AMCG00018700 (srsf9,LOC106568192,LOC107653776)


Basic Information

Item Value
gene id AMCG00018700
gene name srsf9,LOC106568192,LOC107653776
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 18733107 ~ 18734584 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018700
ATGGCGGATGGGAGGATCTATGTGGGGAACCTTCCAACGGATGTGCAGGAACGAGACATTGAGGATCTCTTCTTCAAATATGGCAAGATACGAGATATTGAGCTGAAGAACAACAGGGGCACCATCCCCTTCGCCTTCGTCCGTTTTGAAGACCCACGGGATGCGGAGGATGCTGTCTACGGGCGGAATGGCTATGGCTTTGGAGACTGCAAGCTGCGTGTTGAGTACCCacgctcctcctcctccaaattTAGTGGCCCCATGGGAGGTGGGCCCCGGGGGAGGTTTGGGCCACCTACTCGGAGATCAGAGTTCAGAGTCATCGTGACTGGGCTGCCACCCACAGGTAGCTGGCAGGACCTGAAGGATCACATGCGGGAGGCTGGGGACGTGTGTTTTGCGGATGTGCAGCGGGATGGGGAGGGTGTGGTGGAGTTCCTGCGGAGAGAGGATATGGAATATGCCCTGCGCCGACTGGACCGGACCGAGTTCCGATCACACCAGGGTGAGACGGCGTACATCCGAGTCCATGAAGAGCGGGGTTCGAGCTGGGGGCGCTCGCGGTCTCGCTCCCGGTCCCGGGGGAGGTACTCCCCATATCAAAGCCGGGGCTCCCCGCCCCCGCGGTACCAGTCACCCCCACCACGCCGACACTCATTGTCACGCCATAGCCCACCCCCCCGGCGTATCCCTGCACAGCACCacagccccccaccccgccACTACCGGTAA

Function

symbol description
srsf9 Predicted to enable RNA binding activity. Predicted to be involved in alternative mRNA splicing, via spliceosome. Predicted to be active in nuclear speck. Orthologous to human SRSF9 (serine and arginine rich splicing factor 9).

NR:

description
PREDICTED: serine/arginine-rich splicing factor 9

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K21123 SRSF9, SFRS9; serine/arginine-rich splicing factor 9

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018700 True 732 mRNA 0.61 4 18733107 18734584

Neighbor

gene id symbol gene type direction distance location
AMCG00018708 NA coding upstream 3601 18729036 ~ 18729506 (+)
AMCG00018701 NA coding upstream 42868 18685139 ~ 18690239 (+)
AMCG00018692 lztr1,LOC107755835,LOC107704547,LOC107668721 coding upstream 73709 18646519 ~ 18659398 (+)
AMCG00018691 LOC103397299,LOC106580116,LOC107704964 coding upstream 127245 18590966 ~ 18605862 (+)
AMCG00018693 NA coding upstream 161768 18562533 ~ 18571339 (+)
AMCG00018711 LOC106580268,LOC105014447,LOC106585675,LOC103353553 coding downstream 74792 18809376 ~ 18821287 (+)
AMCG00018710 git2 coding downstream 111992 18846576 ~ 18869867 (+)
AMCG00018716 gltp,gltpa,LOC107752155,LOC107654619,LOC107741237,LOC107597288,LOC107595968 coding downstream 142186 18876770 ~ 18885979 (+)
AMCG00018720 mmab coding downstream 313204 19047788 ~ 19050639 (+)
AMCG00018719 kctd10,LOC105014907 coding downstream 338520 19073104 ~ 19078777 (+)
G118013 NA non-coding upstream 2295 18466368 ~ 18730812 (+)
G118043 LOC104945943 non-coding upstream 56881 18674274 ~ 18676226 (+)
G118005 LOC101154678 non-coding upstream 515008 18217803 ~ 18218099 (+)
G117959 NA non-coding upstream 752168 17979011 ~ 17980939 (+)
G117887 NA non-coding upstream 1147995 17584751 ~ 17585112 (+)
G118285 NA non-coding downstream 721558 19456142 ~ 19456983 (+)
G118290 wscd2,LOC107597274,LOC107743343,LOC107696066 non-coding downstream 733239 19467823 ~ 19473460 (+)
G118291 NA non-coding downstream 745107 19479691 ~ 19479956 (+)
G118304 NA non-coding downstream 842380 19576964 ~ 19579031 (+)
G118410 NA non-coding downstream 1259542 19994126 ~ 19994329 (+)
AMCG00018702 NA other upstream 11764 18719206 ~ 18721343 (+)
AMCG00018681 NA other upstream 750090 17981140 ~ 17983017 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other upstream 1663437 17068212 ~ 17069670 (+)
AMCG00018602 LOC102789415 other upstream 3751402 14954564 ~ 14981705 (+)
G117383 NA other upstream 3944974 14786623 ~ 14788133 (+)
AMCG00018712 NA other downstream 93013 18827597 ~ 18840095 (+)
AMCG00018717 trpv4,LOC106585668 other downstream 159751 18894335 ~ 18908956 (+)
AMCG00018732 NA other downstream 488584 19223168 ~ 19234351 (+)
AMCG00018740 NA other downstream 638888 19373472 ~ 19482092 (+)
AMCG00018762 NA other downstream 1236555 19971139 ~ 19974730 (+)

Expression


Co-expression Network