagattaggATGGACAGATGCACGTAGGCGCGGGCGGAGGGGCCGGGGGACATGCACTGATGGGACGGAGACATGCACTCACTCGTGCttttttcaaatacacacacacacatatcctttttaaaacacattcaaacacatttcTACATCACATTCTTATCCAAACACGCACTCgtgcacacatacatgcatacacaggaacacacacacacacacacgctaaaCTAGACTACTTGAAGCATTTCTCTTGAATCCCAAGGGGGAGCTTGAATGTACAGGAGTGACACAGAAGCCTCTGCTGCTGCTACTCCCACCACTATCCTCCGCATCCctgcttcctctctctctcgctccctccgTCCACACGACTCCAAACACACACTCTGCTCTCTCGCTGTCTGGCCTCACTCCCACTCCCTGCGCAGTGGCAGTGCCAGGCCTCACTGCGCCGCCGAGAAGAGGAGCGTCcggacacacccacacaaaacaaaggaatggaatgaagaaagaaagaacaaactATTCAAGATATTCCACCAACAgaaaagacattttattttattttggtaataaacaaatgttatgaTGGCATATACTGTATGCACCTTCTATGGTCTTCACTGTTAGTTGTATGCTTGGGCTCAGTTCCACTTCCCATTCCAGAGCCATTCCAAACTCCAGTTCCAGGTCTTTTGGCAGAAGAGACTCGACCGGAACTGAATTGCAAATGGAATTACAAACGGAATTGGAATGGAAGCCCTGGAATTGACCTCAAGCCTggttacttattattattattattgttattgacaAGTTATTTATAGCAACATTACTGCCAATTTTTCTGCCATGCAAGCTTCACTACCAGAAAGGccaaacactgaaaacacaggtaatgaaatgacagaataataataataataatattaataatacctTCACAAAGGAAGCTGAGTGTTGGAGGTTGTTCTGCTGTTGTTACCTTTGGTTTCCCACATCTGAAGTATTGTCAAgttgtgccaaaaaaaaaatctttgcaaaatctattttctttttaaaaaatgaaacaaaaacaaaacaacaaaaaacttttgCTTTTATAACCAGGATTACAGTTTTGCTTTGACTGAGATGCCTACAGTATAACTCATAGTGCTGTTACCTTAACTGAGTTGATTTCTCATGGCGTGTGTGACTGGGactgcgtgtgtgcgtgtgtgtgtgcgtgcgcgtgtgtACACTGTTTTAACTAATAGAATGCTGGGAGTCCAACCTCCCTTCCCCCTCAGAGCTGTCACTCAGCCTGTCaccagaaacaaacagaaatccgATCCTCTGTGGCTGAGTAGCTCCAGTCAGGCGTAGACCGCAGCAGTGCTGATGACAATGCAGGAGCCCAGGGAGAGACCTGCTTTAGTTGCacagtatttttatatgtaCAATGTTTCAAAGGAGATACTTGAATCATGTACTCATTTAACActgcatacatttgaaatattaaaacaatgcaaaagtcATTAATAAATTTTGcctattcttaaaaaaaaataaaatacaaaaaaa

Function

GO: NA

KEGG:

id description
K01613 psd, PISD; phosphatidylserine decarboxylase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018581 True 2065 mRNA 0.47 4 14554089 14557800

Neighbor

gene id symbol gene type direction distance location
AMCG00018582 pisd,LOC107663775 coding upstream 19 14552094 ~ 14554070 (+)
AMCG00018583 NA coding upstream 6609 14542330 ~ 14547480 (+)
AMCG00018575 NA coding upstream 24652 14519852 ~ 14529437 (+)
AMCG00018576 slc5a1,LOC107713298,LOC106563210,LOC105913283,LOC105014972 coding upstream 35070 14511238 ~ 14519019 (+)
AMCG00018578 LOC104951472,LOC102789619,LOC107752382,LOC102207611 coding upstream 50030 14498599 ~ 14504059 (+)
AMCG00018577 NA coding downstream 16460 14574260 ~ 14588028 (+)
AMCG00018585 NA coding downstream 41462 14599262 ~ 14614445 (+)
AMCG00018586 LOC107677981,LOC107567443 coding downstream 72262 14630062 ~ 14646832 (+)
AMCG00018588 bicdl1 coding downstream 149771 14707571 ~ 14731664 (+)
AMCG00018593 NA coding downstream 264191 14821991 ~ 14824758 (+)
G117209 NA non-coding upstream 19889 14533963 ~ 14534200 (+)
G117197 NA non-coding upstream 114998 14437992 ~ 14439091 (+)
G117131 NA non-coding upstream 308771 14244708 ~ 14245318 (+)
G117130 NA non-coding upstream 309886 14242864 ~ 14244203 (+)
G116976 NA non-coding upstream 706997 13846890 ~ 13847092 (+)
G117353 NA non-coding downstream 178296 14736096 ~ 14738327 (+)
G117381 NA non-coding downstream 225706 14783506 ~ 14784333 (+)
G117382 NA non-coding downstream 228225 14786025 ~ 14786487 (+)
G117387 NA non-coding downstream 234996 14792796 ~ 14793804 (+)
G117388 NA non-coding downstream 236085 14793885 ~ 14794239 (+)
AMCG00018567 NA other upstream 141810 14408958 ~ 14412279 (+)
AMCG00018564 mlec,LOC106579938 other upstream 154550 14330841 ~ 14399539 (+)
G117178 NA other upstream 206348 14345090 ~ 14347741 (+)
AMCG00018551 NA other upstream 311372 14239242 ~ 14242717 (+)
AMCG00018553 cryba4,LOC106568369,LOC106563090 other upstream 363012 14189003 ~ 14191077 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other downstream 216315 14774115 ~ 14777110 (+)
G117383 NA other downstream 228823 14786623 ~ 14788133 (+)
AMCG00018602 LOC102789415 other downstream 396764 14954564 ~ 14981705 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other downstream 2510412 17068212 ~ 17069670 (+)
AMCG00018681 NA other downstream 3423340 17981140 ~ 17983017 (+)

Expression


Co-expression Network