AMCG00018701


Basic Information

Item Value
gene id AMCG00018701
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 18685139 ~ 18690239 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018701
ATGGGACTCAAGAAATTCATAAAGGATTATTTTGTTGGATTCTGGGATTATGAGACCACAAAGGTAATCGTTGTGAAAAACAGGACTCTGGGAGTCATCTACAGACTTGTACAGTTCTTGGTCATCATGTACTTCATTTGGTATGTCTTCATCAGTCAAAAGGCCtaccaggagagagagacgcgCCCACAGAGCTCCATCTACACCAAGATGAAGGGCATGGCACTGCTGGGGGGCACAGTGCAGGACATGGTGGAGTATGTCAGGCCTTCAGAGGGCGGTGATGTCATCAGCACTATCCTGCGAAAAGAGATCACGTACGACCAGCAGCAGGGGGTGTGCGCAGAGCATTATAAGGTCCCAAATGCCAACTGTACAACTGACTCGGACTGCATAGAGGGCATGGTTGAATTTAATGGCAACGGACAGAGGACAGGCCGCTGTGTGCCATACTACAACCACACCTTCAAGACCTGCGAAATCAAGAGCTGGTGCCCCATCGAGGAGTTCGCCGTTGTCAAGGAGCCGTGCCTGGCAGAGGCTGTAAATTTCACCGTCTACATTAAGAACACCATCCACTTCGCAAATCTCAATGTGCTCAGAGGTAAcattgagcaaaacaaaaccaactaCCTGGACAACTGCACTTATGACGAGGTCACAGACATGTACTGTCCCATCTTTAAGCTGGGCTACATCGCTAGGAAAGCCAAGGAGAAGTTCAGCGAGCTGTGTGAGACGGGAGGGGTGATTGGCATCTACATTAACTGGAAGTGTGATCTGGACTTGGATCCCTCCGAGTGCAACCCAGAGTACTCCTTCCGCCGGCTGGACATGCGCAAGAACCTACACAGTTCTGGGTACCACTATAGGTTTGCCAAGTTCTACAGCAAGAATGGCAGCGAGTTCAGGACTCTCATCAAGGCCTATGGGATTCGACTGGATGTCATTGTTCATGGGGAGGCGGGGAAATTCAGAATCATCCCAACAGTGATCAACATGGTGACAGCCTTGACATCTGTGGGAATTTGCTCCTTCGTCTGTGACTGGATCCTGCTGACATTTATTGACAAAAACGAAGTCTACAGCGACCATAAGTTTGATGAGGTTTGGAAAGACTCCATTCAGAATACAGTGACAGAGGTGACGGAGGTGACGGAGGTGACGTCTGTGAGCCGGGACTCCACTCACTCTGACTTGTCCGAAGGCGTGGCCCTCTGA

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0035590 purinergic nucleotide receptor signaling pathway biological_process
GO:0006812 cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004931 extracellularly ATP-gated cation channel activity molecular_function
GO:0001614 purinergic nucleotide receptor activity molecular_function

KEGG:

id description
K05216 P2RX2; P2X purinoceptor 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018701 True 1221 mRNA 0.50 12 18685139 18690239

Neighbor

gene id symbol gene type direction distance location
AMCG00018692 lztr1,LOC107755835,LOC107704547,LOC107668721 coding upstream 25741 18646519 ~ 18659398 (+)
AMCG00018691 LOC103397299,LOC106580116,LOC107704964 coding upstream 79277 18590966 ~ 18605862 (+)
AMCG00018693 NA coding upstream 113800 18562533 ~ 18571339 (+)
AMCG00018697 NA coding upstream 157018 18527743 ~ 18528121 (+)
AMCG00018698 NA coding upstream 247355 18345957 ~ 18437784 (+)
AMCG00018708 NA coding downstream 38797 18729036 ~ 18729506 (+)
AMCG00018700 srsf9,LOC106568192,LOC107653776 coding downstream 42868 18733107 ~ 18734584 (+)
AMCG00018711 LOC106580268,LOC105014447,LOC106585675,LOC103353553 coding downstream 119137 18809376 ~ 18821287 (+)
AMCG00018710 git2 coding downstream 156337 18846576 ~ 18869867 (+)
AMCG00018716 gltp,gltpa,LOC107752155,LOC107654619,LOC107741237,LOC107597288,LOC107595968 coding downstream 186531 18876770 ~ 18885979 (+)
G118043 LOC104945943 non-coding upstream 8913 18674274 ~ 18676226 (+)
G118005 LOC101154678 non-coding upstream 467040 18217803 ~ 18218099 (+)
G117959 NA non-coding upstream 704200 17979011 ~ 17980939 (+)
G117887 NA non-coding upstream 1100027 17584751 ~ 17585112 (+)
G117813 NA non-coding upstream 1432116 17250869 ~ 17253023 (+)
G118285 NA non-coding downstream 765903 19456142 ~ 19456983 (+)
G118290 wscd2,LOC107597274,LOC107743343,LOC107696066 non-coding downstream 777584 19467823 ~ 19473460 (+)
G118291 NA non-coding downstream 789452 19479691 ~ 19479956 (+)
G118304 NA non-coding downstream 886725 19576964 ~ 19579031 (+)
G118410 NA non-coding downstream 1303887 19994126 ~ 19994329 (+)
AMCG00018681 NA other upstream 702122 17981140 ~ 17983017 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other upstream 1615469 17068212 ~ 17069670 (+)
AMCG00018602 LOC102789415 other upstream 3703434 14954564 ~ 14981705 (+)
G117383 NA other upstream 3897006 14786623 ~ 14788133 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other upstream 3908029 14774115 ~ 14777110 (+)
AMCG00018702 NA other downstream 28967 18719206 ~ 18721343 (+)
AMCG00018712 NA other downstream 137358 18827597 ~ 18840095 (+)
AMCG00018717 trpv4,LOC106585668 other downstream 204096 18894335 ~ 18908956 (+)
AMCG00018732 NA other downstream 532929 19223168 ~ 19234351 (+)
AMCG00018740 NA other downstream 683233 19373472 ~ 19482092 (+)

Expression


Co-expression Network