AMCG00018692 (lztr1,LOC107755835,LOC107704547,LOC107668721)


Basic Information

Item Value
gene id AMCG00018692
gene name lztr1,LOC107755835,LOC107704547,LOC107668721
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 18646519 ~ 18659398 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018692
GTGGAAGACGAGTGTAATGGCTGGGGTTTGTTAGACTGCGctgctctttatttttgttgatttggTTGTTTAATCGTTATCCGAATAATGTAGCACTTTCCGCATCATGTGTAtttgatctgtttttatttaaccaaCCCGGTCGTTGAAGCTTTTGACAAcaggatttctttctttttgcaggATTATAATTCAGACTCAGGATGCAGTAACGCTGCTCAGACTCCTCGTATGAACTGAATTGTATCAACAGGGCGACCAGTCTGCCCGCAGAGCACTGGGGCATTTCTTGGGCAAACCGTGTGGTGTTATGCGGCTGTTGAATGTCATGGTTTCCAGGAGCCATGTCTTGTAAATCCAAGGTCGCCCCGAGTGTTGATTTTGACCACAGCTGCTCGGACAGTGTCGAGTACCTGACGCTGAACTTCGGCCCCTTTGAGACCGTCCATCGCTGGAGGAGGTTGCCCCCGTGTGATGAGTTTGTGGGGGCCAGGCGCAGTAAGCACACCGTTGTGGCCTATAAGGATGCTATCTATGTATTTGGAGGAGACAATGGAAAGAACATGCTGAACGACCTGTTGAGGTTTGATGTGAAGGACTGCTCCTGGTGCAGGGCTTTTACAACTGGAACACCGCCTGCACCCCGATACCACCATTCAGCTGTTGTGTACGGAAGCAGCATGTTTGTATTTGGCGGTTACACTGGAGACATCTACTCAAACTCCAACctgaagaataaaaatgatcttTTTGAGTATAAATTTGCGACTGGCCAGTGGACAGAGTGGAAAGTAGAAGGAAGGTTGCCTGTTGCCAGATCTGCACATGGAGCAACAGTCTACAGTGATAAACTCTGGATTTTTGCTGGATATGATGGCAATGCAAGGTTAAGTGACATGTGGACCATCAGCCTTCAGGATCGTGAACAAGCATGCTGGGAGGAGATCGAGCAGAGCGGAGAGATCCCCCCGTCCTGCTGTAACTTCCCTGTGGCCGTGTGCCGGGACAAGATGTTTGTCTTCTCTGGGCAGAGCGGAGCCAAGATCACCAATAACCTCTTCCAGTTTGAATTCAAAGACAAAGTATGGACTCGAATCCCCACTGAGCACCTGTTGCGTggctccccccctcccccccagcgGCGCTACGGGCACACCATGGTGGCTTTCGATCGGCATCTGTACGTGTTCGGGGGCGCCGCAGACAACACCCTGCCCAACGAGCTGCACTGCTACGACGTGGACTCCCAGACGTGGGAGGTCATCCAACCCAGCCCGGACAGTGAGATGCCCAGTGGGAGGCTGTTCCACGCGGCCGCCGTGATTTCTGACgcaatgtacatttttggtGGAACGGTGGACAACAATGTGCGTAGTGGAGAAATGTACAGATTCCAGTTTTCCTGCTACCCAAAATGCACTTTACATGAAGACTATGGGAAACTGTGGGAGAACCGGCAGTTCTGTGACGTGGAGTTCATTCTTGGAGAGAAGGAGGAGCGCGTGAAGGGCCACATTGCGATTGTGACGGCCCGGTGCAGGTGGCTAAGGAAGAAGATTGCTCAAGCACGGGACAGACTGAAACAGAAGTGTAAGCAGGAGAGCGAGGAAGACGAAGCGGTGTGTGGCGCTCAAAAGGAGGCGGCGGGGGGTGGCAGCAGGGCGTCGCGCTCACAGCCCCTTCTGGAGGTGCCCATCCGCGAGGCCGAGGCTCAGCCCTTCGAAGTGCTCATGCAATTCCTGTACACGGACAAAATCAAATACCCACGCAAAGGGCACGTTCAGGACGTCCTCTTGATCATGGATGTGTATAAGCTGGCCCTGAGCTTCAAGCTGTCCCGTCTGGAGCAGCTGTGTGTGCAGTACATCGAGGCCTCTGTTGACCTGCAGAATGTCCTGATCGTGTGTGAGAACGCCAACAAGCTGCAGCTGGACCAGCTCAAGGAGCACTGCCTTAACTTTGTGGTGAAGGAGACTCACTTTAACCAGGTGATCATGACCAAAGAGTTCGAGCGTCTGTCCACCCCTCTGATAGTGGAGATCGTGCGCAGGAAGCAGCAGCCTCCTCCTCGGGTGTACTCAGACCAGCCAGTGGATATAGGAACGTCTCTGGTCCAGGACATGAAGGCGTGTCTGGAGGGAGCTGGACTGGAGTTCTGTGACATCACCCTCCTGTTAGATGGCCACCCTCGCCCAGCACACAAGGCCATTCTCGCTGCCCGGTCCAGTTATTTCGAAGCCATGTTCCGCTCCTTCATGCCAGAGGATGGCCAGGTGAACATCTCCATTGGGGAGATGGTTCCAAGTAAGCAGGCCTTCGAGTCCATGCTGCGCTACATTTACTACGGGGATGTCAACATGCCTCCCGAAGATTCCCTGTATCTGTTTGCTGCTCCATATTACTATGGCTTCTCAAATAACCGGTTACAAGCCTACTGTAAACAGAACCTGGAAATGAATGTTACAGTGGAAAATGTTCTGCAGATCCTCGAGGCTGCCGATAAGACGCAGGCCCTGGACATGAAGAAGCATTGCCTTCACATCATAGTGCATCAGTTCATCAAGGTTTCCAAGCTACCAAACCTGAGGTCCCTCAGCCAGCCGCTACTGCTCGACATCATTGAGTCCTTAGCTACTCACATATCTGATAAGCAGTGTGCCGAAATGGGCTCGGACATTTAGCAGGACTTGCCTGTCCTTAGTCAGTTCCTCAGTGTCACTCCACACCCATTCCACTCTCCCAGAAATCATTCCCCGTGTGCTTTCCGTGTGACTGTATGGACTAGTACACTAGCATGACACAGTACCTCCACCACGTGAATCTGCCTCTTGTTGGACATTTATTACATACAGTATCTGCTTTTTAATATGTACATACTGATTCTTACTTGCATGATAGACTGCAAAACCAAAAAGTTGCCCAGTTTAATTTTTGGAAAAGATTCCAGTGgcagaattattaaaaaaacaaattattacttGAAACACACCTGTCATTTTGAAGTTGGCTAACTGgttaattgaaatataaaatgctttggttAAACAAGAAAACCCTCTGAATGTTCTGTTCTTTAATAATTCCCCAATGTTACAATTAAAAGACAACTTTGAGCCCCATCTTTGATTTGTGttctttgtttatatattactattacatGCAAGCATTATAGTTTTTTGATTGTCATTGAAAGATTTGCATTGAGGctgatttgctttttttttatcatgtaaaatatcccaaatttgaatttaaatataacagGAGAGAAAAGAGTATTCTCATTgcaaaaatattcacatttaattatcttttgcTCAATTCCCATTGGTTAGCTTTTCATGTCAAGTATAGCAGAAGAGTTTGCTATAAGTCAGCATTTTAGTAGGGGGGAAAAGTATATGCGGGATACTTTGTTTATGGAAGTTGGCAGTTTGTACAAGGTGGTGCTATTGTAAGCTTTACTGTAATCACAACTGCTATTTTGTTCAAAACAGTATAGTGCCTTTTGTCACCTGTGTCTCCGATATGATATGTAcaagtattgtgtgtgtgttttatgtaaacGTCATGTCTTGAAgcataataaagtaaaaatgttaaactaatTGTGTATCTGACCTTGTCTGATTTTGTTTCTACATTTAATTGCCTGAACTGTGTGCTGCTTGTTTAGTGGTTATTCAGTTGATAGAtttgttacaaaatgtaactgttaaatgtaatgcttttgttttttggctcATAGTGAACTGTGGAATAGAAGAAAATGTTCATTAATGCATTGATGTTTCCCTAgaaaaatattgtgatataaTGCAATAACTCTCTCagccattatttaaaaaaaaggcatttatatggaaaaatatataatggaaaatgaTTAGACAACTGAGTCCCATCAATTAAATAGTGTTGCCTTGAGTATTAACTTGTTGCTTATGCCTGCCACCTACTGAAGACATTGACGAGTTTATAAACCCTGATGAGAGCAGAGAGGAAATCAGATCCACACAGAGGATTCTTCCATTTATTTAACAAGATGCAAATGATGTACTCAGACCACACAGTACACACTCAATTGcttgaatgaaataaaatttaTACAGGCCTGATCTGGACAACTGGAGGTAGCGTGGAAAGGTTTCATCTGAAACTCCCGACACTTGTCCGTTGGCCGATTGTGTAAGTAAGTTGCCTTCAGCTCTGGGCCTGGAGCGGTTCAATCTTTACAGGGTTTATAGTTCACCCTTAAATCCTCAATTGATAAAGACGTGAAAAAATCTAATTCTGATCATTTAAGCAGGTGGTCTGATATATTCGATAGCTTAGAGAGCATTTGTAATGCACAGCTGAACATACTTCTACTGTCAAGGACCAGAGATTCCTTAATTGAATGGAATTAATTGAATTGTGCTTAATTGATGAGTAACTAGCACGAGTGATTTGATTAACTCGACCTGGGTTTGGAGACCTGATTTAACCACAGCAGCAGCCAGGGCAAAAGGACCAGAACCGATTCACAAGATGATTGCCATCTTCAATCCAGTTGCATGATTtcagatatatacatatgcactgTGTATGTTTTGAGAGAGATTTCTTTCTTATTTGTAAAGCTTATACAGTCTTTTCCAGGAGGAGCTTTTACccaatatatttacattctgTAACCTTTCCATTGACACTCCGACAGCTACAATACCcaagatttaaaatgataaaacagaAGGTTGGAGTagaatcataaaatattaactgaTATTTGCAGCTTTATATGCTTTtgaggttttgtttctttgatctCATTTGAAGAAGCCTTCAGGCACACTTTCAATCAGATAATGAGGATTAGGTGTTTTTGGGTGTGCCAGAAAAACACAAGGTAACATTTCATTTACAGCATAGTGgcaataaagaaatacaacacTCAAGATTAGtgtaacacattaaataaatgaaaaatgtacttaCTACCAAGCTCATTCTCCCACAACCTGTTCATTTTCACTCAGATCACACATGATGAGTCTGGTGCACTGACAGCTCACTGCATcagtatttcttattttcactGTTCCCAAATCCACTTTTGATCTGCCCACACTTAGGAGAGCGTTTCAGTACACAGTTGTGAACTACCTCGACGCTGTGCTTGGAAGTCAAAGTTGATTTTGACTGGTCAAGCAGACCTGGTCAGCTATAGCGAGTGGGTTATGGAGTCTGGCTTTCAAAACTGGATGAAAGCGGAAACTATAGATGCCTCTATGATGTGGTTCACAGTACAACCGAGAAAGCCCAGCAAATCAATCACGCTACATTCATAAATTACTCAACGCTGCTCACACATCCATGATACTATCTAGACGTGATCACTGCTCTTTTGATATAAAGAATTAtcctacagaaaaaaaaataacaatgcataaGCAGGACATAGGATtctttatatacactcacctaaaggattattaggaacacctgttcaatttctc

Function

symbol description
lztr1 Predicted to be active in Golgi apparatus. Human ortholog(s) of this gene implicated in Noonan syndrome 10; Noonan syndrome 2; and neurilemmomatosis. Orthologous to human LZTR1 (leucine zipper like transcription regulator 1).

NR:

description
PREDICTED: leucine-zipper-like transcriptional regulator 1

GO: NA

KEGG:

id description
K23330 LZTR1; leucine-zipper-like transcriptional regulator 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018692 True 5498 mRNA 0.44 20 18646519 18659398

Neighbor

gene id symbol gene type direction distance location
AMCG00018691 LOC103397299,LOC106580116,LOC107704964 coding upstream 40657 18590966 ~ 18605862 (+)
AMCG00018693 NA coding upstream 75180 18562533 ~ 18571339 (+)
AMCG00018697 NA coding upstream 118398 18527743 ~ 18528121 (+)
AMCG00018698 NA coding upstream 208735 18345957 ~ 18437784 (+)
AMCG00018686 NA coding upstream 506978 18138045 ~ 18139541 (+)
AMCG00018701 NA coding downstream 25741 18685139 ~ 18690239 (+)
AMCG00018708 NA coding downstream 69638 18729036 ~ 18729506 (+)
AMCG00018700 srsf9,LOC106568192,LOC107653776 coding downstream 73709 18733107 ~ 18734584 (+)
AMCG00018711 LOC106580268,LOC105014447,LOC106585675,LOC103353553 coding downstream 149978 18809376 ~ 18821287 (+)
AMCG00018710 git2 coding downstream 187178 18846576 ~ 18869867 (+)
G118005 LOC101154678 non-coding upstream 428420 18217803 ~ 18218099 (+)
G117959 NA non-coding upstream 665580 17979011 ~ 17980939 (+)
G117887 NA non-coding upstream 1061407 17584751 ~ 17585112 (+)
G117813 NA non-coding upstream 1393496 17250869 ~ 17253023 (+)
G117808 znrf3,LOC106584905 non-coding upstream 1421910 17224012 ~ 17224609 (+)
G118043 LOC104945943 non-coding downstream 14876 18674274 ~ 18676226 (+)
G118285 NA non-coding downstream 796744 19456142 ~ 19456983 (+)
G118290 wscd2,LOC107597274,LOC107743343,LOC107696066 non-coding downstream 808425 19467823 ~ 19473460 (+)
G118291 NA non-coding downstream 820293 19479691 ~ 19479956 (+)
G118304 NA non-coding downstream 917566 19576964 ~ 19579031 (+)
AMCG00018681 NA other upstream 663502 17981140 ~ 17983017 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other upstream 1576849 17068212 ~ 17069670 (+)
AMCG00018602 LOC102789415 other upstream 3664814 14954564 ~ 14981705 (+)
G117383 NA other upstream 3858386 14786623 ~ 14788133 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other upstream 3869409 14774115 ~ 14777110 (+)
AMCG00018702 NA other downstream 59808 18719206 ~ 18721343 (+)
AMCG00018712 NA other downstream 168199 18827597 ~ 18840095 (+)
AMCG00018717 trpv4,LOC106585668 other downstream 234937 18894335 ~ 18908956 (+)
AMCG00018732 NA other downstream 563770 19223168 ~ 19234351 (+)
AMCG00018740 NA other downstream 714074 19373472 ~ 19482092 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location