AMCG00018691 (LOC103397299,LOC106580116,LOC107704964)


Basic Information

Item Value
gene id AMCG00018691
gene name LOC103397299,LOC106580116,LOC107704964
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 18590966 ~ 18605862 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018691
CTTGGCTTATGGTTCCCACTACAGCCATATAGCCATCATGTCTGGCGGCAGGGCGAAACCCAGGTCGGTGGCAAACCCCCTGAATCAGGCTGTTTCCTCTCCGGGGGAGCACATCTTGCGGGAATGCCACAGCCTCTATACCGACAGCGACAACGgTCTAATAAAGATCGCAAACACTCTGGGTGTCAAGCTGCTTCCTCCGCGCAAGAAAATCATTGTGATGATAATGGGAAACCACTCAGCTGGGAAGAGCTCCTTCATTAACTGGTATGTGGAGGAGCACATTCAGAAGACAGGAGTGGCAATTGAAACGCAAGGTTTCACCTTTGTCACGAGTGGTCGGAAGAGAGAGTCGCTTACGGGCAACGCCACGCTTCACCTGTATCCACATTTTCGACCTCTTCTGGAGTTTGCAGACTACCTCTCTGCTGAGATCTCCACTTCCAAGCAGAAGAAGTTCAGTTTAGTGACATTTGTGGACACTCCCGGGTTGGTGGATGGTGACATGACGTACCCCTTTGATGTGAACAATGCTATCACATGGCTTGGGGAGCAAGCCGACCtcatctttgttttctttgaccCCATGGGCCAGGCTCTGTGCAAGCGAACGCTGAACATTGTGGAGAAGCTCAGCGAGAAGTGTGGCGACAAGCTGCTTTTCTACCTCAGCAAGGCCGACGAGGCAGGCCGGGAGACCGACCGGCAGAGAGTAATGATGCAGATTGTTCAGGAGCTTTGTCGAAGACCAGGTCTGAACAAATGTGGCTTTGAGATGCCCACAATTTACATACCCAACCCACAGAAGCCCAGTCGTTGTGTCAATCAGATTGACACAGTCTGCCAAACAATTGAGAAGACCATCAACCAGGCGGTACAGAAGACTCTGGACCAGCTGGAGAAGGACTGTGACCTGATCTCCAACACAATCCGTAACAAACTAGCACAGGACAGGGAGGACATGGGTTCCAATAAAAGGGCCCGTCTTCACTCTTTCCTGTTCGGGGCTCTTGGGATCCTGCTCCCCTTACTGTTCATCCTCAGCTTTGTAGTCAGCACTTTAACTAGAGAGGTGGTGAAGGCCTTTGCTGGAGAAAGCATAACAACAATTCTCTACCTGAGTACGGGATGGTTATTGAAATTGTGGGACTGGATGCCAGAAGACAgccagattttatttataataattgtagGAGCCTTCTGTTACCTGTTTATATACTTGGCAAAATACTTTGCAAGCCGTACAAACCGAACCctcacaaagagagagaagaagtgCCTGGCAGACTACAGTGATTATATTCAGGAGGTTGTCAAACCGAAGAAGgGGAAGCTATATGAAGAGTATCTGCGCCAGTGTGCCACAGAATATGACCTGAGCTAAAGCAGCGAGCCATTCCCAAGATGTGGACAGCACCCCCCTGAGTGAAAGCGATCAAAATGCAGAGGAATTCTGAGTAGACAATGTGCaagtaataattttaaatataccgTAGTTTGGGATGAAATCGCAGCCTTACATAGAATTGTATTTAAGTGAGGCAGTGGAGGTTCTTCTAGTACAGAGAGACTCTGGATAAATCAGGAAGACAACTCTCAAGGCTGCAGTTGGACGAACAACACGATCGATTGAACCAGAGGTTTGTCTTGGATTTTCTCAAACACAGCACTTGGGTATAGAGCTTTTTAATAGACATTTATACTGCCATTTTTATATTGACTTTTGGTACTTATGTGTTTGTTCTATAGTAAGACTTAGAAGGAAACATGAACGGCCTCTTGAATAACTAAGTGCCTTCTGCATGGaagtcaaatgtaaaaaattgtGGTGCTCAGCAGGGTGACTTGGCTTGTTGTGGATGCATACACCCTGTGGGTTTTCCAACTGATGGGTAGTATCTGGTTAATATAGCAATAGATTAGAGACCGTATAATgtactaatattattttcaggaaataaaatgtgtacatcATTTAAATAAGGTAAACCAATAGATTGCAAACCCATAAATGCCTATTAGAATGGTTAAACATCCTAAACTCAGGCTGTGCCCATTCTTGTGTACGTCACTTTCCATGAGAGACTTTAGTGTCCCACTTGTCCAATGTCCTAATCCTCCAAACAGTGCACTGCGTAGATAACTAGATTAGCCACTCTGTGTTATAAATCCTTTAATGGCTTTTGATAGATGTTTGTTTCGTTTTTATACTCAGAGTGGCAGAGCACAATAACCAACAATGTGAATCATACAGCTATAAGCCGATTAATaataagtgtgtctgtgtgagtgtgtacagCTTGAAATCATAGGCACACAAATTGTGACTTAAATTATACTATGTAATTAAGAAAGTTTAAGCTTGAAATGCTCCCTTTTATCTACATAGACTTCCATATGTTttggcttgtgtttttgatgaAATCTGTGAATACTTCCGGTatagattaaatcaaagcatAGCCCCTCAGTTTTAAAACCCGAGGTTTCTCTGATGACCCTCCTGTTGGATCAAAAGAGGCCTCTAGCAAACAGAAAGCCACTATCAAGGGcttggtttgtaatttgtgataaGCTCTTTGAAACTTTTATTCAATTTTGAACTTTGTCAATGGCCATTAGGTTTTTCAAAGGGAAATTAAGACTGATTTATACACGTTTTTCTAATGTGAATTTTACTGATTTATCTTCAGGTGCATCTTACTGATTAAATGTGGATTTGATTGCTATACAGATATGCTATTGTTATGTCcgaaaatacatttcttgacaGTAAACCTCAACACTTAAACTTCTTCTGTTTGACTGGATTAGTCCATTTGGTCTACCAACACCAGGACTAAGTGTCTGCcagttttatataaattatataatgagtgattgttgttttttcttatcaTGCTAGAAGAAGCAAAATGCTAATGCTAAAACACAAGATACCTTTAATTAACTAACATAGTGAGATTCTTGGATCAACAAGCTAAAATGTGCTGAATGGCTCCTCTAGTCTTACTTTGTGATGATAGTTTTACGGTTTTCATCACTTTTATGTCTGTAGAGCacttttagtgttttgtatgaAAAGGCACAATATACAATTGAATTACTATTGCTCTTATGAAAGTAATAATTTCTGCCAAGGTCTGTTTACAATAAGTATTGCAACAAAGCAATAATGTTGTATGTCTTCATATATACTTCAAAGGATCGTGATTTTAAATGATGACTGAAAATATTGGCAACTGTCACAGGTCTATAAGAAATTTAGTTGTatgctgtgattggctggttgaATGTGGCTGATTAGtacttcaacaaaacaaaaacaagttgaTTTCATAGATCAAATTCCTCTCGGCTTCATTAAAGTTTTAGCACATCCAACAGGCATTACTGGACACCAAAGTGTATTTATCATGGATGTGAAACATTGGAAATGCcaagttttatgttttaataaataaaatgaataaaagtggTTTATTTCCAAATTCAAGTATTTTTGGTTAAAAGTCATTAATACAGTAGTTTTGGAAAGAAGGACAGATTGCTGTGTAGTGTCAGAGTCATGTGCCAAAATAATATATGTCTTATgtggttttataaatgtttgtataaGAACATGAGATTTGACCAATAAAATGTTCTTCTCAATACAggtgtttttcttaaatgtgttttgtttcattttgtatcCTGAACAAAATTCT

Function

NR:

description
PREDICTED: uncharacterized protein LOC103397299 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018691 True 3710 mRNA 0.40 12 18590966 18605862

Neighbor

gene id symbol gene type direction distance location
AMCG00018693 NA coding upstream 19627 18562533 ~ 18571339 (+)
AMCG00018697 NA coding upstream 62845 18527743 ~ 18528121 (+)
AMCG00018698 NA coding upstream 153182 18345957 ~ 18437784 (+)
AMCG00018686 NA coding upstream 451425 18138045 ~ 18139541 (+)
AMCG00018685 prodha,LOC100695866,LOC108439536,LOC107373658,LOC106514456 coding upstream 555338 18023027 ~ 18035628 (+)
AMCG00018692 lztr1,LOC107755835,LOC107704547,LOC107668721 coding downstream 40657 18646519 ~ 18659398 (+)
AMCG00018701 NA coding downstream 79277 18685139 ~ 18690239 (+)
AMCG00018708 NA coding downstream 123174 18729036 ~ 18729506 (+)
AMCG00018700 srsf9,LOC106568192,LOC107653776 coding downstream 127245 18733107 ~ 18734584 (+)
AMCG00018711 LOC106580268,LOC105014447,LOC106585675,LOC103353553 coding downstream 203514 18809376 ~ 18821287 (+)
G118005 LOC101154678 non-coding upstream 372867 18217803 ~ 18218099 (+)
G117959 NA non-coding upstream 610027 17979011 ~ 17980939 (+)
G117887 NA non-coding upstream 1005854 17584751 ~ 17585112 (+)
G117813 NA non-coding upstream 1337943 17250869 ~ 17253023 (+)
G117808 znrf3,LOC106584905 non-coding upstream 1366357 17224012 ~ 17224609 (+)
G118043 LOC104945943 non-coding downstream 68412 18674274 ~ 18676226 (+)
G118285 NA non-coding downstream 850280 19456142 ~ 19456983 (+)
G118290 wscd2,LOC107597274,LOC107743343,LOC107696066 non-coding downstream 861961 19467823 ~ 19473460 (+)
G118291 NA non-coding downstream 873829 19479691 ~ 19479956 (+)
G118304 NA non-coding downstream 971102 19576964 ~ 19579031 (+)
AMCG00018681 NA other upstream 607949 17981140 ~ 17983017 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other upstream 1521296 17068212 ~ 17069670 (+)
AMCG00018602 LOC102789415 other upstream 3609261 14954564 ~ 14981705 (+)
G117383 NA other upstream 3802833 14786623 ~ 14788133 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other upstream 3813856 14774115 ~ 14777110 (+)
AMCG00018702 NA other downstream 113344 18719206 ~ 18721343 (+)
AMCG00018712 NA other downstream 221735 18827597 ~ 18840095 (+)
AMCG00018717 trpv4,LOC106585668 other downstream 288473 18894335 ~ 18908956 (+)
AMCG00018732 NA other downstream 617306 19223168 ~ 19234351 (+)
AMCG00018740 NA other downstream 767610 19373472 ~ 19482092 (+)

Expression


Co-expression Network