AMCG00018623


Basic Information

Item Value
gene id AMCG00018623
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 15772309 ~ 15777303 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018623
TTTCATTGCAGTTACTGCTCTGTGCTGAGTTTCTGTTTATCAGTAAAATCACGATTCACGTCTTACTGGAATTAATAAAGACGATCAGGGGGTGGCTGAAATGTTCTCCACTCCTGATGtgcttttaattacagaacCCAAGCTAGTCAAAGGTGTAATTAACAAGAGAATGGCAAAGCAGAGGGTGACATGCTGAAGCACTCTAAAGGGCACAATCGCAGCTGTGCTTTGACTAGGGCTACTCTGGTACTTCCCACTGCAGTACATTTAGGGAGTAACAGGAGGAGGAGGTTGTTCCCCAAGAggatattttacaaattaaaaactgaagagTTAAACCAAGAGTTAAATGATTATGACTGACAAGGCACTTTCTGCCTTGTTTAAACTGGACAGTGTTTACTTTGGGAGACAAAGTTCACAGAAAAAACAGCTCCAAAGCTCCAAAGCTTGCGGAGAGGCGCTCACTTCACTGCCTAGGAAGGCACAGAGATTCTCAGGATGTGGTTCTTAACCGTAGTCACTCTGGCATGTCTGCTCGCCTCCCCTTCCCTTGCCGGGGTAAAGGACCTGGGTATTCACTTTAGCCCGAGTGGCACTGTGCAGCCGATTGGCCCCCGGGGGCCGGCTTCTGGAGGGGCCCCAGACATGGAGGCCATTCCACCAGAGTTCCACAAAGAAAACACGGTGACGAACGACCTCCCCTTTGATGGTGGCTTTGAGGAGGAGGACTACATTGACTTCGAGAAGCTGCTGGCAGAGGATGATGACTACAGTGATGCCATTGATGAGATTGACACGCCAGTCCAGGGAGTGATCATCACTGCGCCCACTGACCCGCAAGTGAGGAAAGCCCAGCTGCTGCAGCTCTTCCATGGCCAGACCAGGCTCCAGCGGCTCAGCACAGTCAACGCTGACTTCGGGTTTAAACTCTACCGGGTCCTGAGGAATGCTGCCAACCAGTCTGACAACATCCTGTTCGCTCCTGTGGGCATCTCCATCGCCATGGGCATGATAGACCTGGGCACCAAGCAGCTCACCCATCAGCAGATTTACCAAACGTTGGGCTTTGGTGACTTCGTCAATGTCAGCTCCATGTACGAGGACCTGACTGTACACAAGCTCTTCCGCAAGCTCACCCACCGCCTGTTCAGACGCAATTTCGGCTACACGCTGCGCTCTGTCAACGACCTGTATGTGCAGAAGGAGCGCCCCATCGTGGACTCCTTCAAGTCCAACGTCAAGAACTTCTACTTCGCCGAGCCCCAGTCCGTGGACTTCAGAGACCGAACGTTCCTCAGCAAAGCCAACCAGCGCATTGTGAAGATCACCAAGGGGTTGATCAAAGAAGCGCTCAAAAGTGTCAATCCGGACACGGTGCTGATGCTGCTCAATTACCTGTACTTTAAAGGCACCTGGGAAAACAAGTTCCCCGTGGAGCTGACACACCACCGCAGCTTCCGTGTTAATGAGCGACAGACGGTGCGTGTGCCCATGATGCAGACCAAGGGGAACTTCATGGCCGCTGCCGACCACGAGCTGGAGTGCGATATTCTGCAGCTGCCCTATGTGGGCAACATCAGCATGATGATCGCCTTCCCCAGGAAGCTGTCAGGCATCAGGACCCTGGAGAAAGCGATCTCGCCCACCGTGGTCAATAAGTGGATGAGCAATATGACTAACAGGCACGTGCCGACCCGGGAAGTGGTTTTCCCAAAATTTAAGCTGGAGAAGAACTACGACCTGATTGGATACCTACAGGAGATGGGGGTGACAGAGCTGTTTGAGAAGACAGCCGACTTCAGCGGAATGACATCTGAGAAACTCTCCATTGACCTGTTCAAACACCAGGGTACGATCACGGTGAATGAGGAGGGCACAGAGGCAGCCGCGGTGACCACGGTGGGGTTCATGCCGCTGTCCACTCAGATCCGCTTCATTGTGGACCGacccttcctcttcctcatctACGAGCACCGCACCAGCTGCCTGCTCTTCATGGGGCGTGTGGTCAACCCCCTCAATAACTAACCAACCGCCACTAAAGAATGGGTAGCAGGAGACAAAGCTGCTGCCTGCCTTCTCCTCAGAGAGAAGCAGAAATGTTTGTTGCCTGCTCCTTTTCATTTAGCTGAAGCAATGGGTGaaagaagtatatatatatgtacatgtgtgtatgtatgtatctataactataataatttaaaaatcttaaagaaatgtatacatttaaattaaaatgaaaaaataaatactttatctAGTCATGGATATATTTATCATTTCGGTCTCAGCCGGTTGATAAGCAGTATCttctaacaaataaaataattgtcgTCATTTCCTAATGAGAGTCAGAAGTGCTGAATTCTGTCAGGCCAGGGGAAGCTCCGGTCAATAAAATGGCAGACTCTGTGCCAGTGCAGGCCACACCACAGGAGGCCCTGTTACAGAGCTAATCTTAGGGTGGGACAGAACTTATTTGTTGCATTTCATACCAGGCCGGAGATGAATGAAAGCCCCAGCTTTGCTAATGGATCCAGGATTTCACTTTTAATCCCTGAAAGTGATTTTGCTAAAGATGTTTCGACACACACAGTCTCTTTTCTGTTCCATGCAAGATAGCTTATTACTTAATTTTTGCATCACTAGcctttcttaaatattttttgcaggCATGTTCTATGTACACCAAACTATACAATTAAAGCTTGCATgtcaaatgaaaatgttgtgacCTATATTATTAAATTTAGTGTGGCTATGATCTATTCAAACAGAATGTGGAAAacgctttttttgttttttgggaaaCAGGGTCAATGACAGGACATCTTTGTATCAATAGCACGGCACATCAACATCTTGTTATGCAagctgtgtaaatatttgtctcGAAAGTGAAACATTAACTGAAAAGTGGACTCAAACTGATTAACCCTGTTACCTGAAGCAATTGccttcattaataaaacaatcataaataaaaactagacataacaaaaacaagcatgGCTTGATACAGGTAGCGGACAAGATATTAAAATCGCACGCTAATCAGTCACAAACCGTTTCCCAGGAGTTAAAAGGAAACTGGTGTGCATAGCGAGATTTATTTGAGTACCACAGTACCAGCAAACACTACAACAAACAGTTTCGACAGCAGGGTGAGGAAATATGTAACAGTGCAGCGTCAGTGTTTACTGTAGTGAACTGAATAAACTGTACCTTGTTTTCTAGGAGTATCTGGGAGCTCGGCCGTCTCTGGCCACACAGAGCACAGTGTTCTTTAAAGGGGACAATGCAGCTCAAGGATGGCACTGATAGTTTCTAACTCATTTACAGTACCCCCCCTTGTCACTTCCCAATGTTTTCAGAGAGCACTGAATAAGCACCACCCGAGATCAAGAGAAATATATTTAGTCGGTTCTTACCACAGCAATTACTGGAATGAGCACCCCCAGATTGCCAGCACTGCTGGACGCCTGCAGagaaaacataataacattaatCTTCATTGTCTTAAAGTCACGTTACATCTCATTCTTTCTGTATACAGCTTCAAAATCTCATCTTGTGTgtcacctttttattttttaaattgccattaaaaataaaataaaaaattaaaacaatttgtaataAAGGTTGGCTGTAAATGTGAG

Function

GO:

id name namespace
GO:0005615 extracellular space cellular_component

KEGG:

id description
K03912 SERPIND1, HCF2; heparin cofactor II

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018623 True 3665 mRNA 0.46 5 15772309 15777303

Neighbor

gene id symbol gene type direction distance location
AMCG00018624 NA coding upstream 80568 15682455 ~ 15691741 (+)
AMCG00018620 NA coding upstream 102640 15668815 ~ 15669669 (+)
AMCG00018618 NA coding upstream 124134 15637974 ~ 15648175 (+)
AMCG00018619 NA coding upstream 187222 15583593 ~ 15585087 (+)
AMCG00018611 ppil2 coding upstream 303927 15430284 ~ 15468382 (+)
AMCG00018625 NA coding downstream 8590 15785893 ~ 15790897 (+)
AMCG00018630 tbx1,LOC102781442 coding downstream 234984 16012287 ~ 16025098 (+)
AMCG00018635 NA coding downstream 478894 16256197 ~ 16278801 (+)
AMCG00018637 NA coding downstream 503530 16280833 ~ 16286663 (+)
AMCG00018638 ranbp1,LOC106580467,LOC107684983 coding downstream 518735 16296038 ~ 16298711 (+)
G117573 NA non-coding upstream 73444 15695426 ~ 15698865 (+)
G117574 NA non-coding upstream 77056 15693213 ~ 15695253 (+)
G117557 NA non-coding upstream 144590 15627339 ~ 15627719 (+)
G117521 NA non-coding upstream 242968 15492246 ~ 15529341 (+)
G117380 NA non-coding upstream 872391 14855079 ~ 14899918 (+)
G117660 NA non-coding downstream 306050 16083353 ~ 16121445 (+)
G117768 NA non-coding downstream 971566 16748869 ~ 16749971 (+)
G117783 NA non-coding downstream 1231595 17008898 ~ 17009246 (+)
G117801 NA non-coding downstream 1376479 17153782 ~ 17155824 (+)
G117804 NA non-coding downstream 1383459 17160762 ~ 17161040 (+)
AMCG00018602 LOC102789415 other upstream 790604 14954564 ~ 14981705 (+)
G117383 NA other upstream 984176 14786623 ~ 14788133 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other upstream 995199 14774115 ~ 14777110 (+)
AMCG00018567 NA other upstream 1360030 14408958 ~ 14412279 (+)
G117178 NA other upstream 1424568 14345090 ~ 14347741 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other downstream 1290909 17068212 ~ 17069670 (+)
AMCG00018681 NA other downstream 2203837 17981140 ~ 17983017 (+)
AMCG00018702 NA other downstream 2941903 18719206 ~ 18721343 (+)
AMCG00018712 NA other downstream 3050294 18827597 ~ 18840095 (+)
AMCG00018717 trpv4,LOC106585668 other downstream 3117032 18894335 ~ 18908956 (+)

Expression


Co-expression Network