AMCG00018666


Basic Information

Item Value
gene id AMCG00018666
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 17786712 ~ 17789440 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018666
CTAAGATCCAAGCTGGTCATTTATCAGCAACACATAGGTACATCAAAAAACTTTGGGCATTGTATTTATGAAGTCAACAGCAGattTTCTGAATGCTCTACTCGCCATGTGTGTGGTGATGTCAGAGATCACTGCCAGTCCAGTAACCAGGAGTTTCTCATGTCCAGAAATCTCTTGTCAATGCAAGAAGACACGGGAGAAAGCTATACTCTTGGCATAtctcatgaaaaaaaacatggataGCCTCTTAGAGACATATACAAAATTAAACGCAATTGCAAAAGACACATGTACCGAAATGGAAGATTTGCCTGTGCTGCAGCCTGGGGACAGGAATGACACCGAGAGCCACCAGCTGATCCGCCTGAAGAACGGTCTGTTGTTCATTAATGCTGCACTGAAAACGATCATAACAGAGCAACAGGACCTAAACCCTCAAGCTGATGACTTTCACACCAACCTCAACGAGACACAGGCCAGAACAACAGATCTGACCATTCACGTAGACTGTATCCTGTGTGTAGAATTCAATATTTCTGTGCTGGGGAAACTCCCTCATCTCAACTACCCTTCTGCCGTATTTCAACGGAAGAAATGGAGTTGCTCACTCATCAGACGCTCCTCTTTGTTCCTTTCTTGGGCGGCTGCCGTCATGAAGGCACTTGTCTGCTCTCTGGCCACGGCACCGTGAAGCCCCATCTCTTATCCGCAGCCAAGCAGGGTCATTCTGCGGAGTCAGCTCTTGAATGGGatataacaaaacataaaaaacaggtTGCTGCTGATAGTATTAGTTTCATGATATTCCTCTGAAGtgggtgtgtgcatgtataAACACCCACATACTGAGGAATATCAGTCTTTTTCTAGACCGTTGGGTGGGTCGTGACGAGGGAGGGGTAGGGGGTATGCTCTTGGTCTCGAGGTTATGCTATGATACAATACAGGGATTTCCCAACATGGACCACAGcgctttttttccatttcattcacCAGGCATCTTTCAGAAACAATCTACAGGATATACTTGAGACTTTCATGAATGtaaactgttgtttttattgacatGCAATGATTATGGTACTTGAGCctctatttttctatttattgtcATTGTCGAATAtttgctatatttatataattgttaatttatttgtataaactatattttctattattacaaaatattttgtgacA

Function

GO: NA

KEGG:

id description
ko04672 Intestinal immune network for IgA production

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018666 True 1197 mRNA 0.42 3 17786712 17789440

Neighbor

gene id symbol gene type direction distance location
AMCG00018665 NA coding upstream 4012 17779697 ~ 17782700 (+)
AMCG00018667 gatsl3,LOC100696475 coding upstream 16176 17752323 ~ 17770536 (+)
AMCG00018672 nipsnap1,LOC106579802 coding upstream 37593 17742952 ~ 17749119 (+)
AMCG00018671 NA coding upstream 46591 17732579 ~ 17740121 (+)
AMCG00018670 nos1,LOC102776628 coding upstream 58552 17704494 ~ 17728160 (+)
AMCG00018673 NA coding downstream 8513 17797953 ~ 17803948 (+)
AMCG00018668 NA coding downstream 17567 17807007 ~ 17823600 (+)
AMCG00018679 nf2,nf2a,LOC108431713,LOC107726729,LOC107599150 coding downstream 51312 17840752 ~ 17866985 (+)
AMCG00018678 LOC104923679,LOC100329495,LOC107386260,LOC102231850,LOC107599169 coding downstream 144305 17933745 ~ 17959525 (+)
AMCG00018685 prodha,LOC100695866,LOC108439536,LOC107373658,LOC106514456 coding downstream 233587 18023027 ~ 18035628 (+)
G117887 NA non-coding upstream 201600 17584751 ~ 17585112 (+)
G117813 NA non-coding upstream 533689 17250869 ~ 17253023 (+)
G117808 znrf3,LOC106584905 non-coding upstream 562103 17224012 ~ 17224609 (+)
G117805 NA non-coding upstream 624989 17161514 ~ 17161723 (+)
G117804 NA non-coding upstream 625672 17160762 ~ 17161040 (+)
G117959 NA non-coding downstream 189571 17979011 ~ 17980939 (+)
G118005 LOC101154678 non-coding downstream 428363 18217803 ~ 18218099 (+)
G118013 NA non-coding downstream 676928 18466368 ~ 18730812 (+)
G118043 LOC104945943 non-coding downstream 884834 18674274 ~ 18676226 (+)
G118285 NA non-coding downstream 1666702 19456142 ~ 19456983 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other upstream 717042 17068212 ~ 17069670 (+)
AMCG00018602 LOC102789415 other upstream 2805007 14954564 ~ 14981705 (+)
G117383 NA other upstream 2998579 14786623 ~ 14788133 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other upstream 3009602 14774115 ~ 14777110 (+)
AMCG00018567 NA other upstream 3374433 14408958 ~ 14412279 (+)
AMCG00018681 NA other downstream 191700 17981140 ~ 17983017 (+)
AMCG00018702 NA other downstream 929766 18719206 ~ 18721343 (+)
AMCG00018712 NA other downstream 1038157 18827597 ~ 18840095 (+)
AMCG00018717 trpv4,LOC106585668 other downstream 1104895 18894335 ~ 18908956 (+)
AMCG00018732 NA other downstream 1433728 19223168 ~ 19234351 (+)

Expression


Co-expression Network