AMCG00018686


Basic Information

Item Value
gene id AMCG00018686
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 18138045 ~ 18139541 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018686
ATGGTAGGCAGGATTGTTGGTGTGGTTTTAGCACTGCGGTTCAACTCTGATCTAgtcttctctttcctttcttttccaggAAGCAGACTCTTATTCTTGGTGCTATGGCTGAACTCCATACCCCAGGTTGAGTGCTGTCCaggggtctgtgtgtgttacagtgagCCCAGGACCACGGTGGCATGCCAACAGCAGGGACTGTCCTCAATCCCAACAGAGATACCCATTCGCAGCCAACGGATATTCCTCCAGAATAACAAGTTGACGGTGGTGAAGTCGACCAGCTTCAGCTCTTGCCACAACCTGACTGTGCTTTGGCTCTACTCCAACAACATCAGCCACATTGAGGCTGGCGCATTTTACGGGCTGGAGAGGCTAGAGCAGCTGGACATTGGAGACAACAGCAACATGAGGATTATCAGCCCCACTGCCTTCCGAGGCCTGTCAAGACTGCACACCTTGCACTTGCATAGGTGCGGCTTGTCTGATTTGCCCGTTGGGGTTTTCCGAGGACTGTTTTCCCTACAATACCTGTATCTCCAGGACAACAACTTGTTAACTCTGCATGATGACACTTTCCTAGACTTGGCCAACCTGACCTATCTCTTTCTCCACAGCAACAAAATCAAAACGGTGTCGGAGAACATGTTGCGTGGTATGATCAATCTGGACCGCCTACTGTTACATCAGAACCGGGTGTCCTTTGTGCACCGGAGGGCTTTCCACGACTTGGGGAAGTTGACAACCTTTTACTTGTTCAATAACAATTTGACTGTGCTCACGGGGGAAACTATGGACCCCTTGGTGTCACTACAGTACCTCCGTCTCAACGGGAACCAATGGATCTGTGACTGCAGGGCCCGGTCTTTATGGGATTGGTTTAAGCGATTTAAAGGCTCAAGCTCTGAGCTGGAGTGCCATGTTCCATCGAATCTGGCTGGCAAAGATCTCAAGAGGTTGAAGGCCAGTGACCTTGAAGGCTGCACAGATTATTCGCAGCAAGTCCGAACCAGCATCTTTAGCACCAAGACCCGATCGGGAAAGCTGCCCACGACCGAGACACCGTTAACAGATGGCACTCCTAGGTGCTGCCAGCAAGAGAGTGACAAATCCTCCATTATATCCAGCAAGGGCCTCCCAGATCCCTCTTCTTACAACAGTCGACAGATCACAAACAACCCACTCAAGGACAAAGAAAACATCTCCAAGACCAAGTTCCTGGAAGTAGACCCCACCAAGAATGGCACTCATAacatacagagacagaaagacgaCCCTGCTAGAACCTTCTCTGATACTCTGGACGCGCCTTTGGGGAAATTGAAACCAGACTTCATTGACAATATGGAACCTTCAACAGCGCCCtcaaagaagagaaagaagtGCTCAAAAAAGCCCAAACCAGATGCCCAGTGTCTCAAAGGCAATGGTTCCACATCTCGGGCACTGAACCTTCTCTTCCTGCCCGCTATCTGGTTCTCTTTAACGATCTGCTAG

Function

GO:

id name namespace
GO:0048936 peripheral nervous system neuron axonogenesis biological_process
GO:0007411 axon guidance biological_process

KEGG:

id description
K16659 RTN4R, NGR; reticulon-4 receptor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018686 True 1497 mRNA 0.50 1 18138045 18139541

Neighbor

gene id symbol gene type direction distance location
AMCG00018685 prodha,LOC100695866,LOC108439536,LOC107373658,LOC106514456 coding upstream 102417 18023027 ~ 18035628 (+)
AMCG00018678 LOC104923679,LOC100329495,LOC107386260,LOC102231850,LOC107599169 coding upstream 178520 17933745 ~ 17959525 (+)
AMCG00018679 nf2,nf2a,LOC108431713,LOC107726729,LOC107599150 coding upstream 271060 17840752 ~ 17866985 (+)
AMCG00018668 NA coding upstream 314445 17807007 ~ 17823600 (+)
AMCG00018673 NA coding upstream 334097 17797953 ~ 17803948 (+)
AMCG00018698 NA coding downstream 206416 18345957 ~ 18437784 (+)
AMCG00018697 NA coding downstream 388202 18527743 ~ 18528121 (+)
AMCG00018693 NA coding downstream 422992 18562533 ~ 18571339 (+)
AMCG00018691 LOC103397299,LOC106580116,LOC107704964 coding downstream 451425 18590966 ~ 18605862 (+)
AMCG00018692 lztr1,LOC107755835,LOC107704547,LOC107668721 coding downstream 506978 18646519 ~ 18659398 (+)
G117959 NA non-coding upstream 157106 17979011 ~ 17980939 (+)
G117887 NA non-coding upstream 552933 17584751 ~ 17585112 (+)
G117813 NA non-coding upstream 885022 17250869 ~ 17253023 (+)
G117808 znrf3,LOC106584905 non-coding upstream 913436 17224012 ~ 17224609 (+)
G117805 NA non-coding upstream 976322 17161514 ~ 17161723 (+)
G118005 LOC101154678 non-coding downstream 78262 18217803 ~ 18218099 (+)
G118013 NA non-coding downstream 326827 18466368 ~ 18730812 (+)
G118043 LOC104945943 non-coding downstream 534733 18674274 ~ 18676226 (+)
G118285 NA non-coding downstream 1316601 19456142 ~ 19456983 (+)
G118290 wscd2,LOC107597274,LOC107743343,LOC107696066 non-coding downstream 1328282 19467823 ~ 19473460 (+)
AMCG00018681 NA other upstream 155028 17981140 ~ 17983017 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other upstream 1068375 17068212 ~ 17069670 (+)
AMCG00018602 LOC102789415 other upstream 3156340 14954564 ~ 14981705 (+)
G117383 NA other upstream 3349912 14786623 ~ 14788133 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other upstream 3360935 14774115 ~ 14777110 (+)
AMCG00018702 NA other downstream 579665 18719206 ~ 18721343 (+)
AMCG00018712 NA other downstream 688056 18827597 ~ 18840095 (+)
AMCG00018717 trpv4,LOC106585668 other downstream 754794 18894335 ~ 18908956 (+)
AMCG00018732 NA other downstream 1083627 19223168 ~ 19234351 (+)
AMCG00018740 NA other downstream 1233931 19373472 ~ 19482092 (+)

Expression


Co-expression Network