AMCG00018624


Basic Information

Item Value
gene id AMCG00018624
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 15682455 ~ 15691741 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018624
atggtgGTGGTGTGGGGGGTGGTACAGGGGTGTGAAGAGAAGGTGGAAATGGAACTGCCAAATCATGCCAAACAATTGCTGCTGCAGCTGAATCAACAAAGAGCCAAAGGGTTTCTCTGTGACGTTATCATCGTGGTAGAAAATGCACTCTTTAGGGCGCACAAGAACATTTTGGCGGCCAGCAGCATATACTTTAAGTCCCTGGTCCTTCACGACAACTTGATCAATCTGGACACTGACATGGTCAACCCGTCAGTGTTCCGGCAGATCTTGGACTTTATTTACACTGGCAAGCTTCTATCGACGGATCAAACCAGCGATCAGAATTTCAACGCCCTCCTGACAGCAGCAAGCTACCTCCAGCTCCACGACCTGGCCGCCCTCTGTAGAAAGAAGCTCAAGCGCAACGGAAAACCTCTGCCCAGCAAGCCTACTACCCCCAACGCAGGGAGGCCTCTTCGGAACCAGAGGCTGTCCTCCACGCCGGTCATTCAGAATCGCTATTCAGGGTCAAAGGATGGTGTGAAGAAGCAGATCGAAGAGCTGCCCAAGGACAAGCTCGCAGACGTCGAGATCTTTATCAGCAATTCCAACGCTGAAGGCTCCAACTCCTTGAACAGGGTGACAAACAACAACACCGGGAGCAACGGGAATGTCAGCAGCTCCGGCGATCAGGAGCTGGGCCTCGACCTGTCCAAAAAGAGCCCCTCTTTGTGCACGACCCAAGAGGAGGTCAGTCCAAGCAGCATCCAACAGGAATCCCCTCAATCTGCCTCAGTATCCACAGCCAACAGTGCCTCTTTTGAAGACTCCATCACAAACCCTCAAAGCCTGGACAGTGGGGAGCCCATGGATTTGGGCGGGGGGGGCTGTGAGGAGAGCAAGTCCCTCCCTGACACGGGACAGCAGTGCAAGAGCACGCGCCACTCTGGTCGCAAGAAAGAGTGGCCTAAAAAAGAGAACATAGCCTTGGAGAGCACCAAAGCTGACGATGACAAGCCCATGCCCAACGGCGTCATCGTGGGGCCCAAGGGTGCAGACCACAAATCCAGCACTGGCAGtggctgcagcagcagcagcgtggGCTACAACTCGGAGCACTCCTTCCAGTGCAAAGAGGAGGATGTGGAGAACGGCAAGGATAACAGCGAGGAGAGCGGCCACAGCGAGAACGAGAGCGGCCACACGAGCGCCAACTACGTCTACCGGCAAGAGGGCTTTGAGCCGGTGGCCTACGGGGACAACCTGTACGTGTGCATCCCCTGCGGGAAAGGCTTCCCTAGCTCGGAGCAGCTGAACGCCCACGTGGAGACGCACACAGAGGAGGAGCTGTATATCAAGGAAGAGGATTCCTACATCAAGGAAGAAGCGGAAGACCTGTCCACCCAGAATGCATCGTTCGGCACCGAGGCACGACCCTTCAAGTGCTCGGTGTGCGAGAAGAGCTACAAGGATCCCGCCACCCTGCGGCAGCATGAGAAGACCCACTGGCTCACCCGGCCCTTCCCCTGCAACATTTGCGGCAAGATaGCATATGGAGGCTCtctgtga

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018624 True 1551 mRNA 0.56 3 15682455 15691741

Neighbor

gene id symbol gene type direction distance location
AMCG00018620 NA coding upstream 12786 15668815 ~ 15669669 (+)
AMCG00018618 NA coding upstream 34280 15637974 ~ 15648175 (+)
AMCG00018619 NA coding upstream 97368 15583593 ~ 15585087 (+)
AMCG00018611 ppil2 coding upstream 214073 15430284 ~ 15468382 (+)
AMCG00018603 ufd1l coding upstream 728192 14949636 ~ 14954263 (+)
AMCG00018623 NA coding downstream 80568 15772309 ~ 15777303 (+)
AMCG00018625 NA coding downstream 94152 15785893 ~ 15790897 (+)
AMCG00018630 tbx1,LOC102781442 coding downstream 320546 16012287 ~ 16025098 (+)
AMCG00018635 NA coding downstream 564456 16256197 ~ 16278801 (+)
AMCG00018637 NA coding downstream 589092 16280833 ~ 16286663 (+)
G117557 NA non-coding upstream 54736 15627339 ~ 15627719 (+)
G117521 NA non-coding upstream 153114 15492246 ~ 15529341 (+)
G117380 NA non-coding upstream 782537 14855079 ~ 14899918 (+)
G117389 NA non-coding upstream 885305 14796531 ~ 14797150 (+)
G117388 NA non-coding upstream 888216 14793885 ~ 14794239 (+)
G117574 NA non-coding downstream 1472 15693213 ~ 15695253 (+)
G117573 NA non-coding downstream 3685 15695426 ~ 15698865 (+)
G117660 NA non-coding downstream 391612 16083353 ~ 16121445 (+)
G117768 NA non-coding downstream 1057128 16748869 ~ 16749971 (+)
G117783 NA non-coding downstream 1317157 17008898 ~ 17009246 (+)
AMCG00018602 LOC102789415 other upstream 700750 14954564 ~ 14981705 (+)
G117383 NA other upstream 894322 14786623 ~ 14788133 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other upstream 905345 14774115 ~ 14777110 (+)
AMCG00018567 NA other upstream 1270176 14408958 ~ 14412279 (+)
G117178 NA other upstream 1334714 14345090 ~ 14347741 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other downstream 1376471 17068212 ~ 17069670 (+)
AMCG00018681 NA other downstream 2289399 17981140 ~ 17983017 (+)
AMCG00018702 NA other downstream 3027465 18719206 ~ 18721343 (+)
AMCG00018712 NA other downstream 3135856 18827597 ~ 18840095 (+)
AMCG00018717 trpv4,LOC106585668 other downstream 3202594 18894335 ~ 18908956 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_001826 hic2 coding NC_007121.7 CM002894.2 3145707 ~ 3155957 (+)
grasscarp (Ctenopharyngodon idella) CI01000178_01005914_01007599 HIC2 coding CI01000178 null 1005698 ~ 1007760 (+)