AMCG00018641


Basic Information

Item Value
gene id AMCG00018641
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 16419039 ~ 16434303 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018641
ATGGTGCCCACGGTTTGTAAACCCAGCCTTGAGGAACTTGTGGCCATGggatacacacaaacacatggggAGGCTGACATCACTTGGAAGGTGTACTTTGACTGTGGAGCTGTGGTGGATGTTGTAGATGAGCAAGGCCTCGTCTTGTCTCCAGGATTTCCCTACAACTACTCCTCAGGGACGCACTGTGTGTGGCAGTTCTTTGTGCCAGTCGGCTACAGATTGACAATGGAGATGtttgattttgatgtttttgaGAGCCCTGAAAGCCTAGACCTATATTTTCCAACCCCCGAAGGGATACCCGAGGAGAACAATGATGAGACTGTGTCAACCCCTAGGGGTTCAATCAAGGATAACGTGGCATCTCCAAAAGGCTCCTCAAATCAGACACAGGTGTCCACCACGAATGCCTCTCGTGGTGACAATCAAGGACTTTCTGTGATGACATCCAAGAAGGATGACGGCAGACAAGTTGTAGTCCAGGAGCAGTCCACCAAAATGGAGATGACCAAGATTTCCAACTCTGCCAAACGGTCCACTGAACTCCTCTCTGCACCACCGCCGCCCCCTCCTCTGACCCAGGGCGTTTTATCACAGGCGCTGAAGGGCAACACGAGAGAAGAAAACTCCATCTCGGTACAGGCCTACAGGGGAGATGCTGACCCGGATGAAAAGTTCGTCCAGAGCAAGCTAGACGACAAGGGGAATGCGACGCCCACTCCAGAGACGGCCACGGGAGCCAATGAAAGTGAGGCGGACTCCCAGCCCCCCCTTATGGAGGCCTGCCCCCATGATGTTCTCTACATCTCGGACCTCATCACCTTCTCCTCCCGCTTCTGTGGTTCCAACAAGCCCACCGGCCGCAAGCTGGTCTTCGGCTCCTCGGAGGAGATGGTGGAGGTGATAATGGAGCTGATTACAACCACCCACTGGGGGCGAGGCTTCGTGCTGCTCTTTCAGTACCGCAACGAGACCGACCCAGACGATGCCCACTTCCCACAGCCCACCTCCAGCAGGACGGATGCTCTCCTGGCTGCCATGAGTGGGGCGGCCTTCTTTGTCATCATCCTCACAGGGGCTCTGTGCATCATCTTCAGaccAAAAATATGCGTGAAAGGAGCCAATGCCTGCTCATCCAACAGTCCAGAGCCTGGCCTGGATGTTACCAGtgacaatgacaacaacaaccatTCACTGATCCCGGCACAGACAGGTCCCTCAGTCAGCGGAGGGGTGGACATTTCCCACGATGTCGAGCTGGAGCTGTCCTCCAATGGAATGACAGAGCTTGAATTGGGTGCTGATGAGGTGTTTGTCATTTCTCCTGGACCCGCTCCAAGTCACCCAATTTTCTCTCCTGTCCTGAAAGACAGGTTCCTGAGGAAGAGCGAGACCAGTCCGGGCCCGGTGTGTGACTGGCTGGCCGCAGCTGCCGGGGGCCGAGGGGGGAAGGAGAGCGCCCCCAGCCGGAGCCGAGCCTGGAGTGTCCGCACCTTCCAAGACTTCCTGCCCCCTCTGCCCCAGCTGCACAGGAAGTGGTGTAGCTGGAACTCCACCAGCCCCTTCACCAAGCTGGTGGACAGCGTGGGTGCCAGCAACGCACAGGCATCTGCCAGCTCAGTAAGCGACTGTCGCAAAGCGAGAGGCAGGAAGGATCACTCAGACGCCCACCTGGAAGACGCCATGATGGAGAACCACCACTCCGACTATTACCCCCCAAGTCAGCCCTCACAGAGATCGCATCGTCTCAACTCCACCAGCAACCTGCGCAGGGCCAGATTCGTCGCCCCCTGCTTTGGGCTGCTGACCAGCTCCCCTGAAGGACCCCGGAGTCCCACTGGTCCCCTGGTGTCCAGTCCACACCCCCACGACGGTGCCCTGCATGTGACGAACGGCTCCCACACAATGGAGCAGGGCAAGGCGAGAGATTTCCCCAGCGAGGGGGAGCACGGCCTCGTCCCTGTGTTCCCCATCTCTGAGGAGGAGGACCGCCAGCCCCTGGTCCTCACGGAGCACCTCGGCCAGTGTGCGGAGCGGGACCCATACACTCAAAACATgcaggagagcaggagccctggcGGCCAGCGAGCGCCATTTACAGTCAACGGTGCTTCGTTTAGCCAGCAGTGCGTGCCCTCCGAGTGGAGCCCATGGGGAAGCCAGCACCCCGAGGACACCTGTGGCGATCCCTCAGAATCACAGGCCCAGAATGCAGACCAAGCCGAGTCGCACTGTTTATACAGCAAAGCTACTCGGATCCCATCTTGCTCTATGAACCCGATAGCCACTGGCCCACCATGTGGTGTGCTGGGCGAGCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018641 True 2322 mRNA 0.58 7 16419039 16434303

Neighbor

gene id symbol gene type direction distance location
AMCG00018636 pgam5,LOC107089933 coding upstream 40338 16373896 ~ 16378701 (+)
AMCG00018638 ranbp1,LOC106580467,LOC107684983 coding upstream 120328 16296038 ~ 16298711 (+)
AMCG00018637 NA coding upstream 132376 16280833 ~ 16286663 (+)
AMCG00018635 NA coding upstream 140238 16256197 ~ 16278801 (+)
AMCG00018630 tbx1,LOC102781442 coding upstream 393941 16012287 ~ 16025098 (+)
AMCG00018648 NA coding downstream 637051 17071354 ~ 17090022 (+)
AMCG00018647 LOC106592780 coding downstream 707086 17141389 ~ 17149356 (+)
AMCG00018654 NA coding downstream 818852 17253155 ~ 17256857 (+)
AMCG00018655 NA coding downstream 856399 17290702 ~ 17296987 (+)
AMCG00018659 taok3 coding downstream 1112657 17546960 ~ 17574431 (+)
G117660 NA non-coding upstream 297594 16083353 ~ 16121445 (+)
G117573 NA non-coding upstream 720174 15695426 ~ 15698865 (+)
G117574 NA non-coding upstream 723786 15693213 ~ 15695253 (+)
G117557 NA non-coding upstream 791320 15627339 ~ 15627719 (+)
G117521 NA non-coding upstream 889698 15492246 ~ 15529341 (+)
G117768 NA non-coding downstream 314566 16748869 ~ 16749971 (+)
G117783 NA non-coding downstream 574595 17008898 ~ 17009246 (+)
G117801 NA non-coding downstream 719479 17153782 ~ 17155824 (+)
G117804 NA non-coding downstream 726459 17160762 ~ 17161040 (+)
G117805 NA non-coding downstream 727211 17161514 ~ 17161723 (+)
AMCG00018602 LOC102789415 other upstream 1437334 14954564 ~ 14981705 (+)
G117383 NA other upstream 1630906 14786623 ~ 14788133 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other upstream 1641929 14774115 ~ 14777110 (+)
AMCG00018567 NA other upstream 2006760 14408958 ~ 14412279 (+)
G117178 NA other upstream 2071298 14345090 ~ 14347741 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other downstream 633909 17068212 ~ 17069670 (+)
AMCG00018681 NA other downstream 1546837 17981140 ~ 17983017 (+)
AMCG00018702 NA other downstream 2284903 18719206 ~ 18721343 (+)
AMCG00018712 NA other downstream 2393294 18827597 ~ 18840095 (+)
AMCG00018717 trpv4,LOC106585668 other downstream 2460032 18894335 ~ 18908956 (+)

Expression


Co-expression Network