AMCG00018693


Basic Information

Item Value
gene id AMCG00018693
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 18562533 ~ 18571339 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018693
ATTGGCTGATTTTGTAAAACGTTTCTGTGGCGTTGTTGTGTGCGGTGCCAGTGATTGAGGGAAAACGTGTTGAGGTTTTTGCCGACTGCATTAAAATCTAGTACACGTATCCAGGGGGCTGTACCATGTCTAAAGAGCCGGGTTCGAGTGAGTCGCAGTCGCAGTCTCAATCTCAATCTCAGTCTCAGTCTCAGAGTGGCTCCAGTTCTTCCTCTGCTCCTCAGTCCTCCAGCCAGTCGTCCTCCTCTTCGGGCTCCGGGACACTCAGCTCTGTGGACACCATTCCAGTTCGGGAACTTGCCTCCATCCCTGAAGAGTCAGAAGAGCCTCAACCACAGCCCTGGGGCCGCCTGCTACCCATGGAGAAAGGCTTTAAGATCCACAattgtattAATGACGAATACTGGTTCGGGAGGGATAGCAAATGTGACTACAGTTTTAATGACCCTGTAATTAAACAGtcaaaaaattacataatttatagTAAGAAACACTTCAAGATATACAGGgAACAAGGAGTCCCATACATTGAAGATAACAGTGGAAATGGGACTTTTCTTGATGGACAGCtgtttgtgtttattgacCTCACAGTAGATGAACAATCCAACCTCCCAAAAGAATTTAAGGATAAATACTTGATATTGAAAAAAATTGGATCGGGAGTTTGTGGAGAGGTTAAGCTGGCGTTTGAAAGATCAACGTGTAAGAAGGTGGctgtgaaaacaataaataaaaaggatttcCCATCCATTGGTacAGCATCTAGATCAGCTGAAAGAGAAGTGGAGATTTTGAAAAAAGTAGATCATcCATGTTTAATAAAGACTGAAGATTTCTTCCAAACTGAAGATacctattatattatattggaACTGATGGAAGGAGGTGAGCTGTTTGAGAGAATCCGTAGCAAATCAAAATTGGAGGAATCGATTGCCAAACTGTATTTCTATCAGATGCTGCTTGCGGTTGAGTACCTCCATAACAACGGCATAATCCACAGGGATCTTAAGCCAGAGAACGTACTTCTCGCCTCAAGTGATGACATCTGCCTCATTAAGATCACGGATTTTAATCAGTCGAAGATTTTAGAGGAAGCGTCCTTGATGAAAACGCTGTGTGGGACGCCTACCTACCTCGCCCCCGAGGTTTTTACAGATGCGGTGACCGTCGGCTACAGTCGGGCGGTGGACTGTTGGAGTCTGGGagtgctgttTTTAAGTGGCTATCCTCCATTCCACACTCAGGGAACTGACTTAACCATCCGGGAGCAAATCACTCAGGGCTACTACAGATTCATTCCCTCCATTTGGAAGAATATTTCGGAAGATGGAAAGGATCTTGTGAAAAAATTGCTTGTTGTAAACCCTAAGGAAAGACTCACAGTTGAGGATGCACTGCAGCATCCTTGGCTTCAGGATGAAGGCATGAGAGCCACAGCAAAAGGACTTATGTATCAACAGAGTGACTCTGAGGAAAAGCCAACAACGAGCAGGAAGCGGCCATCTCAAGACACTGAAGACAAAAGGCCaagcaaaagaaaagcagatgaAACCTcctctgttaaaaaaacagcTCCTTAAATTTTTACatcttattttacagttttaagaATAGCCATTTTTTAAGGGATCCCCAAACACTGCACTCCAcaattgaaacatgttttaagcTGTGGTCACCCCATCTGGTTGCTGTAAAACCATAACCTTGTCTCCAAGTACaaaacttgaataaaataaaagcaatatgtCTTCAGAGATCTGTTACTGGCTTGAGCCTACATCGTGAAGACTTGACTCTTACTGCACTCCCCCAAAAAACTGTGATTGACATTCAGGGTCCAATGTTTTTGTGATAGctgtacatgtttgtgttttttactttCATTAACCGTTAAGATGCCTACTAATACGGTTAGCTACTGAAAACACATCAAACACGTTGTCTGTGGTCAGACAATCtctaattgtgttttgtacCAAAGTTCTAAACATCTGCAGATCCATTTTCAAGAAGGTAAATGTAAAGGAACCATGATGCATGATTGTttcaaaagtttttttgttttgttttgtttgtgactAAAATACAATCaggttaaaattatttttatactttgttttttctagtctttaacattttgtatgttttatttccttgtgtATGTAGGCCAGATTTCCCCTGTAGccagatgtatatatttaatatagaaTGGGCAGGATGACCACTCTGGAATAGAAGCACCTATAATTGTGTAGGGGTAACAAAGTGCACTAGTGTCATTTGACAACAGATATAGGATTAAATGCATAGTTTAAACAAGAGGTAGTGGTACATCTATGAAAAGTGGATGATTCCACAGTCTTCTTTTCAACTGAAGTTCCATTAAATGTACTTTCATGTAATCATGGTTTCATTACTTGTATGACAGCTGTGCAATTTCCAGAACTTCCTTTTTGTTTGATAGGAAAGATATCCGACACTAGTCAAGCTCTGTATGatccattaataaattattagttttgtaagaacatgaataaaatattttattaaaacgaCAAACATTTTCGTGGccattttttgctttattt

Function

GO:

id name namespace
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K06641 CHEK2; serine/threonine-protein kinase CHEK2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018693 True 2597 mRNA 0.40 15 18562533 18571339

Neighbor

gene id symbol gene type direction distance location
AMCG00018697 NA coding upstream 34412 18527743 ~ 18528121 (+)
AMCG00018698 NA coding upstream 124749 18345957 ~ 18437784 (+)
AMCG00018686 NA coding upstream 422992 18138045 ~ 18139541 (+)
AMCG00018685 prodha,LOC100695866,LOC108439536,LOC107373658,LOC106514456 coding upstream 526905 18023027 ~ 18035628 (+)
AMCG00018678 LOC104923679,LOC100329495,LOC107386260,LOC102231850,LOC107599169 coding upstream 603008 17933745 ~ 17959525 (+)
AMCG00018691 LOC103397299,LOC106580116,LOC107704964 coding downstream 19627 18590966 ~ 18605862 (+)
AMCG00018692 lztr1,LOC107755835,LOC107704547,LOC107668721 coding downstream 75180 18646519 ~ 18659398 (+)
AMCG00018701 NA coding downstream 113800 18685139 ~ 18690239 (+)
AMCG00018708 NA coding downstream 157697 18729036 ~ 18729506 (+)
AMCG00018700 srsf9,LOC106568192,LOC107653776 coding downstream 161768 18733107 ~ 18734584 (+)
G118005 LOC101154678 non-coding upstream 344434 18217803 ~ 18218099 (+)
G117959 NA non-coding upstream 581594 17979011 ~ 17980939 (+)
G117887 NA non-coding upstream 977421 17584751 ~ 17585112 (+)
G117813 NA non-coding upstream 1309510 17250869 ~ 17253023 (+)
G117808 znrf3,LOC106584905 non-coding upstream 1337924 17224012 ~ 17224609 (+)
G118043 LOC104945943 non-coding downstream 102935 18674274 ~ 18676226 (+)
G118285 NA non-coding downstream 884803 19456142 ~ 19456983 (+)
G118290 wscd2,LOC107597274,LOC107743343,LOC107696066 non-coding downstream 896484 19467823 ~ 19473460 (+)
G118291 NA non-coding downstream 908352 19479691 ~ 19479956 (+)
G118304 NA non-coding downstream 1005625 19576964 ~ 19579031 (+)
AMCG00018681 NA other upstream 579516 17981140 ~ 17983017 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other upstream 1492863 17068212 ~ 17069670 (+)
AMCG00018602 LOC102789415 other upstream 3580828 14954564 ~ 14981705 (+)
G117383 NA other upstream 3774400 14786623 ~ 14788133 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other upstream 3785423 14774115 ~ 14777110 (+)
AMCG00018702 NA other downstream 147867 18719206 ~ 18721343 (+)
AMCG00018712 NA other downstream 256258 18827597 ~ 18840095 (+)
AMCG00018717 trpv4,LOC106585668 other downstream 322996 18894335 ~ 18908956 (+)
AMCG00018732 NA other downstream 651829 19223168 ~ 19234351 (+)
AMCG00018740 NA other downstream 802133 19373472 ~ 19482092 (+)

Expression


Co-expression Network