AMCG00018667 (gatsl3,LOC100696475)


Basic Information

Item Value
gene id AMCG00018667
gene name gatsl3,LOC100696475
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 17752323 ~ 17770536 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018667
GTCGGGTTGCGCCGCCGCTCGTTTTGGAGCTGGTGATGTGAGGCAGAGCAGGCGCCGGGTCAGTGGGGAGCGGGCCTGCACAGCGACGCGTCCGGCCTGGAGCAAGGGTTCACTACCGGGGCTGAAGAAAATGGATCTGCACATCTTAGATCATAGGCTGAAAGTGACTAGCATCTGTAAAGACGGGTTGGTGAATTTCACGCACCCATTGATCAAACTCATTTTTCTCCGGAACAGGACGAGGTGCAAATTCTTTAGCCTGACTGAGACCCCTGAGAATTATACTGTGGTACTTGATGAGGAGGGATTCAAAGTTGAAGGCTCCACCTGGCTGCCTCTCAATGTGGTCTCCAACGGCAATGCCTCCAGCAGCTCCCAGGCCGTGGGGGTCACCAAGATCGCCAAGTCCGTGATCGCCCCGCTTGCTGAGCAGCACGTGTCTGTCTTCATGCTGTCTACCTACCAGACAGACTTCATCCTGGTGCGAGAGAAGGATCTACCTGTTGTCATCCACACCCTGGAGGAAGAGTTCAACATCTACAGAGAAGAAGGCGGGGAGTCTGTCCCGGTGCACGGCAAAGATGTACGCAATGGATTTCACAAGAATGGCAGGGAAGCCATGAAACCCATTGTGCATCCAGTGCTGAGCCCCCAGAACCAGTTCTGTGTGATGAGTTTAGACCCTGAGACTCTGCCGGCCATCGCAACCACTCTCATCGATGTGCTCTTCTACTCCAACAGtGCAAAAGATGGTGCCCATCCCACCCAGGCCCTGGACTGTATCAagttcttctccttctccctgaTTGAGGGCTACATCTCCCTCGTCATGGACACCGAAACGCAGAGACAGTTTCCTAGCAACCTGCTCTTCACCAGTTCCTCGGGTGAATTGTGGAGAATGGTGCGCATTGGGGGACAGCCGCTGGGATTCGATGAATGTGGAATCGTTGCTCAGATCTCCCAGCCGTTAGCGGATGCTGACATTTCTGCCTATTACATCAGCACTTTCAGCTTTGATCATGCTCTGGTGCCTGAAGAAGACATCAGCAGTGTGATCGACATGCTACAACAGCAGCGGACGGAGCCTTCGCACTGATTGTGAATGCACGCACCCAGCCCCGGGCCTCTTTGCCTAGATGGGGGATAAAAAACAGTAGAGAGAGACTCCTTCAGTGTTTGGAATCACACTGAAAACCAAACTCAGCAGTATTATCATGAACCAGAAGAAGCCTTACGTGACGTGGTCTTGAGGTGGTCAGTTACTGAATACAAATATGCAGAAAAGGATTCCTTATTTTACACGCTTCAGCCTGACACTGAAGCTACAGGCAGTGGCAGGTGGCatggttggttttgttttcaaatgcagtgCACTTATTTTTCACAGCCGAGTCTTCCGGTGTGCTCATCCCCGAGTTGTCAGTTTTCTTCTCTCATGGGGTACTTTTCTGAATCTAGTTTTAGGAATGCATAGCCGATTACTGTGTGACAGGAACGGGACAGtgttaaagaaatgaaaaggagGCACTTGGAATGTGGAAACTTGAAGGAGTTGGGAGgttttggctttgttttgtattcgtttttcagtgtttctttttgttcctTTCGGAAGTACCACCTTGATGCACGTGATTCACCAGGGTTCCCCTGCATCTGCTTCCAACAAGTCACACAATAGTACTGTACTATCCTGTAAAGCTATGCAGGAATGCTTTTCAAtgcataaatattacaaaattgaacaaaaactaaatgtgtattattggATGGGTTTCTGgccctttcattttcatttaagtgAAAGTGTTGATATTCTGGATAGCAGCAGCTAGCCACGCAGCCTATAAAGAGGACTGTGAAGGTGCGAGGATTACGTGATCATTCCAGCATATCCGTCAgggagttttcatttttatttaaaaaaatttttAAAGCTTATCAAAGAATGACAATATAATCTCATTCTTGTTTTCCAGTTAAGTCAGAGAGTGACCATTAATCTATGGTCTTAACAGAGACTTGactcattgtttttattcagacTATTTGTAGAGTAAGCTATTTTCTGTGAGTCTACGTCCGTTCAAGTTCTTCACCGATTCATCTGAAATTCTTCAGAATTGTAGTGGTCTGTTTAGTGAGTTTTGCTCTTTGTTCCACCACACCCCTCTCATGTCTGAACATCGAAGCATGCTTCTCAACCATGCAAAATGGATCAATCCAGTGCAAACTGCATTGTGTTCTTATTGGAAGAGTTGTTCTACTTGCTATTTAAGTTTTACAGTAACttcaaaagcacaaaacaaatgtggaagGAGAAATGATCCCTTTCAAATGGAAGATAACTTTATTTCGGTGGTTCAGGTAATATTCTGGCCTTTCACTGCAACACTAATCCATTTATACTACATTACTTTAGGATTATTCCCAGGAAGAAGAGATCTTAATGTCACCCCATGATATAAGCTGTAGACTATTAATTTCAAGGGTTAATTTCAGTTTGTACTGCACCTTGAGACACTACTGatttgtggcttttttttttctctcctcgtGCATAGCAGTACAatgactgtttttgtttcactttggaAGATTTAATACTTCTTTCTTCCCAgtataataacattttgtacaatagttttatgtaaaacatttgtaaatgagCTGctttattcaataaaaaatgattgaattTCAA

Function

NR:

description
GATS-like protein 3

GO: NA

KEGG:

id description
K23080 CASTOR1; cytosolic arginine sensor for mTORC1 subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018667 True 2707 mRNA 0.45 9 17752323 17770536

Neighbor

gene id symbol gene type direction distance location
AMCG00018672 nipsnap1,LOC106579802 coding upstream 3204 17742952 ~ 17749119 (+)
AMCG00018671 NA coding upstream 12202 17732579 ~ 17740121 (+)
AMCG00018670 nos1,LOC102776628 coding upstream 24163 17704494 ~ 17728160 (+)
AMCG00018669 ksr2 coding upstream 75154 17638267 ~ 17677169 (+)
AMCG00018663 NA coding upstream 158627 17585520 ~ 17593696 (+)
AMCG00018665 NA coding downstream 9161 17779697 ~ 17782700 (+)
AMCG00018666 NA coding downstream 16176 17786712 ~ 17789440 (+)
AMCG00018673 NA coding downstream 27417 17797953 ~ 17803948 (+)
AMCG00018668 NA coding downstream 36471 17807007 ~ 17823600 (+)
AMCG00018679 nf2,nf2a,LOC108431713,LOC107726729,LOC107599150 coding downstream 70216 17840752 ~ 17866985 (+)
G117887 NA non-coding upstream 167211 17584751 ~ 17585112 (+)
G117813 NA non-coding upstream 499300 17250869 ~ 17253023 (+)
G117808 znrf3,LOC106584905 non-coding upstream 527714 17224012 ~ 17224609 (+)
G117805 NA non-coding upstream 590600 17161514 ~ 17161723 (+)
G117804 NA non-coding upstream 591283 17160762 ~ 17161040 (+)
G117959 NA non-coding downstream 208475 17979011 ~ 17980939 (+)
G118005 LOC101154678 non-coding downstream 447267 18217803 ~ 18218099 (+)
G118013 NA non-coding downstream 695832 18466368 ~ 18730812 (+)
G118043 LOC104945943 non-coding downstream 903738 18674274 ~ 18676226 (+)
G118285 NA non-coding downstream 1685606 19456142 ~ 19456983 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other upstream 682653 17068212 ~ 17069670 (+)
AMCG00018602 LOC102789415 other upstream 2770618 14954564 ~ 14981705 (+)
G117383 NA other upstream 2964190 14786623 ~ 14788133 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other upstream 2975213 14774115 ~ 14777110 (+)
AMCG00018567 NA other upstream 3340044 14408958 ~ 14412279 (+)
AMCG00018681 NA other downstream 210604 17981140 ~ 17983017 (+)
AMCG00018702 NA other downstream 948670 18719206 ~ 18721343 (+)
AMCG00018712 NA other downstream 1057061 18827597 ~ 18840095 (+)
AMCG00018717 trpv4,LOC106585668 other downstream 1123799 18894335 ~ 18908956 (+)
AMCG00018732 NA other downstream 1452632 19223168 ~ 19234351 (+)

Expression


Co-expression Network