AMCG00018673


Basic Information

Item Value
gene id AMCG00018673
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 17797953 ~ 17803948 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018673
ATGCAACTTTTTGGACGCAATTGTGAAGAGTTGGAGGCAATGCAGAGGAGACACAGTAGCATCACTGATGGGCTACCACCTGAAAGGACGAGGAGTCAGACTGTTGGCTCAGAGAACAGCCTGGATGAAGGGGGGGTTTTTGAATGCCTGAAACCAGAAGCCCCCTCCCCGCAGCAGCTTTTCTCTGGCCTGGTGGGGGTCCCCTCAGGAAATGTGACGGCCGCCCCCTTCCAGGCGGCAGGCCTTGTCCTGGGGTCCCCACCGGAAGTTTTCATTCAGATGACTTCGTCTGCCAGGGAGGAAGGGCCTCTTCGCCCGGAGAGCACGCCGTACCTGCCCCGCCAACcccagcaccaccaccaccaccaccactaccaccaGCCGCCTTCGCACCGCTCCTCCCTGCTGCATGCCGCTGCCACGGATCGCCACGGGAATGGGGAGGACAGCTCGGAGGACCCCTCCACTCCTGCCCCTGCCCTGTCCGAGCTCCGCGCAGTCATATCCTGGCTTCAGAAAGGCTTCCCCTTCATCCTCATTCTGCTGGCTAAAGTCTGCTTCCAGCACAAACTGGGAATTGCTGTGTGTATTGGGATGGCAAGTACTTTTGCCTGTGCAAATTCGACTGTGATACACCAAGTATCCCTACGGGAGAAGAGATCTGTGTTCGTTACCTTCTGGATTCTGACTTTCCTTGCTGGGAACACTGTGTATCTCTACTACTCGTTTAGCGCGGAGGAGTTATACAACAGCTTGATATTTATGAAGCCCAACCTTGACAGCTTTGATTTCTTCGATTTGATCTGGGTGGTTGGCGTCACCGATTTTGTCCTCAAGTTCTTTACGATTGGCCTGAAGTGCTTCATTCTTGTCCTGCCCAGAATTTTCCTTGCTTTCAAATCCAGGGGTAAATTCTACCTGGTGATTGAGGAGCTGAGCCAGCTGTTTCGAGCCCTGGTCCCCATCCAGCTGTGGTACAAATACATCATCGGCGAAGACCCTTCCAACAGTTATCTCCTGGGGGGAGTGCTTATTATACTCTACAGTTTGTGCAAGTCCTTTGATATTTGTGGGCGAATCGGAGCAATAAGGAAAGCTATCAAGATGCTGTGCAGTTCCCAGAGTTACGGGGTGCGGGCCAGCAGCCAGCAGTGCAGCGAGGCTGGGGACGTCTGTGCCATTTGCCAGGCGGAGTTCAGGGAGCCGGTGGCCCTGATGTGTCAGCATGTGTTCTGCGAGGAGTGCGTGTGCCTGTGGTTTGAGCGGGAGCGGACCTGCCCCCTGTGCCGCTCGGCCATCATCGAGACCCTGCGCTGCTGGAGGGACGGCACCACCTCGGCTCACTTCCAGGTCTACTAATCCTGCAGCAGAGGAGGGCTGGCAATCAAGTCTAGGGCAGACTCGGCCATTAAAACATGATCTTCCTTCCCCCTTATGCTGGCTTTTTTTAAAGACAGTGTAGTGCATATATCTTAACCCTTTAACCGCCATCCATTGATGCCGGCAGAACGATTCCTTTTCCAATTCCAGTTCCAGATTCTTTTCGAATAGATGTGTTTGTTCCCCCTCTATACCAAGAAGATGAAGGGTTAACATCCATACATAGATTCAGGGCCATCTTTGTTCATGTTCcctccattttaaaatattttcttgcagTATTAATGCGTGTGGTTGGCAGATGACCTTGCATTTTAAACACGCTGCAGTGTGGAAAGATTGTGATCAGTTTCTAAGAACACTGTCTctgtgtaaaattaatattgagGCCCCTCACACACATGTTGCTGGCCTTTTTTGAGGAGCGAAAAGGACATTTCATGTTAAGTGTTCAAAAAGGTTATAACACAAAAAGCAACTTAATTTTGCTGTAGGGATTTGAGTTCGGAATTTTAATGTTATGGTATAGCAAGCGCTCTAAGATTTAAACATCAGATAGCGCCCTCTAGTGTAAGTCTGTCTGAACTGCATATATACTGATTTCCCACGaactaattaataatttagataTGCAATATGGTTTtattagatttagttttttgtcaacttgcttttgttgtttttgttagtgCTGATTCTGTACTGAAAATAAAGCCCTAAATATGACCAGAA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018673 True 2112 mRNA 0.49 10 17797953 17803948

Neighbor

gene id symbol gene type direction distance location
AMCG00018666 NA coding upstream 8513 17786712 ~ 17789440 (+)
AMCG00018665 NA coding upstream 15253 17779697 ~ 17782700 (+)
AMCG00018667 gatsl3,LOC100696475 coding upstream 27417 17752323 ~ 17770536 (+)
AMCG00018672 nipsnap1,LOC106579802 coding upstream 48834 17742952 ~ 17749119 (+)
AMCG00018671 NA coding upstream 57832 17732579 ~ 17740121 (+)
AMCG00018668 NA coding downstream 3059 17807007 ~ 17823600 (+)
AMCG00018679 nf2,nf2a,LOC108431713,LOC107726729,LOC107599150 coding downstream 36804 17840752 ~ 17866985 (+)
AMCG00018678 LOC104923679,LOC100329495,LOC107386260,LOC102231850,LOC107599169 coding downstream 129797 17933745 ~ 17959525 (+)
AMCG00018685 prodha,LOC100695866,LOC108439536,LOC107373658,LOC106514456 coding downstream 219079 18023027 ~ 18035628 (+)
AMCG00018686 NA coding downstream 334097 18138045 ~ 18139541 (+)
G117887 NA non-coding upstream 212841 17584751 ~ 17585112 (+)
G117813 NA non-coding upstream 544930 17250869 ~ 17253023 (+)
G117808 znrf3,LOC106584905 non-coding upstream 573344 17224012 ~ 17224609 (+)
G117805 NA non-coding upstream 636230 17161514 ~ 17161723 (+)
G117804 NA non-coding upstream 636913 17160762 ~ 17161040 (+)
G117959 NA non-coding downstream 175063 17979011 ~ 17980939 (+)
G118005 LOC101154678 non-coding downstream 413855 18217803 ~ 18218099 (+)
G118013 NA non-coding downstream 662420 18466368 ~ 18730812 (+)
G118043 LOC104945943 non-coding downstream 870326 18674274 ~ 18676226 (+)
G118285 NA non-coding downstream 1652194 19456142 ~ 19456983 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other upstream 728283 17068212 ~ 17069670 (+)
AMCG00018602 LOC102789415 other upstream 2816248 14954564 ~ 14981705 (+)
G117383 NA other upstream 3009820 14786623 ~ 14788133 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other upstream 3020843 14774115 ~ 14777110 (+)
AMCG00018567 NA other upstream 3385674 14408958 ~ 14412279 (+)
AMCG00018681 NA other downstream 177192 17981140 ~ 17983017 (+)
AMCG00018702 NA other downstream 915258 18719206 ~ 18721343 (+)
AMCG00018712 NA other downstream 1023649 18827597 ~ 18840095 (+)
AMCG00018717 trpv4,LOC106585668 other downstream 1090387 18894335 ~ 18908956 (+)
AMCG00018732 NA other downstream 1419220 19223168 ~ 19234351 (+)

Expression


Co-expression Network