AMCG00018669 (ksr2)


Basic Information

Item Value
gene id AMCG00018669
gene name ksr2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 17638267 ~ 17677169 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018669
gcaaagaaaaagaacaaacccTTGAACCTCAAGATTCACAACAGCGTGGGAAGCTGCGAGAACATCCCCTCCCAGCGATCCCCTCTTCTCTCGGAGCGGTCCCTGCGCTCTTTCTTTGTGGGGTATCCAACTTTCCTGCCCTCCACTCCCCCCGTTCACTCTGAAGCCACTTTCTCTGCAAacACACTCTCAGTGCCTCGATGGTCTCCTCAGATCCCCCGCAGAGATCTGGgaaattcaataaaacacagATTTTCCACCAAATACTGGATGTCCCAGACATGCACTGTATGTGGAAAAGGAATGTTGTTCggtctgaaatgtaaaaactgcAAGTATGTCCTTTGCTTCCTCGAAAGTTGTGCTAAGAGACCGCCAGATTCCAGCAGTAATCCCTCTTCAACAACCTCCTCCACCCCATCATCACCAGCACCCCCTCTTCCTCCCAGTGCCACCCCCCCATCACCACTGCACCCGTCCCCACAGTGCACCCGGCAACAGAAACAGTTCAACTTAACAACTTCTCATTACTTCAAATACAAGCAGCAGTTCATATTTCCAGATGTTGCGCCAGAAGCACCAAGCAGAGCACCCCAAGTTATTCTGCATCCTGTCAACTCTGATTCCGCAAATGAAGGGAAACCTATACTACAGATTGAAGTCGAACCTACATCAGAGAATGAGGACGGGAACGATGAGGCGGAGGACTCTGAAGACGAATTCGAGGAAATgaacctctctctcctctcggCCCGCAACTTCCCCCGCAAAGCCAGTCAAACCAGCATCTTCCTGCAGGAGTGGGACATCCCCTTCGAGCAGCTGGAGATCGGGGAGCTCATCGGGAAGGGGCGCTTCGGCCAGGTTTTCCACGGGCGCTGGCACGGCGAGGTCGCCATCCGCCTCATAGACATCGAGAGGGACAACGAGGACCAGCTGAAGGCCTTCAAGAGGGAGGTCATGGCCTACCGCAACACCAGACACGAGAATGTTGTGCTGTTTATGGGGGCCTGCATGAGCCCTCCTCATTTAGCCATCATTACCAGCTTATGTAAAGGAAGAACCCTTTACTCTGTTGTGAGAGATGCCAAAGTTGTCCTTGATGTCAACAAAACCAGACAGATTGCACAGGAAATGGTAAAGGGAATTCTTCACAAAGATATGAAGTCCAAGAATGTATTTTACGATAATGGTAAAATTGTCATCACTGATTTTGGTCTCTTCACCATCTCCGGAGTATTACAGGCGGGCAGCAGGAGGGAGGACAAGCTTCGAATCCCCAATGGATGGCTGTGTCATCTGGCTCCTGAAATAATTCGACAGCTTTCCCCAGACACAGAAGAGGACAAACTTCCATTCTCAAAACAGTCTGATGTGTTTGCATTTGGGACTATATGGTATGAATTACATGCACGTGAGTGGCCTTTCAAGAATCAACCAGCAGAAGCAATTATATGGCAAGTTGGAAGTGGAATGAAGCCAAATCTCACACAGATAGGCATGGGCAAAGAGATATCTGACATCCTGCTTTTCTGCTGGGCATTCGAGCAGGAGGAGAGACCCACCTTCTCCAAACTTGTAGATATGCTGGAAAAATTGCCAAAACGGAACCGTCGCCTTTCCCACCCAGGACACTTCTGGAAGTCAGCTGAGTATGTCAAatgagttaggaacaaaacctTTGAAAGCACTGACAAGCAACCAATGGCTAAACTACCTGAGTTTTGCATTACCCTTGGATTATGTACATAATGTGCATAGTTAATCAATGGTCCCCAAAGTTAGAATCTATTAGCCCAGTGCTGCGGACAAACGTTTTTGCTACACCCGGGACATTGAATCTCTTTATTTGACAACTTCATcaacccctcccccaccccttccctttttgtttggatttggttttattttgatgaCCGTTCTCTAGTTTCATTGCCGTGTTATGAGCCACTACATATGTGTTTACTGCATTTTacttaaacaaatgcattttttaacactttgTTTTTACAAGAATGTAGTTTTAGTTTGTCaacagatcaatgtaattaTGTTATGAAtcctgcaaatgtatttatttttgccatctGTCCCGTTTGTCCCCACTGATCTTGtcactgttttatttctgtggtCATATATGtggatgtatgtatgtgttccGTACATTTCAATCACAAAGCTTTACACCTGCAGGGAATTATCAGTAACATACTacataaacacatgcatttgCCTGCACATGTGAGGGTAGGGAGTTTTATAATTGAACAATTCAAATTTGACATGCAAATCTGTAACTAaggcaacaaaaaaaatacctgTGAACTTGATTCTGAAAATAACTaactatgaaaaacaaacaaactgaaatcttTCTGACACACAGTTGGAAAAGCATTGTAGGTACTAGAAGATACTGAATGTGATAAGAATTTGACacttgaaatgtaatataataactgtgacaaatgaatacattagtTTGATTAAAATGCTGATATAGAGCCTGTGTTCTGCACTTTTAGTCAAaaagggattttgttttatataacaaaGGTCAAatttttatatcaaattaatcttatgtatgtgaatatattttaaataaaaacaaacaaaaataaatctacaaatCATATCAGAATGGCGATCATTCGAACCTTGGGCCTTACATTTGAATAGAATCAGAAAGGAACATATTTGAAATCCAAAACATGTCAATGTATATCTCTGACTAAGCATGGGCAGACTGTTGCATGCTTAAGAAATATTGTGTCACAATTTAGTACTTTAATGTCCAGTCTGCCTATTTTTCAGCctctaatataataataatatttcattcaAGTCTGTTAGGCctccaaatatataaaaatatgaatgatattgattttaaaaacaagaggCTGCCTGAAACACCCAGAGTCATACTTATTAAacagcttttatatttttaaagtctcTGGAAATTTGTAAATGCAGTGCCATGTCCAGTCGATGTAGACAATCCACTGATATATGTCTGTTTCtaccatatataaatatataaatacagtatctATACATACATCACAAgtgcataataaatatattgtgctGCTGCATAGGGTATTTCTGTCTATACTGGAAAACAACTCATAAATCACTCAAATTCAGTGgatcatatatatttgtacgtAATGTCCACTCTGATGTTTACAGTTTTAAGTGCATGAGACCCTTTTTCCTTAAAGTTTAAAGGATCGATCAATGTaattccaaaaaagaaaagaaaaaagagaaacgttgcattaagtattttaagaatatgtgaaaacaaagtTTCATGTTACTGTACTTGAGTATTTTCTGATGACTTATCCACAACTGTAGTTGTTGAGCCATCAAACAATTTGTtgctttgtaaaaacaaaaatgtgtaaaataattccTGTAATGCTATATTTGTACTATAACATATTATAAAGCTTCACAGACTGTGTTCGTTCTGGACAAGGGTACCACATACTTTGTGGAAAAGCTGGCAACGTAACAATTTGAGTTGAGCATCGACATTAGTGCCAAGTGTTTTAAAACAGGTAGTAGCTTTGTTTGACATTCCATGTCAATTTATGTGGGTTTGGTGTTAAGGGTCGCTGTTTTTTCTGGCTGTTGGGATTGTGTTGTCTTCTTGTCTTATTTCCGTTCAGACCTGTTTTGGGATTGCTAcacttttatttgttgttattgttgttgttgttgttgttgttgttgttgttgttgttttcttttgtaattcaATCATGTATTTTAGGGCCTAGAGCTAATAGCCTGTAATTGCAGCTGCCTTATGGTCTGTGGCTTAGTGACAGAGATGGATTGATCATGAGCTATTTATTTGCACTCATCTTCTACCTGTGTATGAC

Function

symbol description
ksr2 Predicted to enable protein kinase activity. Predicted to be involved in Ras protein signal transduction and calcium-mediated signaling. Predicted to act upstream of or within intracellular signal transduction and protein phosphorylation. Predicted to be active in cytoplasm. Orthologous to human KSR2 (kinase suppressor of ras 2).

NR:

description
PREDICTED: kinase suppressor of Ras 2 isoform X1

GO: NA

KEGG:

id description
K18529 KSR2; kinase suppressor of Ras 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018669 True 3908 mRNA 0.40 13 17638267 17677169

Neighbor

gene id symbol gene type direction distance location
AMCG00018663 NA coding upstream 44571 17585520 ~ 17593696 (+)
AMCG00018662 NA coding upstream 53703 17577935 ~ 17584564 (+)
AMCG00018659 taok3 coding upstream 63836 17546960 ~ 17574431 (+)
AMCG00018655 NA coding upstream 341280 17290702 ~ 17296987 (+)
AMCG00018654 NA coding upstream 381410 17253155 ~ 17256857 (+)
AMCG00018670 nos1,LOC102776628 coding downstream 27325 17704494 ~ 17728160 (+)
AMCG00018671 NA coding downstream 55410 17732579 ~ 17740121 (+)
AMCG00018672 nipsnap1,LOC106579802 coding downstream 65783 17742952 ~ 17749119 (+)
AMCG00018667 gatsl3,LOC100696475 coding downstream 75154 17752323 ~ 17770536 (+)
AMCG00018665 NA coding downstream 102528 17779697 ~ 17782700 (+)
G117887 NA non-coding upstream 53155 17584751 ~ 17585112 (+)
G117813 NA non-coding upstream 385244 17250869 ~ 17253023 (+)
G117808 znrf3,LOC106584905 non-coding upstream 413658 17224012 ~ 17224609 (+)
G117805 NA non-coding upstream 476544 17161514 ~ 17161723 (+)
G117804 NA non-coding upstream 477227 17160762 ~ 17161040 (+)
G117959 NA non-coding downstream 301842 17979011 ~ 17980939 (+)
G118005 LOC101154678 non-coding downstream 540634 18217803 ~ 18218099 (+)
G118013 NA non-coding downstream 789199 18466368 ~ 18730812 (+)
G118043 LOC104945943 non-coding downstream 997105 18674274 ~ 18676226 (+)
G118285 NA non-coding downstream 1778973 19456142 ~ 19456983 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other upstream 568597 17068212 ~ 17069670 (+)
AMCG00018602 LOC102789415 other upstream 2656562 14954564 ~ 14981705 (+)
G117383 NA other upstream 2850134 14786623 ~ 14788133 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other upstream 2861157 14774115 ~ 14777110 (+)
AMCG00018567 NA other upstream 3225988 14408958 ~ 14412279 (+)
AMCG00018681 NA other downstream 303971 17981140 ~ 17983017 (+)
AMCG00018702 NA other downstream 1042037 18719206 ~ 18721343 (+)
AMCG00018712 NA other downstream 1150428 18827597 ~ 18840095 (+)
AMCG00018717 trpv4,LOC106585668 other downstream 1217166 18894335 ~ 18908956 (+)
AMCG00018732 NA other downstream 1545999 19223168 ~ 19234351 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location