AMCG00018671


Basic Information

Item Value
gene id AMCG00018671
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 17732579 ~ 17740121 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018671
GGATGTCTCAGCTGCAGCTAGTGCAGTGATTTGTTTACCAGCCCTTAGCTTTTAGGGTTTACTCTTTGCTTACGTGATATTCTTAACTTTGTGTTCACAAGCTAATGGAACACAGTTTTGATGGTATCTAAGTAGTATCCTGTttgagtgtctttgtgtgtgtgtgtgtttgtaggagGTTGGAAGTATCTATAACTTTTTTGGGACCATGGTTGTTGGTAAAAAGCTGGTGAAAGAGTCCGTGTTGCCCTCAGTTCTAGAGGATAATGATGCTGAACTGGAAAGTGAATCTAATGGAGAGAGTGACAATCTGAGAGGAATAGGAAGCAGACCGACCAGCATACCACTTAAAGCCTTCAGCCGAGGTAGTATTGACAACAAGACTGTCCCAAGATCAGGGAGAAGCCAGTCTCCAGCACAGAGCAGATCTCCGGGTTTGGGAGTGGATGAACAGGAAGATGAGCCCACAGAACAAGTTGACCTCCTGCAGAGTCAGACAAGCACCACCTTGGACAAGGAAGCAGATAATGCGGAGGAAGAATGGGACACAGATTTAGAATTAGAAGATATGAGGGAAACTTATGACCCTACTGGACAGACACGGTATAAGGCTGCCTGCAAGATGTTTGGCGTGGTACCAGTTTCATATTTCCTGCGACATTTGCATGACACTGAGCTAATCATGATGCATCACGGGCTCGGACCCCAGGGTGCCAAAGCTCTTGCTGTTCCCTTGGTAACCAATACATCAATCCTCAAGATTAATCTGAGGGATAATTGGATTGAGGAGCTAGGTGGAGCTGCGATAGCAGAGATGCTGACAGAAAACTGCTATATCACAGATATTGATTTGTCAGAGAACAAGCTGGGAGGAAAAGGAGCCCAAGCCATTGGCAACATGCTCCTGGAGAACACCACTTTGGTCAGTATCAACCTCTCTGGGAACGGTTTTGATGACCATGCGGCAAAGCACTTGGCTGACGCTTTGGTGAGCAACCAGAAAGTGGAAGTCTTGGATCTGAGTCACAATCGGATGGGAGACGGAGCAGGAGAGATGTTAGGCAACGCGATTGCTGAAAACACAGGAATGAAGACTTTTAACCTGAGCTGGAACTCTTTGCGGGGAAGAGGATCGATCACACTGGCAAGAGGTTTAGGGGCCAACATTTTCCTTCGTGTGATAGACTTGTCTTACAATGGATTTGGGAAGGATGGAGCTGTGGCTCTTGGGGAAGCTCTTAAAGTGAACAACGTGCTTGAGGAACTGAACATTGGtaacTGCCGAATACCCCCTGAAGGAGCGGTCCGGTTTGCCATGGgcctcaaagaaaacaaaacactgaaaacactcATTATGTCGCGAAACCCGATGCAGAGCGCTGGCTGTTATGGAATACTGAAATCAATGCAAGGAAATCCAGAATCTGCCATTGAGTCCCTGGACTTCTCTGACATCACTGTAAACAAGGATTTTGATGACCTTTACTCCGCAATCAAAGAAATGTTTCCCAATCTTCAGGTGAAACACGGGGGAAATGCAGACATGTTCAGGAAAACAAAGGCCAAAACAGACCCCTTGAGCAAACTGAAAGAGCACATGAACAAGAGCAGCTTGAAGTTGGAGGATTTCTTTGAGACTGTGGATGAGGATAAAAGTGCTCTTGTCACCCGGGCCGAGTTTCAACAGGGACTCATGGCTATGGGGCTCCCTTTATCCCAGGATGAACTGCAGCTGCTGATGGACGACTTTGATAAGGACAATAACGGCGAGATTGATTTCAGaGAATTTAATACATTACTGATGAAGGTATAATGCAGTGTATCTATCTGGCATTGGGGACATCTTTGAAGAACGCTTGGACATTTAGAGTGGAAACTACAAACTCCTGGATACATGCTTTCCTTACCTGGCTCCCATTCAGTCTCTTTCCACACTCAGTGTTTCGCCGATATGACAAAGACACACTGGCAGCTGGCAAGAATAGACACGAGGGTGGTGCAGAAAATATTCTGCAGCTGTGATAAACTTATTTTGCTAtgttaatttttgttttctatgatGAAATGCCAGCATTCTTCCATgtttatacaaaatgaatgaaagtaGGTTCTATAAAAGTTGATCAAAATATAGAGTTTATTGTAATCTGAATATTGAactgcacattttttaaacacctCTGTGTATTATGGGCAATTTTTAGATTGGAATTCCTTCTGCTCCTATTTAGATTCGGACATGAaagttttaaaagcaaaactagaatataataatttctGCATGTGACATTActttttgcatgatatattactggatatgtattatttttatggtcATATGCAGGTCAATGCCAATCAAagtaataatagtataatttagGATATAATATGCATCAGTAATAGTATATAAAAGTCAGTTGGTTAGTATCTtagtataatagcaggtatGTTCATGATGGTATGTtaatataagtattattattattattattattattatcagtcaAACAGTGGCAATAGCCCC

Function

GO:

id name namespace
GO:0017001 antibiotic catabolic process biological_process
GO:0019541 propionate metabolic process biological_process
GO:0019543 propionate catabolic process biological_process
GO:0019626 short-chain fatty acid catabolic process biological_process
GO:0046459 short-chain fatty acid metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018671 True 2524 mRNA 0.42 13 17732579 17740121

Neighbor

gene id symbol gene type direction distance location
AMCG00018670 nos1,LOC102776628 coding upstream 4419 17704494 ~ 17728160 (+)
AMCG00018669 ksr2 coding upstream 55410 17638267 ~ 17677169 (+)
AMCG00018663 NA coding upstream 138883 17585520 ~ 17593696 (+)
AMCG00018662 NA coding upstream 148015 17577935 ~ 17584564 (+)
AMCG00018659 taok3 coding upstream 158148 17546960 ~ 17574431 (+)
AMCG00018672 nipsnap1,LOC106579802 coding downstream 2831 17742952 ~ 17749119 (+)
AMCG00018667 gatsl3,LOC100696475 coding downstream 12202 17752323 ~ 17770536 (+)
AMCG00018665 NA coding downstream 39576 17779697 ~ 17782700 (+)
AMCG00018666 NA coding downstream 46591 17786712 ~ 17789440 (+)
AMCG00018673 NA coding downstream 57832 17797953 ~ 17803948 (+)
G117887 NA non-coding upstream 147467 17584751 ~ 17585112 (+)
G117813 NA non-coding upstream 479556 17250869 ~ 17253023 (+)
G117808 znrf3,LOC106584905 non-coding upstream 507970 17224012 ~ 17224609 (+)
G117805 NA non-coding upstream 570856 17161514 ~ 17161723 (+)
G117804 NA non-coding upstream 571539 17160762 ~ 17161040 (+)
G117959 NA non-coding downstream 238890 17979011 ~ 17980939 (+)
G118005 LOC101154678 non-coding downstream 477682 18217803 ~ 18218099 (+)
G118013 NA non-coding downstream 726247 18466368 ~ 18730812 (+)
G118043 LOC104945943 non-coding downstream 934153 18674274 ~ 18676226 (+)
G118285 NA non-coding downstream 1716021 19456142 ~ 19456983 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other upstream 662909 17068212 ~ 17069670 (+)
AMCG00018602 LOC102789415 other upstream 2750874 14954564 ~ 14981705 (+)
G117383 NA other upstream 2944446 14786623 ~ 14788133 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other upstream 2955469 14774115 ~ 14777110 (+)
AMCG00018567 NA other upstream 3320300 14408958 ~ 14412279 (+)
AMCG00018681 NA other downstream 241019 17981140 ~ 17983017 (+)
AMCG00018702 NA other downstream 979085 18719206 ~ 18721343 (+)
AMCG00018712 NA other downstream 1087476 18827597 ~ 18840095 (+)
AMCG00018717 trpv4,LOC106585668 other downstream 1154214 18894335 ~ 18908956 (+)
AMCG00018732 NA other downstream 1483047 19223168 ~ 19234351 (+)

Expression


Co-expression Network